MD10G1106900.v1.1
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000851
Physical Location & Seq
Reverse (-)
17530299 .. 17531548
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1106900.v1.1.491

Sequence Viewer

Length: 570 bp
ATGGGTGCTCCTAAGCAGAAATGGACGGCAGAAGAAGAATCAGCCCTTAAAGCTGGAGTTATTAAACATGGCGCAGGAAAATGGCGGACCATACTTAAAGATCCAGAATTTAGTGGCGTTCTGTATACTCGCTCAAATGTAGATCTTAAGGATAAGTGGAGAAATATGAGTGTCATGGCAAATGGATGGGGCTCTCGAGAGAAAGCCAAGACAGCACTTAGAAGAAAGCATCTGATTTCTAAACATGATGAAAACTCTATTCCTCTCAGTACTACTGTTCAAAGCGATGATGAAATGATGGATGCTAAGCCTATTTCAGTTTCTAGTGAGACCCAGCAGATTTCTGGTCCAAGAAAATCTATTGTGAGGTTAGACAGATTTCTTGGCTTTTTCGAATTCTTGTTTTTTAAAAGTCATTGCCAAATCTCGTATTTAAATACTGCCCATCTGATATATTCTATTCAGTTTTTGAGGACCAATAACTCTTGTGCAATTCAGCAGGTTGATTTGTTTGTTAATGTTATTCACGACATCTCGAAGGGTTCAGATTGGTTAGTTGTGCAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

190

Amino Acids

21.57

Weight (kDa)

9.34

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 56 4.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 125
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 2 cut(s) 107, 395
AfaI GTAC 1 cut(s) 271
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 281
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 195
ApoI RAATTY 2 cut(s) 107, 395
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 87, 347, 474
AsuII TTCGAA 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 3 cut(s) 87, 347, 474
BanII GRGCYC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 3 cut(s) 180, 292, 453
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 490
BglII AGATCT 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 306
BmcAI AGTACT 1 cut(s) 271
Bme18I GGWCC 3 cut(s) 87, 347, 474
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 3 cut(s) 87, 347, 474
BmsI GCATC 2 cut(s) 238, 292
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 415
BseGI GGATG 2 cut(s) 191, 307
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 10, 194
Bsp143I GATC 2 cut(s) 100, 142
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 1 cut(s) 95
BspT104I TTCGAA 1 cut(s) 393
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 415
BssMI GATC 2 cut(s) 100, 142
BssNAI GTATAC 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 277
BstAFI CTTAAG 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 12, 218, 266, 306
BstF5I GGATG 2 cut(s) 191, 307
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 103, 145
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 100, 142
BstMWI GCNNNNNNNGC 2 cut(s) 50, 212
BstX2I RGATCY 2 cut(s) 100, 142
BstYI RGATCY 2 cut(s) 100, 142
BstZ17I GTATAC 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 191, 307
BveI ACCTGC 1 cut(s) 490
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 87, 347, 474
Csp6I GTAC 1 cut(s) 270
CviAII CATG 3 cut(s) 68, 175, 245
CviJI RGCY 6 cut(s) 44, 53, 192, 206, 310, 387
CviKI_1 RGCY 6 cut(s) 44, 53, 192, 206, 310, 387
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 4 cut(s) 12, 218, 266, 306
DpnI GATC 2 cut(s) 102, 144
DpnII GATC 2 cut(s) 100, 142
DraI TTTAAA 2 cut(s) 409, 435
EciI GGCGGA 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 3 cut(s) 87, 347, 474
Eco88I CYCGRG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 194
FaeI CATG 3 cut(s) 71, 178, 248
FaiI YATR 7 cut(s) 69, 92, 126, 167, 176, 246, 454
FatI CATG 3 cut(s) 67, 174, 244
FblI GTMKAC 1 cut(s) 125
FokI GGATG 2 cut(s) 198, 314
FriOI GRGCYC 1 cut(s) 194
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 73
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 75
HhaI GCGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 71, 178, 248
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 234, 450, 547
Hpy188III TCNNGA 5 cut(s) 104, 195, 197, 527, 535
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 491, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 212
HpyF3I CTNAG 4 cut(s) 12, 218, 266, 306
Hsp92II CATG 3 cut(s) 71, 178, 248
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 100, 142
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 6 cut(s) 39, 60, 117, 330, 347, 485
LweI GCATC 2 cut(s) 238, 292
MaeI CTAG 1 cut(s) 324
MalI GATC 2 cut(s) 102, 144
MboI GATC 2 cut(s) 100, 142
MboII GAAGA 3 cut(s) 44, 47, 234
MflI RGATCY 2 cut(s) 100, 142
MhlI GDGCHC 2 cut(s) 10, 194
MluCI AATT 3 cut(s) 107, 395, 492
MnlI CCTC 3 cut(s) 273, 360, 465
MseI TTAA 7 cut(s) 48, 63, 96, 147, 408, 434, 516
MspCI CTTAAG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 50, 212
NdeII GATC 2 cut(s) 100, 142
NlaIII CATG 3 cut(s) 71, 178, 248
NspV TTCGAA 1 cut(s) 393
PaeR7I CTCGAG 1 cut(s) 195
PfeI GAWTC 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 333
PspPI GGNCC 3 cut(s) 87, 347, 474
PsuI RGATCY 2 cut(s) 100, 142
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 7 cut(s) 48, 63, 96, 147, 408, 434, 516
Sau3AI GATC 2 cut(s) 100, 142
Sau96I GGNCC 3 cut(s) 87, 347, 474
ScaI AGTACT 1 cut(s) 271
SduI GDGCHC 2 cut(s) 10, 194
SetI ASST 3 cut(s) 55, 371, 504
SfaNI GCATC 2 cut(s) 238, 292
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 393
SinI GGWCC 3 cut(s) 87, 347, 474
SlaI CTCGAG 1 cut(s) 195
SmiI ATTTAAAT 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 146, 195
SmoI CTYRAG 2 cut(s) 146, 195
Sse9I AATT 3 cut(s) 107, 395, 492
SsiI CCGC 1 cut(s) 85
SspI AATATT 1 cut(s) 566
SspMI CTAG 1 cut(s) 324
SwaI ATTTAAAT 1 cut(s) 435
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 196, 393, 536
TasI AATT 3 cut(s) 107, 395, 492
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 7 cut(s) 48, 63, 96, 147, 408, 434, 516
Tru9I TTAA 7 cut(s) 48, 63, 96, 147, 408, 434, 516
TspDTI ATGAA 2 cut(s) 264, 306
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 3 cut(s) 87, 347, 474
XapI RAATTY 2 cut(s) 107, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 1 cut(s) 324
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.