Rh7CG335300
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000851
Physical Location & Seq
Forward (+)
37321026 .. 37322408
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG335300.1

Sequence Viewer

Length: 681 bp
ATGGCTGTACAATCTGTAGTGACAGACCCACTACCTTATAATTTGCTCGTGCCGGAAATTGTAAGATCTGAGGTGGAAGTCACTCATGTAAATGGAGAAGATGGTACAGAAAATCCATCTGTTGAAAAGACCACTGGGCCTGATCATTCTAATAGTGATACTAATGGAAATCCGACCTCCAGTGAGCAGAACAATGTGCCCCAAGCTCCCGGAAAAGAAAATGATGCATCCAACCTGTCCGTTGAGAAGGGAAAGGGCACAGAGTATGTTCGAAGTGGTGATCCCAACCGTGCAGATCTGTGTTGCAGTAATCAGAATAGTGGTCCTCGACCTGGGTTGATGGAACGTAATAGTACTGCCCATACTTACAAGTGGGATGACTCGCTAGGTATGTCACCTGAAGGAACAAGTAATGGTAAGGGCACGCTTCATTTACCTACTTTAAAACGGAATGCTATTTCTCCACTGGAAAAGTATGAGGATAAAAGATTTGCTAAGAGGAGAAAAGTAAAGAGATGGAGCGTACATGAAGAAGACACGTTAAGGGCTGGTTTGCAAGAGTATGGTAAAGGAAATTGGAAGCTTATCTTAGATGCATACCGAGATGTATTTGAAGAAAGAACTGAGGTCGATTTAAAGGACAAGTGGAGAAACATGTCAAAGTGGAGGCACTGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

226

Amino Acids

25.4

Weight (kDa)

5.93

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 171 - 219 1.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AclWI GGATC 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 4 cut(s) 9, 106, 355, 525
AfiI CCNNNNNNNGG 1 cut(s) 332
AflIII ACRYGT 2 cut(s) 537, 654
AgsI TTSAA 2 cut(s) 125, 614
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 206, 583
AluI AGCT 2 cut(s) 206, 583
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 137, 323
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 290, 387
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 3 cut(s) 201, 260, 425
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 540
BccI CCATC 4 cut(s) 95, 124, 334, 510
BciT130I CCWGG 1 cut(s) 333
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 2 cut(s) 386, 679
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 2 cut(s) 65, 295
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 210, 333
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 137, 323
BmrFI CCNGG 2 cut(s) 210, 333
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 3 cut(s) 214, 236, 583
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 332
BsaXI ACNNNNNCTCC 1 cut(s) 658
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 3 cut(s) 139, 180, 471
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 227, 382
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 2 cut(s) 60, 615
BseNI ACTGG 3 cut(s) 139, 180, 471
BseRI GAGGAG 1 cut(s) 514
BseSI GKGCMC 3 cut(s) 201, 260, 425
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 53, 210
BslI CCNNNNNNNGG 1 cut(s) 332
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 201, 260, 425
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 4 cut(s) 65, 142, 280, 295
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 61, 616
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 3 cut(s) 139, 180, 471
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 4 cut(s) 65, 142, 280, 295
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 290, 674
BstAUI TGTACA 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 4 cut(s) 69, 495, 589, 624
BstF5I GGATG 2 cut(s) 227, 382
BstKTI GATC 4 cut(s) 68, 145, 283, 298
BstMBI GATC 4 cut(s) 65, 142, 280, 295
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 2 cut(s) 208, 331
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 3 cut(s) 201, 260, 425
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 2 cut(s) 65, 295
BstYI RGATCY 2 cut(s) 65, 295
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 227, 382
BtsIMutI CAGTG 4 cut(s) 132, 187, 464, 670
Cac8I GCNNGC 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 137, 323
Csp6I GTAC 4 cut(s) 8, 105, 354, 524
CviAII CATG 3 cut(s) 86, 527, 655
CviJI RGCY 5 cut(s) 5, 139, 206, 548, 583
CviKI_1 RGCY 5 cut(s) 5, 139, 206, 548, 583
CviQI GTAC 4 cut(s) 8, 105, 354, 524
DdeI CTNAG 4 cut(s) 69, 495, 589, 624
DpnI GATC 4 cut(s) 67, 144, 282, 297
DpnII GATC 4 cut(s) 65, 142, 280, 295
DraI TTTAAA 2 cut(s) 444, 636
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 331
EcoT22I ATGCAT 2 cut(s) 229, 598
FaeI CATG 3 cut(s) 89, 530, 658
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FatI CATG 3 cut(s) 85, 526, 654
FbaI TGATCA 1 cut(s) 142
FokI GGATG 2 cut(s) 214, 389
FspBI CTAG 2 cut(s) 386, 679
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 139
HapII CCGG 2 cut(s) 53, 210
Hin1II CATG 3 cut(s) 89, 530, 658
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 1 cut(s) 380
HpaII CCGG 2 cut(s) 53, 210
HphI GGTGA 2 cut(s) 290, 387
Hpy188I TCNGA 3 cut(s) 70, 174, 315
HpyAV CCTTC 2 cut(s) 241, 395
HpyCH4III ACNGT 2 cut(s) 290, 674
HpyCH4IV ACGT 2 cut(s) 346, 539
HpyCH4V TGCA 5 cut(s) 227, 293, 306, 556, 596
HpyF3I CTNAG 4 cut(s) 69, 495, 589, 624
HpySE526I ACGT 2 cut(s) 346, 539
Hsp92II CATG 3 cut(s) 89, 530, 658
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 4 cut(s) 65, 142, 280, 295
LmnI GCTCC 2 cut(s) 211, 519
LweI GCATC 3 cut(s) 214, 236, 583
MaeI CTAG 2 cut(s) 386, 679
MaeII ACGT 2 cut(s) 346, 539
MaeIII GTNAC 4 cut(s) 19, 79, 393, 674
MalI GATC 4 cut(s) 67, 144, 282, 297
MboI GATC 4 cut(s) 65, 142, 280, 295
MboII GAAGA 4 cut(s) 110, 542, 545, 626
MflI RGATCY 2 cut(s) 65, 295
MhlI GDGCHC 3 cut(s) 201, 260, 425
MluCI AATT 3 cut(s) 40, 57, 574
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 197, 255
MnlI CCTC 7 cut(s) 64, 187, 336, 472, 492, 619, 660
Mph1103I ATGCAT 2 cut(s) 229, 598
MseI TTAA 3 cut(s) 443, 542, 635
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 2 cut(s) 53, 210
MspR9I CCNGG 2 cut(s) 210, 333
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 333
NciI CCSGG 1 cut(s) 210
NdeII GATC 4 cut(s) 65, 142, 280, 295
NlaIII CATG 3 cut(s) 89, 530, 658
NmuCI GTSAC 4 cut(s) 19, 79, 393, 674
NsiI ATGCAT 2 cut(s) 229, 598
NspI RCATGY 1 cut(s) 658
NspV TTCGAA 1 cut(s) 271
PciI ACATGT 1 cut(s) 654
PctI GAATGC 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 208
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 654
PsiI TTATAA 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspPI GGNCC 2 cut(s) 137, 323
PsuI RGATCY 2 cut(s) 65, 295
RsaI GTAC 4 cut(s) 9, 106, 355, 525
RsaNI GTAC 4 cut(s) 8, 105, 354, 524
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 3 cut(s) 443, 542, 635
Sau3AI GATC 4 cut(s) 65, 142, 280, 295
Sau96I GGNCC 2 cut(s) 137, 323
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 210, 333
SduI GDGCHC 3 cut(s) 201, 260, 425
SfaNI GCATC 3 cut(s) 214, 236, 583
SfcI CTRYAG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 3 cut(s) 40, 57, 574
SspMI CTAG 2 cut(s) 386, 679
StyD4I CCNGG 2 cut(s) 208, 331
TaaI ACNGT 2 cut(s) 290, 674
TaiI ACGT 2 cut(s) 349, 542
TaqI TCGA 3 cut(s) 271, 328, 630
TasI AATT 3 cut(s) 40, 57, 574
TatI WGTACW 2 cut(s) 7, 353
Tru1I TTAA 3 cut(s) 443, 542, 635
Tru9I TTAA 3 cut(s) 443, 542, 635
TscAI CASTG 4 cut(s) 139, 187, 471, 677
TseFI GTSAC 4 cut(s) 19, 79, 393, 674
Tsp45I GTSAC 4 cut(s) 19, 79, 393, 674
TspDTI ATGAA 2 cut(s) 419, 543
TspGWI ACGGA 2 cut(s) 229, 463
TspRI CASTG 4 cut(s) 139, 187, 471, 677
VpaK11BI GGWCC 1 cut(s) 323
XceI RCATGY 1 cut(s) 658
XspI CTAG 2 cut(s) 386, 679
ZrmI AGTACT 1 cut(s) 355
Zsp2I ATGCAT 2 cut(s) 229, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.