SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 11 |
| AatII | GACGTC | 1 cut(s) | 15 |
| Acc16I | TGCGCA | 1 cut(s) | 1400 |
| Acc36I | ACCTGC | 2 cut(s) | 664, 1192 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 163, 1154 |
| AccBSI | CCGCTC | 2 cut(s) | 100, 263 |
| AccI | GTMKAC | 1 cut(s) | 15 |
| AccII | CGCG | 4 cut(s) | 25, 57, 228, 1217 |
| AclWI | GGATC | 3 cut(s) | 544, 557, 1452 |
| AcoI | YGGCCR | 2 cut(s) | 229, 1804 |
| AcuI | CTGAAG | 3 cut(s) | 298, 1281, 1335 |
| AcvI | CACGTG | 1 cut(s) | 1793 |
| AcyI | GRCGYC | 2 cut(s) | 12, 90 |
| AfaI | GTAC | 4 cut(s) | 269, 338, 1273, 1717 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 61, 163, 247, 318, 1005, 1154 |
| AflIII | ACRYGT | 1 cut(s) | 1792 |
| AgsI | TTSAA | 4 cut(s) | 124, 905, 1072, 1118 |
| AjiI | CACGTC | 1 cut(s) | 736 |
| AjnI | CCWGG | 2 cut(s) | 552, 1651 |
| Alw21I | GWGCWC | 1 cut(s) | 1499 |
| Alw26I | GTCTC | 1 cut(s) | 422 |
| Alw44I | GTGCAC | 1 cut(s) | 1495 |
| AlwI | GGATC | 3 cut(s) | 544, 557, 1452 |
| Ama87I | CYCGRG | 1 cut(s) | 35 |
| AoxI | GGCC | 3 cut(s) | 229, 881, 1804 |
| ApaLI | GTGCAC | 1 cut(s) | 1495 |
| ApeKI | GCWGC | 4 cut(s) | 308, 449, 1367, 1472 |
| AspLEI | GCGC | 6 cut(s) | 275, 511, 826, 1015, 1217, 1401 |
| AspS9I | GGNCC | 5 cut(s) | 31, 223, 557, 881, 1238 |
| AsuHPI | GGTGA | 6 cut(s) | 172, 668, 796, 934, 1043, 1652 |
| AsuNHI | GCTAGC | 1 cut(s) | 481 |
| AvaI | CYCGRG | 1 cut(s) | 35 |
| AvaII | GGWCC | 4 cut(s) | 31, 223, 557, 1238 |
| BaeGI | GKGCMC | 2 cut(s) | 1499, 1622 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1011, 1044 |
| BalI | TGGCCA | 1 cut(s) | 1806 |
| BamHI | GGATCC | 1 cut(s) | 549 |
| BanII | GRGCYC | 1 cut(s) | 240 |
| BbrPI | CACGTG | 1 cut(s) | 1793 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| Bbv12I | GWGCWC | 1 cut(s) | 1499 |
| BbvCI | CCTCAGC | 1 cut(s) | 1172 |
| BbvI | GCAGC | 4 cut(s) | 295, 436, 1354, 1484 |
| BceAI | ACGGC | 2 cut(s) | 260, 699 |
| BciT130I | CCWGG | 2 cut(s) | 554, 1653 |
| BclI | TGATCA | 2 cut(s) | 622, 1507 |
| BcoDI | GTCTC | 1 cut(s) | 422 |
| BfaI | CTAG | 6 cut(s) | 482, 498, 948, 1077, 1308, 1569 |
| BfmI | CTRYAG | 2 cut(s) | 1059, 1368 |
| BfuAI | ACCTGC | 2 cut(s) | 664, 1192 |
| BglII | AGATCT | 1 cut(s) | 1418 |
| BlpI | GCTNAGC | 1 cut(s) | 75 |
| BmcAI | AGTACT | 1 cut(s) | 1717 |
| Bme1390I | CCNGG | 2 cut(s) | 554, 1653 |
| Bme18I | GGWCC | 4 cut(s) | 31, 223, 557, 1238 |
| BmeT110I | CYCGRG | 1 cut(s) | 35 |
| BmgBI | CACGTC | 1 cut(s) | 736 |
| BmgT120I | GGNCC | 5 cut(s) | 31, 223, 557, 881, 1238 |
| BmiI | GGNNCC | 8 cut(s) | 32, 239, 551, 558, 678, 772, 963, 1769 |
| BmrFI | CCNGG | 2 cut(s) | 554, 1653 |
| BmsI | GCATC | 6 cut(s) | 496, 985, 1246, 1289, 1576, 1633 |
| BmtI | GCTAGC | 1 cut(s) | 485 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| Bpu10I | CCTNAGC | 2 cut(s) | 975, 1172 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 75 |
| BpuEI | CTTGAG | 1 cut(s) | 1325 |
| BsaAI | YACGTR | 1 cut(s) | 1793 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1647 |
| BsaHI | GRCGYC | 2 cut(s) | 12, 90 |
| BsaJI | CCNNGG | 7 cut(s) | 85, 201, 226, 232, 276, 553, 1208 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 825, 855 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 61, 163, 247, 318, 1005, 1154 |
| Bse1I | ACTGG | 4 cut(s) | 1241, 1347, 1542, 1757 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1647 |
| BseBI | CCWGG | 2 cut(s) | 554, 1653 |
| BseDI | CCNNGG | 7 cut(s) | 85, 201, 226, 232, 276, 553, 1208 |
| BseGI | GGATG | 2 cut(s) | 442, 709 |
| BseJI | GATNNNNATC | 1 cut(s) | 1647 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 61, 163, 247, 318, 1005, 1154 |
| BseMII | CTCAG | 6 cut(s) | 384, 408, 1186, 1314, 1413, 1491 |
| BseNI | ACTGG | 4 cut(s) | 1241, 1347, 1542, 1757 |
| BseRI | GAGGAG | 5 cut(s) | 125, 128, 182, 401, 846 |
| BseSI | GKGCMC | 2 cut(s) | 1499, 1622 |
| BseXI | GCAGC | 4 cut(s) | 295, 436, 1354, 1484 |
| BseYI | CCCAGC | 1 cut(s) | 1563 |
| BsgI | GTGCAG | 2 cut(s) | 692, 1491 |
| Bsh1236I | CGCG | 4 cut(s) | 25, 57, 228, 1217 |
| Bsh1285I | CGRYCG | 1 cut(s) | 355 |
| BshFI | GGCC | 3 cut(s) | 231, 883, 1806 |
| BsiEI | CGRYCG | 1 cut(s) | 355 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1499 |
| BsiHKCI | CYCGRG | 1 cut(s) | 35 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 61, 163, 247, 318, 1005, 1154 |
| BsmAI | GTCTC | 1 cut(s) | 422 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| BsnI | GGCC | 3 cut(s) | 231, 883, 1806 |
| BsoBI | CYCGRG | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 3 cut(s) | 240, 1499, 1622 |
| Bsp143I | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 75 |
| BspANI | GGCC | 3 cut(s) | 231, 883, 1806 |
| BspCNI | CTCAG | 6 cut(s) | 385, 409, 1185, 1313, 1414, 1492 |
| BspFNI | CGCG | 4 cut(s) | 25, 57, 228, 1217 |
| BspLI | GGNNCC | 8 cut(s) | 32, 239, 551, 558, 678, 772, 963, 1769 |
| BspMAI | CTGCAG | 1 cut(s) | 1372 |
| BspMI | ACCTGC | 2 cut(s) | 664, 1192 |
| BspOI | GCTAGC | 1 cut(s) | 485 |
| BspPI | GGATC | 3 cut(s) | 544, 557, 1452 |
| BspQI | GCTCTTC | 1 cut(s) | 1758 |
| BsrBI | CCGCTC | 2 cut(s) | 100, 263 |
| BsrI | ACTGG | 4 cut(s) | 1241, 1347, 1542, 1757 |
| BssECI | CCNNGG | 7 cut(s) | 85, 201, 226, 232, 276, 553, 1208 |
| BssMI | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| BssNI | GRCGYC | 2 cut(s) | 12, 90 |
| BssT1I | CCWWGG | 3 cut(s) | 201, 232, 1208 |
| Bst2UI | CCWGG | 2 cut(s) | 554, 1653 |
| Bst4CI | ACNGT | 4 cut(s) | 295, 841, 1060, 1767 |
| Bst6I | CTCTTC | 2 cut(s) | 50, 1758 |
| BstACI | GRCGYC | 2 cut(s) | 12, 90 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 521 |
| BstBAI | YACGTR | 1 cut(s) | 1793 |
| BstC8I | GCNNGC | 6 cut(s) | 404, 483, 487, 513, 1288, 1696 |
| BstDSI | CCRYGG | 2 cut(s) | 226, 276 |
| BstF5I | GGATG | 2 cut(s) | 442, 709 |
| BstFNI | CGCG | 4 cut(s) | 25, 57, 228, 1217 |
| BstHHI | GCGC | 6 cut(s) | 275, 511, 826, 1015, 1217, 1401 |
| BstKTI | GATC | 7 cut(s) | 246, 355, 552, 625, 1421, 1447, 1510 |
| BstMAI | GTCTC | 1 cut(s) | 422 |
| BstMBI | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| BstMCI | CGRYCG | 1 cut(s) | 355 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 272, 521, 692, 722, 872, 980, 1364 |
| BstNI | CCWGG | 2 cut(s) | 554, 1653 |
| BstSCI | CCNGG | 2 cut(s) | 552, 1651 |
| BstSFI | CTRYAG | 2 cut(s) | 1059, 1368 |
| BstSLI | GKGCMC | 2 cut(s) | 1499, 1622 |
| BstUI | CGCG | 4 cut(s) | 25, 57, 228, 1217 |
| BstV1I | GCAGC | 4 cut(s) | 295, 436, 1354, 1484 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| BstX2I | RGATCY | 2 cut(s) | 549, 1418 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1354, 1571 |
| BstYI | RGATCY | 2 cut(s) | 549, 1418 |
| BsuRI | GGCC | 3 cut(s) | 231, 883, 1806 |
| BtgI | CCRYGG | 2 cut(s) | 226, 276 |
| BtgZI | GCGATG | 1 cut(s) | 780 |
| BtrI | CACGTC | 1 cut(s) | 736 |
| BtsCI | GGATG | 2 cut(s) | 442, 709 |
| BtsI | GCAGTG | 2 cut(s) | 639, 1377 |
| BtsIMutI | CAGTG | 5 cut(s) | 639, 1308, 1354, 1377, 1497 |
| BveI | ACCTGC | 2 cut(s) | 664, 1192 |
| Cac8I | GCNNGC | 6 cut(s) | 404, 483, 487, 513, 1288, 1696 |
| CfoI | GCGC | 6 cut(s) | 275, 511, 826, 1015, 1217, 1401 |
| Cfr13I | GGNCC | 5 cut(s) | 31, 223, 557, 881, 1238 |
| Cfr42I | CCGCGG | 1 cut(s) | 229 |
| CseI | GACGC | 2 cut(s) | 58, 79 |
| Csp6I | GTAC | 4 cut(s) | 268, 337, 1272, 1716 |
| CviAII | CATG | 5 cut(s) | 340, 1016, 1235, 1448, 1529 |
| CviQI | GTAC | 4 cut(s) | 268, 337, 1272, 1716 |
| DpnI | GATC | 7 cut(s) | 245, 354, 551, 624, 1420, 1446, 1509 |
| DpnII | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 11 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 11 |
| EaeI | YGGCCR | 2 cut(s) | 229, 1804 |
| Eam1104I | CTCTTC | 2 cut(s) | 50, 1758 |
| EarI | CTCTTC | 2 cut(s) | 50, 1758 |
| Eco130I | CCWWGG | 3 cut(s) | 201, 232, 1208 |
| Eco24I | GRGCYC | 1 cut(s) | 240 |
| Eco32I | GATATC | 1 cut(s) | 463 |
| Eco47I | GGWCC | 4 cut(s) | 31, 223, 557, 1238 |
| Eco57I | CTGAAG | 3 cut(s) | 298, 1281, 1335 |
| Eco72I | CACGTG | 1 cut(s) | 1793 |
| Eco88I | CYCGRG | 1 cut(s) | 35 |
| EcoO109I | RGGNCCY | 2 cut(s) | 31, 557 |
| EcoRII | CCWGG | 2 cut(s) | 552, 1651 |
| EcoRV | GATATC | 1 cut(s) | 463 |
| EcoT14I | CCWWGG | 3 cut(s) | 201, 232, 1208 |
| EcoT38I | GRGCYC | 1 cut(s) | 240 |
| ErhI | CCWWGG | 3 cut(s) | 201, 232, 1208 |
| FaeI | CATG | 5 cut(s) | 343, 1019, 1238, 1451, 1532 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FatI | CATG | 5 cut(s) | 339, 1015, 1234, 1447, 1528 |
| FauI | CCCGC | 1 cut(s) | 646 |
| FbaI | TGATCA | 2 cut(s) | 622, 1507 |
| FblI | GTMKAC | 1 cut(s) | 15 |
| FokI | GGATG | 2 cut(s) | 449, 716 |
| FriOI | GRGCYC | 1 cut(s) | 240 |
| FspBI | CTAG | 6 cut(s) | 482, 498, 948, 1077, 1308, 1569 |
| FspI | TGCGCA | 1 cut(s) | 1400 |
| GlaI | GCGC | 6 cut(s) | 274, 510, 825, 1014, 1216, 1400 |
| GsaI | CCCAGC | 1 cut(s) | 1567 |
| HaeIII | GGCC | 3 cut(s) | 231, 883, 1806 |
| HgaI | GACGC | 2 cut(s) | 58, 79 |
| HhaI | GCGC | 6 cut(s) | 275, 511, 826, 1015, 1217, 1401 |
| Hin1I | GRCGYC | 2 cut(s) | 12, 90 |
| Hin1II | CATG | 5 cut(s) | 343, 1019, 1238, 1451, 1532 |
| Hin6I | GCGC | 6 cut(s) | 273, 509, 824, 1013, 1215, 1399 |
| HinP1I | GCGC | 6 cut(s) | 273, 509, 824, 1013, 1215, 1399 |
| HincII | GTYRAC | 2 cut(s) | 16, 1606 |
| HindII | GTYRAC | 2 cut(s) | 16, 1606 |
| HindIII | AAGCTT | 1 cut(s) | 540 |
| HinfI | GANTC | 8 cut(s) | 81, 152, 197, 206, 251, 389, 1037, 1043 |
| HphI | GGTGA | 6 cut(s) | 172, 668, 796, 934, 1043, 1652 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 1004, 1497, 1606 |
| Hpy188III | TCNNGA | 3 cut(s) | 103, 221, 241 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 1004, 1497, 1606 |
| Hpy99I | CGWCG | 3 cut(s) | 17, 20, 74 |
| HpyAV | CCTTC | 2 cut(s) | 322, 418 |
| HpyCH4III | ACNGT | 4 cut(s) | 295, 841, 1060, 1767 |
| HpyCH4IV | ACGT | 5 cut(s) | 12, 18, 735, 1708, 1792 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 272, 521, 692, 722, 872, 980, 1364 |
| HpySE526I | ACGT | 5 cut(s) | 12, 18, 735, 1708, 1792 |
| Hsp92I | GRCGYC | 2 cut(s) | 12, 90 |
| Hsp92II | CATG | 5 cut(s) | 343, 1019, 1238, 1451, 1532 |
| HspAI | GCGC | 6 cut(s) | 273, 509, 824, 1013, 1215, 1399 |
| Ksp22I | TGATCA | 2 cut(s) | 622, 1507 |
| KspI | CCGCGG | 1 cut(s) | 229 |
| Kzo9I | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| LguI | GCTCTTC | 1 cut(s) | 1758 |
| LmnI | GCTCC | 5 cut(s) | 243, 776, 833, 961, 1212 |
| Lsp1109I | GCAGC | 4 cut(s) | 295, 436, 1354, 1484 |
| LweI | GCATC | 6 cut(s) | 496, 985, 1246, 1289, 1576, 1633 |
| MaeI | CTAG | 6 cut(s) | 482, 498, 948, 1077, 1308, 1569 |
| MaeII | ACGT | 5 cut(s) | 12, 18, 735, 1708, 1792 |
| MaeIII | GTNAC | 6 cut(s) | 50, 178, 1054, 1091, 1372, 1778 |
| MalI | GATC | 7 cut(s) | 245, 354, 551, 624, 1420, 1446, 1509 |
| MbiI | CCGCTC | 2 cut(s) | 100, 263 |
| MboI | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| MboII | GAAGA | 6 cut(s) | 37, 136, 139, 1274, 1346, 1745 |
| MfeI | CAATTG | 1 cut(s) | 1118 |
| MflI | RGATCY | 2 cut(s) | 549, 1418 |
| MhlI | GDGCHC | 3 cut(s) | 240, 1499, 1622 |
| MlsI | TGGCCA | 1 cut(s) | 1806 |
| MluCI | AATT | 9 cut(s) | 776, 815, 844, 892, 905, 1050, 1072, 1118, 1410 |
| MluNI | TGGCCA | 1 cut(s) | 1806 |
| MlyI | GAGTC | 6 cut(s) | 90, 161, 215, 245, 398, 1046 |
| MmeI | TCCRAC | 2 cut(s) | 704, 1386 |
| Mox20I | TGGCCA | 1 cut(s) | 1806 |
| MscI | TGGCCA | 1 cut(s) | 1806 |
| MseI | TTAA | 4 cut(s) | 588, 608, 1245, 1515 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1233, 1452, 1551, 1728 |
| Msp20I | TGGCCA | 1 cut(s) | 1806 |
| MspA1I | CMGCKG | 2 cut(s) | 228, 1286 |
| MspR9I | CCNGG | 2 cut(s) | 554, 1653 |
| MunI | CAATTG | 1 cut(s) | 1118 |
| MvaI | CCWGG | 2 cut(s) | 554, 1653 |
| MvnI | CGCG | 4 cut(s) | 25, 57, 228, 1217 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 272, 521, 692, 722, 872, 980, 1364 |
| NdeII | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| NheI | GCTAGC | 1 cut(s) | 481 |
| NlaIII | CATG | 5 cut(s) | 343, 1019, 1238, 1451, 1532 |
| NlaIV | GGNNCC | 8 cut(s) | 32, 239, 551, 558, 678, 772, 963, 1769 |
| NmeAIII | GCCGAG | 2 cut(s) | 66, 351 |
| NmuCI | GTSAC | 5 cut(s) | 50, 178, 1054, 1091, 1372 |
| NsbI | TGCGCA | 1 cut(s) | 1400 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PciSI | GCTCTTC | 1 cut(s) | 1758 |
| PfeI | GAWTC | 2 cut(s) | 197, 1043 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 163, 1154 |
| PfoI | TCCNGGA | 1 cut(s) | 1651 |
| Ple19I | CGATCG | 1 cut(s) | 355 |
| PleI | GAGTC | 6 cut(s) | 89, 160, 214, 245, 397, 1045 |
| PmaCI | CACGTG | 1 cut(s) | 1793 |
| PmlI | CACGTG | 1 cut(s) | 1793 |
| PpsI | GAGTC | 6 cut(s) | 89, 160, 214, 245, 397, 1045 |
| Ppu21I | YACGTR | 1 cut(s) | 1793 |
| PpuMI | RGGWCCY | 2 cut(s) | 31, 557 |
| Psp5II | RGGWCCY | 2 cut(s) | 31, 557 |
| Psp6I | CCWGG | 2 cut(s) | 552, 1651 |
| PspCI | CACGTG | 1 cut(s) | 1793 |
| PspFI | CCCAGC | 1 cut(s) | 1563 |
| PspGI | CCWGG | 2 cut(s) | 552, 1651 |
| PspN4I | GGNNCC | 8 cut(s) | 32, 239, 551, 558, 678, 772, 963, 1769 |
| PspPI | GGNCC | 5 cut(s) | 31, 223, 557, 881, 1238 |
| PspPPI | RGGWCCY | 2 cut(s) | 31, 557 |
| PspXI | VCTCGAGB | 1 cut(s) | 35 |
| PstI | CTGCAG | 1 cut(s) | 1372 |
| PsuI | RGATCY | 2 cut(s) | 549, 1418 |
| PvuI | CGATCG | 1 cut(s) | 355 |
| PvuII | CAGCTG | 1 cut(s) | 1286 |
| RsaI | GTAC | 4 cut(s) | 269, 338, 1273, 1717 |
| RsaNI | GTAC | 4 cut(s) | 268, 337, 1272, 1716 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1233, 1452, 1551, 1728 |
| SacII | CCGCGG | 1 cut(s) | 229 |
| SalI | GTCGAC | 1 cut(s) | 14 |
| SapI | GCTCTTC | 1 cut(s) | 1758 |
| SaqAI | TTAA | 4 cut(s) | 588, 608, 1245, 1515 |
| Sau3AI | GATC | 7 cut(s) | 243, 352, 549, 622, 1418, 1444, 1507 |
| Sau96I | GGNCC | 5 cut(s) | 31, 223, 557, 881, 1238 |
| ScaI | AGTACT | 1 cut(s) | 1717 |
| SchI | GAGTC | 6 cut(s) | 90, 161, 215, 245, 398, 1046 |
| ScrFI | CCNGG | 2 cut(s) | 554, 1653 |
| SduI | GDGCHC | 3 cut(s) | 240, 1499, 1622 |
| SfaNI | GCATC | 6 cut(s) | 496, 985, 1246, 1289, 1576, 1633 |
| SfcI | CTRYAG | 2 cut(s) | 1059, 1368 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| Sfr303I | CCGCGG | 1 cut(s) | 229 |
| SgrBI | CCGCGG | 1 cut(s) | 229 |
| SgrDI | CGTCGACG | 1 cut(s) | 14 |
| SinI | GGWCC | 4 cut(s) | 31, 223, 557, 1238 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1233, 1452, 1551, 1728 |
| SmlI | CTYRAG | 2 cut(s) | 35, 1340 |
| SmoI | CTYRAG | 2 cut(s) | 35, 1340 |
| Sse9I | AATT | 9 cut(s) | 776, 815, 844, 892, 905, 1050, 1072, 1118, 1410 |
| SspI | AATATT | 1 cut(s) | 1811 |
| SspMI | CTAG | 6 cut(s) | 482, 498, 948, 1077, 1308, 1569 |
| StyD4I | CCNGG | 2 cut(s) | 552, 1651 |
| StyI | CCWWGG | 3 cut(s) | 201, 232, 1208 |
| TaaI | ACNGT | 4 cut(s) | 295, 841, 1060, 1767 |
| TaiI | ACGT | 5 cut(s) | 15, 21, 738, 1711, 1795 |
| TaqI | TCGA | 8 cut(s) | 15, 36, 104, 150, 195, 213, 351, 534 |
| TasI | AATT | 9 cut(s) | 776, 815, 844, 892, 905, 1050, 1072, 1118, 1410 |
| TatI | WGTACW | 2 cut(s) | 336, 1715 |
| TauI | GCSGC | 6 cut(s) | 100, 231, 266, 527, 967, 1220 |
| TfiI | GAWTC | 2 cut(s) | 197, 1043 |
| Tru1I | TTAA | 4 cut(s) | 588, 608, 1245, 1515 |
| Tru9I | TTAA | 4 cut(s) | 588, 608, 1245, 1515 |
| TscAI | CASTG | 5 cut(s) | 639, 1308, 1354, 1377, 1504 |
| TseFI | GTSAC | 5 cut(s) | 50, 178, 1054, 1091, 1372 |
| TseI | GCWGC | 4 cut(s) | 308, 449, 1367, 1472 |
| Tsp45I | GTSAC | 5 cut(s) | 50, 178, 1054, 1091, 1372 |
| TspDTI | ATGAA | 3 cut(s) | 437, 1121, 1731 |
| TspGWI | ACGGA | 5 cut(s) | 38, 263, 552, 1289, 1637 |
| TspRI | CASTG | 5 cut(s) | 639, 1308, 1354, 1377, 1504 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 163, 1154 |
| VneI | GTGCAC | 1 cut(s) | 1495 |
| VpaK11BI | GGWCC | 4 cut(s) | 31, 223, 557, 1238 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 217, 1106 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XmiI | GTMKAC | 1 cut(s) | 15 |
| XspI | CTAG | 6 cut(s) | 482, 498, 948, 1077, 1308, 1569 |
| ZraI | GACGTC | 1 cut(s) | 13 |
| ZrmI | AGTACT | 1 cut(s) | 1717 |