RchiOBHm_Chr7g0221541
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000851
Physical Location & Seq
Reverse (-)
42559072 .. 42559910
839 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19825

Sequence Viewer

Length: 639 bp
ATGGACTTAGACGTCGACATTTCGTGGTGGGTCCAGGAGTTTCTCCTCCGTGACCGCCACAACGAGACCATCGCCAAGCGACTCCTTGCCGTCGCGCCGCTCCAGAACCGCCACGACTGGCGGTTGAAGAAGACCGTCCTCCTCCGAACAATCGAGTCCGCAATCTACGACGACGCTTCAGTCACCGAAGCGATCCTCGAAGCCCTGGAGTCCATCGAGGCTTTGGACCGCGGCCAAGGGTTTCAGACCACGGAGGCCATGAGGGCGGCGTACTGCGCCGTCGCGACGGAGTGCACGGTCAAGTTCTTGGTTTGCTTCGGACGGAAGTACTTTGAGGCTGTGGATCGGATTTGGAGAGGTAGGGTTAGGGTTAGGGTTTTGGAGGAGAGTGAGGGGAGCGAGCTGGTTTTGGCGGAGTTGAAAGAGAGAAAATATGAGGTGGAGGCTGCGATTTGGGATAGGAATGTGTCGAAAAAGCTAGCGAGGATGAATACTAGAAATGATGCGCTGAGATTGGTTGGGAAGTATGCTTGGGCTGTGATTGGTCCTCCTTTTCTTAATTGGGCCGTTAGATTTCATATGGTTGAGGAAAGTTTAGGTGAGGGTGATGGTAATGTAGGTGATGGTGAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

212

Amino Acids

24.42

Weight (kDa)

5.33

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 11, 179
AatII GACGTC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 95, 231, 284
AciI CCGC 9 cut(s) 55, 98, 109, 121, 159, 229, 231, 266, 413
AclWI GGATC 2 cut(s) 187, 351
AcoI YGGCCR 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 272, 329
AgsI TTSAA 2 cut(s) 127, 421
AjnI CCWGG 2 cut(s) 33, 204
AluBI AGCT 2 cut(s) 403, 478
AluI AGCT 2 cut(s) 403, 478
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 292
AlwI GGATC 2 cut(s) 187, 351
AoxI GGCC 3 cut(s) 232, 255, 564
ApaLI GTGCAC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 446
AspLEI GCGC 3 cut(s) 97, 278, 508
AspS9I GGNCC 4 cut(s) 31, 226, 545, 564
AsuHPI GGTGA 5 cut(s) 175, 611, 617, 632, 638
AsuNHI GCTAGC 1 cut(s) 478
AvaII GGWCC 3 cut(s) 31, 226, 545
BaeGI GKGCMC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 433
BccI CCATC 4 cut(s) 77, 221, 602, 617
BceAI ACGGC 3 cut(s) 74, 263, 551
BciT130I CCWGG 2 cut(s) 35, 206
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 479, 495
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 4 cut(s) 98, 232, 267, 447
BlsI GCNGC 4 cut(s) 99, 233, 268, 448
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 35, 206
Bme18I GGWCC 3 cut(s) 31, 226, 545
BmgT120I GGNCC 4 cut(s) 31, 226, 545, 564
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 2 cut(s) 35, 206
BmsI GCATC 1 cut(s) 493
BmtI GCTAGC 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 86, 227
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 204, 229, 235, 249
Bse1I ACTGG 1 cut(s) 122
BseBI CCWGG 2 cut(s) 35, 206
BseDI CCNNGG 4 cut(s) 204, 229, 235, 249
BseGI GGATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 3 cut(s) 35, 131, 398
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 1 cut(s) 433
Bsh1236I CGCG 3 cut(s) 95, 231, 284
BshFI GGCC 3 cut(s) 234, 257, 566
BsiHKAI GWGCWC 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 3 cut(s) 234, 257, 566
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 192, 343
Bsp68I TCGCGA 1 cut(s) 284
BspACI CCGC 9 cut(s) 55, 98, 109, 121, 159, 229, 231, 266, 413
BspANI GGCC 3 cut(s) 234, 257, 566
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 3 cut(s) 95, 231, 284
BspLI GGNNCC 1 cut(s) 32
BspOI GCTAGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 187, 351
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 4 cut(s) 204, 229, 235, 249
BssMI GATC 2 cut(s) 192, 343
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 2 cut(s) 35, 206
Bst4CI ACNGT 2 cut(s) 136, 298
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 401, 480
BstDEI CTNAG 2 cut(s) 7, 509
BstDSI CCRYGG 2 cut(s) 229, 249
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 3 cut(s) 95, 231, 284
BstHHI GCGC 3 cut(s) 97, 278, 508
BstKTI GATC 2 cut(s) 195, 346
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 192, 343
BstMWI GCNNNNNNNGC 2 cut(s) 263, 275
BstNI CCWGG 2 cut(s) 35, 206
BstSCI CCNGG 2 cut(s) 33, 204
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 3 cut(s) 95, 231, 284
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 234, 257, 566
BtgI CCRYGG 2 cut(s) 229, 249
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 492
BtuMI TCGCGA 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 401, 480
CfoI GCGC 3 cut(s) 97, 278, 508
Cfr13I GGNCC 4 cut(s) 31, 226, 545, 564
Cfr42I CCGCGG 1 cut(s) 232
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 271, 328
CviAII CATG 1 cut(s) 259
CviQI GTAC 2 cut(s) 271, 328
DdeI CTNAG 2 cut(s) 7, 509
DpnI GATC 2 cut(s) 194, 345
DpnII GATC 2 cut(s) 192, 343
DrdI GACNNNNNNGTC 2 cut(s) 11, 179
DseDI GACNNNNNNGTC 2 cut(s) 11, 179
EaeI YGGCCR 1 cut(s) 232
EciI GGCGGA 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 3 cut(s) 31, 226, 545
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 33, 204
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 262
FaiI YATR 5 cut(s) 260, 435, 528, 579, 581
FatI CATG 1 cut(s) 258
FauNDI CATATG 1 cut(s) 579
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 98, 232, 267, 447
FokI GGATG 1 cut(s) 499
Fsp4HI GCNGC 4 cut(s) 98, 232, 267, 447
FspBI CTAG 2 cut(s) 479, 495
GlaI GCGC 3 cut(s) 96, 277, 507
GluI GCNGC 4 cut(s) 98, 232, 267, 447
GsuI CTGGAG 2 cut(s) 86, 227
HaeIII GGCC 3 cut(s) 234, 257, 566
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 97, 278, 508
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 3 cut(s) 95, 276, 506
HinP1I GCGC 3 cut(s) 95, 276, 506
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 3 cut(s) 81, 155, 209
HphI GGTGA 5 cut(s) 175, 611, 617, 632, 638
Hpy166II GTNNAC 2 cut(s) 16, 294
Hpy188I TCNGA 4 cut(s) 146, 246, 320, 348
Hpy188III TCNNGA 2 cut(s) 103, 283
Hpy8I GTNNAC 2 cut(s) 16, 294
Hpy99I CGWCG 6 cut(s) 17, 95, 173, 176, 284, 289
HpyCH4III ACNGT 2 cut(s) 136, 298
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 275
HpyF3I CTNAG 2 cut(s) 7, 509
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 3 cut(s) 95, 276, 506
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 192, 343
LmnI GCTCC 2 cut(s) 105, 396
LpnPI CCDG 7 cut(s) 20, 47, 103, 116, 191, 218, 389
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 479, 495
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 50, 181
MalI GATC 2 cut(s) 194, 345
MbiI CCGCTC 1 cut(s) 100
MboI GATC 2 cut(s) 192, 343
MboII GAAGA 2 cut(s) 139, 142
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 1 cut(s) 559
MlyI GAGTC 3 cut(s) 75, 164, 218
MseI TTAA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 35, 206
MvaI CCWGG 2 cut(s) 35, 206
MvnI CGCG 3 cut(s) 95, 231, 284
MwoI GCNNNNNNNGC 2 cut(s) 263, 275
NdeI CATATG 1 cut(s) 579
NdeII GATC 2 cut(s) 192, 343
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 50, 181
NruI TCGCGA 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 4 cut(s) 99, 233, 268, 448
PleI GAGTC 3 cut(s) 75, 163, 217
PpsI GAGTC 3 cut(s) 75, 163, 217
Psp6I CCWGG 2 cut(s) 33, 204
PspGI CCWGG 2 cut(s) 33, 204
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 4 cut(s) 31, 226, 545, 564
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 2 cut(s) 272, 329
RsaNI GTAC 2 cut(s) 271, 328
SacII CCGCGG 1 cut(s) 232
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 4 cut(s) 98, 232, 267, 447
Sau3AI GATC 2 cut(s) 192, 343
Sau96I GGNCC 4 cut(s) 31, 226, 545, 564
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 3 cut(s) 75, 164, 218
ScrFI CCNGG 2 cut(s) 35, 206
SduI GDGCHC 1 cut(s) 296
SetI ASST 7 cut(s) 15, 361, 405, 441, 480, 601, 622
SfaNI GCATC 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 3 cut(s) 31, 226, 545
Sse9I AATT 1 cut(s) 559
SsiI CCGC 9 cut(s) 55, 98, 109, 121, 159, 229, 231, 266, 413
SspMI CTAG 2 cut(s) 479, 495
StyD4I CCNGG 2 cut(s) 33, 204
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 136, 298
TaiI ACGT 1 cut(s) 15
TaqI TCGA 5 cut(s) 15, 153, 198, 216, 470
TasI AATT 1 cut(s) 559
TatI WGTACW 1 cut(s) 327
TauI GCSGC 3 cut(s) 100, 234, 269
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 2 cut(s) 50, 181
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 50, 181
TspDTI ATGAA 2 cut(s) 503, 566
TspGWI ACGGA 4 cut(s) 38, 266, 302, 337
VneI GTGCAC 1 cut(s) 292
VpaK11BI GGWCC 3 cut(s) 31, 226, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 479, 495
ZraI GACGTC 1 cut(s) 13
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.