Rroxscaffold_5G00361570
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000851
Physical Location & Seq
Reverse (-)
42286076 .. 42288717
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361570.1

Sequence Viewer

Length: 405 bp
ATGAGGCCGAGGCCTCGCCTTGGCGCGGTGAGCCACCGGACGAGAAACAAGAAGGCAAAACAAAACCTTGGGAGACCATCGCCACCGAGTTCTTGCCGCCGCACCGCTAAAAATCGAGACCGGCGGTTGAAGAAGACCATCATCCGAACAATCAAGTCCCAAATTTGGGACGAGGCTCACGTGAACGACGCCATCCTCGAATCCTTGGAGTCGATCGAGGTTTTGGACCGCAGCCAAAGGATTCGATCTTGGACTTCGATCCCAAGTTCCTTCACTCACGAGCTTTCCCTCGATTTATCTCTTTTCAGCTCTTCCGGCTGCCTCGATTTTGGCACGGAGATCCAATTGCTAAGAAACAATTGGTTTTGCTTTGTGAACTGCTCGGTGATCATGTTTAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

134

Amino Acids

15.49

Weight (kDa)

10.57

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AciI CCGC 6 cut(s) 26, 97, 100, 105, 124, 229
AclWI GGATC 2 cut(s) 253, 334
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 20, 25, 165, 166
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 2 cut(s) 283, 309
AluI AGCT 2 cut(s) 283, 309
Alw26I GTCTC 2 cut(s) 67, 111
AlwI GGATC 2 cut(s) 253, 334
AoxI GGCC 2 cut(s) 5, 11
ApeKI GCWGC 2 cut(s) 231, 318
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 40, 397
AvaII GGWCC 1 cut(s) 226
BauI CACGAG 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 243, 305
BccI CCATC 3 cut(s) 85, 146, 200
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 2 cut(s) 67, 111
BisI GCNGC 4 cut(s) 97, 100, 232, 319
BlsI GCNGC 4 cut(s) 98, 101, 233, 320
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 67, 111
BsaJI CCNNGG 4 cut(s) 8, 19, 67, 204
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 25, 165, 166
Bse118I RCCGGY 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 8, 19, 67, 204
BseGI GGATG 2 cut(s) 141, 192
BseLI CCNNNNNNNGG 4 cut(s) 20, 25, 165, 166
BseXI GCAGC 2 cut(s) 243, 305
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 7, 13
BsiEI CGRYCG 1 cut(s) 216
BsiSI CCGG 3 cut(s) 37, 121, 315
BslFI GGGAC 2 cut(s) 142, 182
BslI CCNNNNNNNGG 4 cut(s) 20, 25, 165, 166
BsmAI GTCTC 2 cut(s) 67, 111
BsmFI GGGAC 2 cut(s) 142, 182
BsnI GGCC 2 cut(s) 7, 13
Bso31I GGTCTC 2 cut(s) 67, 111
Bsp143I GATC 5 cut(s) 213, 245, 258, 339, 387
BspACI CCGC 6 cut(s) 26, 97, 100, 105, 124, 229
BspANI GGCC 2 cut(s) 7, 13
BspFNI CGCG 1 cut(s) 26
BspPI GGATC 2 cut(s) 253, 334
BspQI GCTCTTC 1 cut(s) 316
BspTNI GGTCTC 2 cut(s) 67, 111
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 4 cut(s) 8, 19, 67, 204
BssMI GATC 5 cut(s) 213, 245, 258, 339, 387
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 3 cut(s) 19, 67, 204
Bst2BI CACGAG 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 141, 192
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 5 cut(s) 216, 248, 261, 342, 390
BstMAI GTCTC 2 cut(s) 67, 111
BstMBI GATC 5 cut(s) 213, 245, 258, 339, 387
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 30, 315
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 243, 305
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 2 cut(s) 7, 13
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 141, 192
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 197
CviAII CATG 1 cut(s) 391
CviJI RGCY 8 cut(s) 7, 13, 33, 176, 234, 283, 309, 318
CviKI_1 RGCY 8 cut(s) 7, 13, 33, 176, 234, 283, 309, 318
DdeI CTNAG 1 cut(s) 350
DpnI GATC 5 cut(s) 215, 247, 260, 341, 389
DpnII GATC 5 cut(s) 213, 245, 258, 339, 387
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 3 cut(s) 19, 67, 204
Eco147I AGGCCT 1 cut(s) 13
Eco31I GGTCTC 2 cut(s) 67, 111
Eco47I GGWCC 1 cut(s) 226
Eco72I CACGTG 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 19, 67, 204
ErhI CCWWGG 3 cut(s) 19, 67, 204
FaeI CATG 1 cut(s) 394
FaiI YATR 1 cut(s) 392
FaqI GGGAC 2 cut(s) 142, 182
FatI CATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 97, 100, 232, 319
FokI GGATG 2 cut(s) 128, 179
Fsp4HI GCNGC 4 cut(s) 97, 100, 232, 319
GlaI GCGC 1 cut(s) 25
GluI GCNGC 4 cut(s) 97, 100, 232, 319
HaeIII GGCC 2 cut(s) 7, 13
HapII CCGG 3 cut(s) 37, 121, 315
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 3 cut(s) 200, 209, 241
HpaII CCGG 3 cut(s) 37, 121, 315
HphI GGTGA 2 cut(s) 40, 397
Hpy166II GTNNAC 2 cut(s) 184, 376
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 116, 278
Hpy8I GTNNAC 2 cut(s) 184, 376
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 46, 280
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 315
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 213, 245, 258, 339, 387
LguI GCTCTTC 1 cut(s) 316
LpnPI CCDG 3 cut(s) 50, 134, 328
Lsp1109I GCAGC 2 cut(s) 243, 305
MaeII ACGT 1 cut(s) 180
MalI GATC 5 cut(s) 215, 247, 260, 341, 389
MboI GATC 5 cut(s) 213, 245, 258, 339, 387
MboII GAAGA 3 cut(s) 142, 145, 303
MfeI CAATTG 2 cut(s) 344, 358
MflI RGATCY 1 cut(s) 339
MluCI AATT 4 cut(s) 162, 344, 358, 400
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 7 cut(s) 3, 24, 166, 206, 211, 299, 332
MseI TTAA 1 cut(s) 396
MspI CCGG 3 cut(s) 37, 121, 315
MunI CAATTG 2 cut(s) 344, 358
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 30, 315
NdeII GATC 5 cut(s) 213, 245, 258, 339, 387
NlaIII CATG 1 cut(s) 394
NmeAIII GCCGAG 1 cut(s) 33
PceI AGGCCT 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 195
PfeI GAWTC 2 cut(s) 200, 241
PkrI GCNGC 4 cut(s) 98, 101, 233, 320
Ple19I CGATCG 1 cut(s) 216
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 181
PspCI CACGTG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 226
PsuI RGATCY 1 cut(s) 339
PvuI CGATCG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 4 cut(s) 97, 100, 232, 319
Sau3AI GATC 5 cut(s) 213, 245, 258, 339, 387
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 218
SetI ASST 5 cut(s) 69, 183, 222, 285, 311
SinI GGWCC 1 cut(s) 226
Sse9I AATT 4 cut(s) 162, 344, 358, 400
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 6 cut(s) 26, 97, 100, 105, 124, 229
StuI AGGCCT 1 cut(s) 13
StyI CCWWGG 3 cut(s) 19, 67, 204
TaiI ACGT 1 cut(s) 183
TaqI TCGA 8 cut(s) 115, 198, 212, 216, 244, 257, 291, 324
TasI AATT 4 cut(s) 162, 344, 358, 400
TauI GCSGC 2 cut(s) 99, 102
TfiI GAWTC 2 cut(s) 200, 241
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseI GCWGC 2 cut(s) 231, 318
TspGWI ACGGA 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.