Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000851

Physical Location & Seq

Genomic Coordinates Forward (+)

5406025 .. 5407486

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAGTGATGGACAAATGGGTAGCTGAATTTTTCCTCCGACGCCAACTAAATCCTAGGGTTTACGCTTTTCCACTGTTATCGGCTCTGAAACCAGTAGATTCCGACGACTGTGTAAAACTCAAGCTAACTGCTGTTTTGCGGGATATCTCCAATTCCATGATTCAAGGTACCGTAGACGAAGGAATGCTTGATCTCCTCGAAATTCTTGAGAAGCTTCTGTTACAGGAACATTCGGTTATCATGGGATCTCTCAAATCTGCGTATTGCTGGACTGCTGTGGAATGCACGCTTAGGTTTATGTGGCCAGTGAATGCTTCGGATGGCTTCTTCGGTGATGCCCTTGAGAGGATTTGGAGGAATCGGATTGGGACATTGAAGGAGAAAGAGAGCGACTTGGTGACTCGTGAGTTGTTGAAATGGGAGAGTGATCTAAACAAGGCGTTTGAGGAACCTGAGATTTACCAGAAGATTCGTGAGACTAACATCAGGTACAATGCCATCTCTCATCTTAATCAGCTTCTCAAAGAGCAGTGGGCACTACTTGGATGTTCTTCTCTTGAATCAGAAGCTCGAAAGAGGTTTCTTAAGCGTAAGGATTCACCATATGCTTCCCGGAGAGGAGGTAATAGAGAGAAAGCTAATGATGTTGAAGAAGTGGGTGGTGTGGAGAATCCTGATGGGGTTGGTAAGGTGAATGAACATGAACAGGAACACGAGCCAAGTCTTAATAAGGGGGAAATGTTGGTAGCTCGAGAGCTTAAGGATTTTTTGTTGGAGATTCAAAGACTCATCGACCCTATAACAAGGCAAGATCAAGAACCTAACAATGCAATGGAGCATTCAGTTGATGTCACTCCTCAGCCTGATGGGGCAAATAGGACTGATGCAGAAGATAGTGAGGGAACATCATCGTCTAGAAGAGTCAGGCCTCATCTACCAACCCCGGAACCTCTGAATGTATCACCGTTGAAGAAAGGAAGATTAGAAAGACCGCGTCCCAGAAGGCCAATGAAATTCTGGACTTCTGAAGAAGTGGCAGCTTTGAGGGAAGGAGTTAAAGAATATGGAAAATCATGGAAAGATATCAAGAATTCATACCCTGTTGTTTTCGCTGATAGGAGCGAGGTGGATTTGAAGGATAAGTGGAGGAATTTACTTGGTCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO Myb_DNA-binding

Protein Analysis

390

Amino Acids

44.97

Weight (kDa)

5.89

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	341 - 387	1.4e-08	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	341 - 386	1.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06910 AT1G15720 AT5G58340 AT5G58340
fragaria_vesca	FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_5g00450 FvH4_5g00450 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240
malus_domestica	MD03G1052200.v1.1 MD10G1106900.v1.1 MD11G1054300.v1.1
prunus_persica	Prupe.6G041700_v2.0.a1
pyrus_communis	pycom03g04150 pycom11g04410
rosa_chinensis	RchiOBHm_Chr5g0000441 RchiOBHm_Chr5g0073101 RchiOBHm_Chr7g0218431 RchiOBHm_Chr7g0221531 RchiOBHm_Chr7g0221541
rosa_laevigata	RLG00000002155 RLG00000002374 RLG00000030867 RLG00000036363
rosa_multiflora	Rmu_co8212148.1_g000001 Rmu_co8273167.1_g000001 Rmu_sc0001680.1_g000002 Rmu_sc0003949.1_g000004 Rmu_sc0005592.1_g000024 Rmu_sc0005994.1_g000013 Rmu_sc0029255.1_g000001 Rmu_sc0029256.1_g000001 Rmu_ssc0000385.1_g000016
rosa_roxburghii	Rroxscaffold_1G00008100 Rroxscaffold_1G00008150 Rroxscaffold_1G00075720 Rroxscaffold_3G00240990 Rroxscaffold_5G00361570
rosa_rugosa	Rorug04G0383600.1 Rorug04G0383700 Rorug05G0421100 Rorug07G0177000
rosa_samantha	Rh5AG003600 Rh5AG478100 Rh5BG004800 Rh5BG498800 Rh5CG003900 Rh5CG522000 Rh5DG003700 Rh5DG510900 Rh7AG318400 Rh7BG310300 Rh7CG335200 Rh7CG335300 Rh7DG317400
rosa_wichuraiana	Rw5G000360 Rw5G044400 Rw7G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	997
AciI	CCGC	2 cut(s)	142, 995
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	5 cut(s)	29, 204, 1016, 1093, 1153
AcuI	CTGAAG	1 cut(s)	1050
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	2 cut(s)	172, 494
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflII	CTTAAG	2 cut(s)	587, 761
AgsI	TTSAA	8 cut(s)	167, 379, 418, 563, 653, 785, 973, 1138
AluBI	AGCT	9 cut(s)	26, 127, 217, 520, 572, 641, 752, 760, 1043
AluI	AGCT	9 cut(s)	26, 127, 217, 520, 572, 641, 752, 760, 1043
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	3 cut(s)	305, 929, 1007
ApeKI	GCWGC	1 cut(s)	1040
ApoI	RAATTY	5 cut(s)	29, 204, 1016, 1093, 1153
Asp718I	GGTACC	1 cut(s)	170
AspA2I	CCTAGG	1 cut(s)	56
AsuC2I	CCSGG	2 cut(s)	616, 947
AsuHPI	GGTGA	5 cut(s)	347, 412, 594, 706, 957
AvaI	CYCGRG	1 cut(s)	753
AvrII	CCTAGG	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	170
BauI	CACGAG	2 cut(s)	405, 716
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	1 cut(s)	1052
BccI	CCATC	5 cut(s)	4, 317, 509, 674, 863
BcnI	CCSGG	2 cut(s)	616, 947
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	57, 918
BfrI	CTTAAG	2 cut(s)	587, 761
BisI	GCNGC	1 cut(s)	1041
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	1042
Bme1390I	CCNGG	2 cut(s)	616, 947
BmeT110I	CYCGRG	1 cut(s)	753
BmiI	GGNNCC	3 cut(s)	172, 453, 951
BmrFI	CCNGG	2 cut(s)	616, 947
BmsI	GCATC	2 cut(s)	328, 877
Bpu10I	CCTNAGC	2 cut(s)	293, 861
BpuEI	CTTGAG	3 cut(s)	107, 230, 365
BpuMI	CCSGG	2 cut(s)	616, 947
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	56, 945
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	95, 308
Bse3DI	GCAATG	1 cut(s)	840
BseDI	CCNNGG	2 cut(s)	56, 945
BseGI	GGATG	2 cut(s)	328, 554
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	2 cut(s)	447, 875
BseNI	ACTGG	2 cut(s)	95, 308
BseRI	GAGGAG	3 cut(s)	188, 636, 849
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	1052
Bsh1236I	CGCG	1 cut(s)	997
BshFI	GGCC	3 cut(s)	307, 931, 1009
BshNI	GGYRCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	616, 947
BslFI	GGGAC	2 cut(s)	385, 984
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	385, 984
BsmI	GAATGC	4 cut(s)	192, 290, 319, 841
BsnI	GGCC	3 cut(s)	307, 931, 1009
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	4 cut(s)	193, 248, 430, 814
BspACI	CCGC	2 cut(s)	142, 995
BspANI	GGCC	3 cut(s)	307, 931, 1009
BspCNI	CTCAG	2 cut(s)	448, 874
BspFNI	CGCG	1 cut(s)	997
BspLI	GGNNCC	3 cut(s)	172, 453, 951
BspPI	GGATC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	170
BspTI	CTTAAG	2 cut(s)	587, 761
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	95, 308
BssECI	CCNNGG	2 cut(s)	56, 945
BssMI	GATC	4 cut(s)	193, 248, 430, 814
BssNI	GRCGYC	1 cut(s)	43
BssSI	CACGAG	2 cut(s)	405, 716
BssT1I	CCWWGG	1 cut(s)	56
Bst2BI	CACGAG	2 cut(s)	405, 716
Bst4CI	ACNGT	4 cut(s)	78, 113, 175, 969
Bst6I	CTCTTC	1 cut(s)	916
BstACI	GRCGYC	1 cut(s)	43
BstAFI	CTTAAG	2 cut(s)	587, 761
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	293, 456, 861
BstF5I	GGATG	2 cut(s)	328, 554
BstFNI	CGCG	1 cut(s)	997
BstKTI	GATC	4 cut(s)	196, 251, 433, 817
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	193, 248, 430, 814
BstSCI	CCNGG	2 cut(s)	614, 945
BstSLI	GKGCMC	1 cut(s)	541
BstUI	CGCG	1 cut(s)	997
BstV1I	GCAGC	1 cut(s)	1052
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	307, 931, 1009
BtsCI	GGATG	2 cut(s)	328, 554
BtsI	GCAGTG	1 cut(s)	539
BtsIMutI	CAGTG	3 cut(s)	74, 315, 539
Cac8I	GCNNGC	1 cut(s)	290
CseI	GACGC	2 cut(s)	51, 986
Csp6I	GTAC	2 cut(s)	171, 493
CviAII	CATG	4 cut(s)	160, 244, 704, 1077
CviQI	GTAC	2 cut(s)	171, 493
DdeI	CTNAG	3 cut(s)	293, 456, 861
DpnI	GATC	4 cut(s)	195, 250, 432, 816
DpnII	GATC	4 cut(s)	193, 248, 430, 814
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	916
EarI	CTCTTC	1 cut(s)	916
Eco130I	CCWWGG	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	931
Eco32I	GATATC	2 cut(s)	148, 1087
Eco57I	CTGAAG	1 cut(s)	1050
Eco88I	CYCGRG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	1093
EcoRV	GATATC	2 cut(s)	148, 1087
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	4 cut(s)	163, 247, 707, 1080
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	385, 984
FatI	CATG	4 cut(s)	159, 243, 703, 1076
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	1041
FokI	GGATG	2 cut(s)	335, 561
Fsp4HI	GCNGC	1 cut(s)	1041
FspBI	CTAG	2 cut(s)	57, 918
GluI	GCNGC	1 cut(s)	1041
HaeIII	GGCC	3 cut(s)	307, 931, 1009
HapII	CCGG	2 cut(s)	616, 947
HgaI	GACGC	2 cut(s)	51, 986
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	163, 247, 707, 1080
HindIII	AAGCTT	1 cut(s)	215
HpaII	CCGG	2 cut(s)	616, 947
HphI	GGTGA	5 cut(s)	347, 412, 594, 706, 957
Hpy166II	GTNNAC	2 cut(s)	64, 178
Hpy188I	TCNGA	8 cut(s)	41, 90, 106, 322, 366, 568, 957, 1030
Hpy8I	GTNNAC	2 cut(s)	64, 178
Hpy99I	CGWCG	2 cut(s)	45, 110
HpyAV	CCTTC	5 cut(s)	176, 373, 999, 1046, 1132
HpyCH4III	ACNGT	4 cut(s)	78, 113, 175, 969
HpyCH4V	TGCA	3 cut(s)	288, 833, 890
HpyF3I	CTNAG	3 cut(s)	293, 456, 861
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	4 cut(s)	163, 247, 707, 1080
KpnI	GGTACC	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	193, 248, 430, 814
LmnI	GCTCC	2 cut(s)	838, 1122
Lsp1109I	GCAGC	1 cut(s)	1052
LweI	GCATC	2 cut(s)	328, 877
MaeI	CTAG	2 cut(s)	57, 918
MaeIII	GTNAC	3 cut(s)	222, 400, 853
MalI	GATC	4 cut(s)	195, 250, 432, 816
MboI	GATC	4 cut(s)	193, 248, 430, 814
MboII	GAAGA	9 cut(s)	322, 481, 546, 665, 905, 933, 985, 993, 1043
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	541
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	6 cut(s)	29, 154, 204, 1016, 1093, 1153
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	3 cut(s)	397, 783, 933
MmeI	TCCRAC	3 cut(s)	64, 129, 756
Mox20I	TGGCCA	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	5 cut(s)	513, 588, 729, 762, 1059
Msp20I	TGGCCA	1 cut(s)	307
MspCI	CTTAAG	2 cut(s)	587, 761
MspI	CCGG	2 cut(s)	616, 947
MspR9I	CCNGG	2 cut(s)	616, 947
Mva1269I	GAATGC	4 cut(s)	192, 290, 319, 841
MvnI	CGCG	1 cut(s)	997
NciI	CCSGG	2 cut(s)	616, 947
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	4 cut(s)	193, 248, 430, 814
NlaIII	CATG	4 cut(s)	163, 247, 707, 1080
NlaIV	GGNNCC	3 cut(s)	172, 453, 951
NmuCI	GTSAC	2 cut(s)	400, 853
PaeR7I	CTCGAG	1 cut(s)	753
PceI	AGGCCT	1 cut(s)	931
PctI	GAATGC	4 cut(s)	192, 290, 319, 841
PfeI	GAWTC	8 cut(s)	101, 163, 361, 472, 563, 599, 673, 781
PflFI	GACNNNGTC	1 cut(s)	996
PfoI	TCCNGGA	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	1042
PleI	GAGTC	3 cut(s)	397, 783, 932
PpsI	GAGTC	3 cut(s)	397, 783, 932
PspN4I	GGNNCC	3 cut(s)	172, 453, 951
PsuI	RGATCY	1 cut(s)	248
PsyI	GACNNNGTC	1 cut(s)	996
RsaI	GTAC	2 cut(s)	172, 494
RsaNI	GTAC	2 cut(s)	171, 493
SaqAI	TTAA	5 cut(s)	513, 588, 729, 762, 1059
SatI	GCNGC	1 cut(s)	1041
Sau3AI	GATC	4 cut(s)	193, 248, 430, 814
SchI	GAGTC	3 cut(s)	397, 783, 933
ScrFI	CCNGG	2 cut(s)	616, 947
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	2 cut(s)	328, 877
Sfr274I	CTCGAG	1 cut(s)	753
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	6 cut(s)	122, 209, 344, 587, 753, 761
SmoI	CTYRAG	6 cut(s)	122, 209, 344, 587, 753, 761
Sse9I	AATT	6 cut(s)	29, 154, 204, 1016, 1093, 1153
SseBI	AGGCCT	1 cut(s)	931
SsiI	CCGC	2 cut(s)	142, 995
SspMI	CTAG	2 cut(s)	57, 918
StuI	AGGCCT	1 cut(s)	931
StyD4I	CCNGG	2 cut(s)	614, 945
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	4 cut(s)	78, 113, 175, 969
TaqI	TCGA	4 cut(s)	201, 574, 754, 795
TasI	AATT	6 cut(s)	29, 154, 204, 1016, 1093, 1153
TfiI	GAWTC	8 cut(s)	101, 163, 361, 472, 563, 599, 673, 781
Tru1I	TTAA	5 cut(s)	513, 588, 729, 762, 1059
Tru9I	TTAA	5 cut(s)	513, 588, 729, 762, 1059
TscAI	CASTG	3 cut(s)	81, 315, 539
TseFI	GTSAC	2 cut(s)	400, 853
TseI	GCWGC	1 cut(s)	1040
Tsp45I	GTSAC	2 cut(s)	400, 853
TspDTI	ATGAA	4 cut(s)	714, 720, 1028, 1086
TspRI	CASTG	3 cut(s)	81, 315, 539
Tth111I	GACNNNGTC	1 cut(s)	996
Vha464I	CTTAAG	2 cut(s)	587, 761
XapI	RAATTY	5 cut(s)	29, 204, 1016, 1093, 1153
XbaI	TCTAGA	1 cut(s)	917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1017
XhoI	CTCGAG	1 cut(s)	753
XmaJI	CCTAGG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	57, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.