AT5G58340
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000851
Physical Location & Seq
Forward (+)
23582495 .. 23585148
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58340.2

Sequence Viewer

Length: 1347 bp
ATGGAGGTCATTGATCAATGGGTTGCTGAATTTTTCCTCCTTCGACAACACAATCCTAGGGCTTCCCCTATTAATCTGATTTCGGCGCTAAAATTAGGAGATTCCTCCGACTGCATAAAGCTCAAGATATCTTCCGTCTTGCGTGACATCTCCAATTCATTGATCCGAGGTACGATTGATGAGGGAATGCTCGATCTTCTCGAGATTCTTGAGAAGCTTCTCTTGCAGCAACATTCGCTACTCATGGATTCTCACAAGTCTGCTTATTGCTGGACGGCTACTGAGTGTACGCTTAGATTTATGTGGCCAATGTTTGCTTCGGATGGTTTGTTCACCGATGCGCTTGAGAGGATATGGACGAAGAGGATTGGGATTTTGAAGGAGAGTGGTAGCGATTTGGTGACTTGTGACTTGTTGAAATGGGAGAGTGATTTGAAGAAGGCCCTTGGAGATCCTGAGCTCTATCAGCGAATTCGTGAGACTAACATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCAAAGAACAGTGGGCATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAAAGAAGGTTTCTTAAGCGCAAGGCTGTGAACGTAGAGGGTGATGTTGTTGACAACAGAGGGGATCAAAGTGATGTTGATGAAAGCACGAGACGTTTTGGGAGTGATACTATTGATATCGCCAACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATGGTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGGAGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAATGGCTGCTCGAGAGCTGAAGGAATATTTAGTAGAGATTCAAGGACACATCGACCCTTCCACTAGGCAAGGGGAAGAACCTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCGCCTACTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAATGTAAATGAGAAAGGTTCGGATAGTCAGGAAACATGGTCTAGCAGAGTTCGGCCTCGTCGACCAACCCCTGTAACTCTGAGTGTATCTCCATTAAAGAAAGGCGGATTGGCGAAACCACATGTCAGGAGACCAAAGAAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAGTATGGTAAATCATGGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCGGAGAGGACAGAGGTGGATTTGAAAGATAAATGGAGGAACTTAGTCGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

448

Amino Acids

50.42

Weight (kDa)

5.08

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 400 - 445 3e-07 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 400 - 445 7.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1114
AccII CGCG 1 cut(s) 706
AciI CCGC 3 cut(s) 995, 1158, 1292
AclWI GGATC 3 cut(s) 157, 446, 645
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 3 cut(s) 29, 471, 1193
AcuI CTGAAG 1 cut(s) 914
AdeI CACNNNGTG 1 cut(s) 826
AfaI GTAC 3 cut(s) 172, 289, 494
AflII CTTAAG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 1174
AgsI TTSAA 6 cut(s) 379, 418, 436, 563, 917, 1315
AjuI GAANNNNNNNTTGG 4 cut(s) 301, 333, 1145, 1177
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 7 cut(s) 121, 217, 460, 520, 572, 892, 1220
AluI AGCT 7 cut(s) 121, 217, 460, 520, 572, 892, 1220
Alw21I GWGCWC 3 cut(s) 462, 822, 835
Alw26I GTCTC 5 cut(s) 473, 658, 735, 864, 1177
Alw44I GTGCAC 1 cut(s) 831
AlwI GGATC 3 cut(s) 157, 446, 645
Ama87I CYCGRG 3 cut(s) 200, 885, 1002
AoxI GGCC 3 cut(s) 305, 441, 1106
ApaLI GTGCAC 1 cut(s) 831
ApeKI GCWGC 3 cut(s) 226, 806, 881
ApoI RAATTY 3 cut(s) 29, 471, 1193
AseI ATTAAT 1 cut(s) 72
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 4 cut(s) 88, 343, 594, 706
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 6 cut(s) 325, 412, 626, 722, 770, 1018
AvaI CYCGRG 3 cut(s) 200, 885, 1002
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 835
BalI TGGCCA 1 cut(s) 307
BanII GRGCYC 1 cut(s) 462
BauI CACGAG 1 cut(s) 661
Bbv12I GWGCWC 3 cut(s) 462, 822, 835
BbvI GCAGC 3 cut(s) 238, 818, 868
BccI CCATC 3 cut(s) 317, 749, 779
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 863, 897
BclI TGATCA 2 cut(s) 13, 970
BcoDI GTCTC 5 cut(s) 473, 658, 735, 864, 1177
BfaI CTAG 3 cut(s) 57, 939, 1095
BfmI CTRYAG 1 cut(s) 1281
BfoI RGCGCY 1 cut(s) 89
BfrI CTTAAG 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 701
BisI GCNGC 3 cut(s) 227, 807, 882
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 3 cut(s) 228, 808, 883
BmeT110I CYCGRG 3 cut(s) 200, 885, 1002
BmgT120I GGNCC 1 cut(s) 442
BmsI GCATC 2 cut(s) 328, 1055
BplI GAGNNNNNCTC 4 cut(s) 541, 573, 1126, 1158
BpmI CTGGAG 1 cut(s) 797
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 3 cut(s) 107, 230, 365
BsaI GGTCTC 1 cut(s) 1177
BsaJI CCNNGG 3 cut(s) 56, 166, 445
Bse1I ACTGG 1 cut(s) 1021
BseDI CCNNGG 3 cut(s) 56, 166, 445
BseGI GGATG 1 cut(s) 328
BseMII CTCAG 6 cut(s) 273, 447, 530, 990, 1124, 1214
BseNI ACTGG 1 cut(s) 1021
BseRI GAGGAG 2 cut(s) 830, 981
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 3 cut(s) 238, 818, 868
Bsh1236I CGCG 1 cut(s) 706
BshFI GGCC 3 cut(s) 307, 443, 1108
BsiHKAI GWGCWC 3 cut(s) 462, 822, 835
BsiHKCI CYCGRG 3 cut(s) 200, 885, 1002
BsmAI GTCTC 5 cut(s) 473, 658, 735, 864, 1177
BsmBI CGTCTC 2 cut(s) 658, 864
BsmI GAATGC 2 cut(s) 192, 808
BsnI GGCC 3 cut(s) 307, 443, 1108
Bso31I GGTCTC 1 cut(s) 1177
BsoBI CYCGRG 3 cut(s) 200, 885, 1002
Bsp1286I GDGCHC 3 cut(s) 462, 822, 835
Bsp143I GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
BspACI CCGC 3 cut(s) 995, 1158, 1292
BspANI GGCC 3 cut(s) 307, 443, 1108
BspCNI CTCAG 6 cut(s) 274, 448, 529, 989, 1125, 1215
BspFNI CGCG 1 cut(s) 706
BspPI GGATC 3 cut(s) 157, 446, 645
BspTI CTTAAG 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 1177
BsrI ACTGG 1 cut(s) 1021
BssECI CCNNGG 3 cut(s) 56, 166, 445
BssMI GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
BssSI CACGAG 1 cut(s) 661
BssT1I CCWWGG 2 cut(s) 56, 445
Bst2BI CACGAG 1 cut(s) 661
Bst4CI ACNGT 4 cut(s) 534, 826, 962, 1285
Bst6I CTCTTC 1 cut(s) 356
BstAFI CTTAAG 1 cut(s) 587
BstDEI CTNAG 8 cut(s) 282, 293, 456, 516, 976, 1133, 1223, 1333
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 706
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 4 cut(s) 88, 343, 594, 706
BstKTI GATC 7 cut(s) 16, 165, 196, 454, 640, 841, 973
BstMAI GTCTC 5 cut(s) 473, 658, 735, 864, 1177
BstMBI GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
BstMWI GCNNNNNNNGC 4 cut(s) 223, 235, 466, 701
BstNSI RCATGY 1 cut(s) 1178
BstSFI CTRYAG 1 cut(s) 1281
BstSLI GKGCMC 1 cut(s) 835
BstUI CGCG 1 cut(s) 706
BstV1I GCAGC 3 cut(s) 238, 818, 868
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 3 cut(s) 307, 443, 1108
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 4 cut(s) 495, 539, 831, 967
CfoI GCGC 4 cut(s) 88, 343, 594, 706
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 3 cut(s) 171, 288, 493
CviAII CATG 5 cut(s) 244, 848, 1089, 1175, 1254
CviQI GTAC 3 cut(s) 171, 288, 493
DdeI CTNAG 8 cut(s) 282, 293, 456, 516, 976, 1133, 1223, 1333
DpnI GATC 7 cut(s) 15, 164, 195, 453, 639, 840, 972
DpnII GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
DraIII CACNNNGTG 1 cut(s) 826
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 2 cut(s) 984, 1173
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 56, 445
Eco24I GRGCYC 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 1177
Eco32I GATATC 2 cut(s) 129, 691
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 914
Eco88I CYCGRG 3 cut(s) 200, 885, 1002
EcoICRI GAGCTC 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 471
EcoRV GATATC 2 cut(s) 129, 691
EcoT14I CCWWGG 2 cut(s) 56, 445
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 56, 445
Esp3I CGTCTC 2 cut(s) 658, 864
FaeI CATG 5 cut(s) 247, 851, 1092, 1178, 1257
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FatI CATG 5 cut(s) 243, 847, 1088, 1174, 1253
FbaI TGATCA 2 cut(s) 13, 970
FblI GTMKAC 1 cut(s) 1114
Fnu4HI GCNGC 3 cut(s) 227, 807, 882
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 3 cut(s) 227, 807, 882
FspBI CTAG 3 cut(s) 57, 939, 1095
GlaI GCGC 4 cut(s) 87, 342, 593, 705
GluI GCNGC 3 cut(s) 227, 807, 882
GsuI CTGGAG 1 cut(s) 797
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 3 cut(s) 307, 443, 1108
HhaI GCGC 4 cut(s) 88, 343, 594, 706
Hin1II CATG 5 cut(s) 247, 851, 1092, 1178, 1257
Hin6I GCGC 4 cut(s) 86, 341, 592, 704
HinP1I GCGC 4 cut(s) 86, 341, 592, 704
HincII GTYRAC 2 cut(s) 625, 1115
HindII GTYRAC 2 cut(s) 625, 1115
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 5 cut(s) 101, 205, 248, 563, 913
HphI GGTGA 6 cut(s) 325, 412, 626, 722, 770, 1018
Hpy166II GTNNAC 7 cut(s) 288, 333, 495, 604, 625, 833, 1115
Hpy188I TCNGA 8 cut(s) 78, 109, 167, 322, 1051, 1075, 1134, 1224
Hpy8I GTNNAC 7 cut(s) 288, 333, 495, 604, 625, 833, 1115
Hpy99I CGWCG 1 cut(s) 1116
HpyAV CCTTC 8 cut(s) 50, 373, 433, 573, 755, 889, 942, 1223
HpyCH4III ACNGT 4 cut(s) 534, 826, 962, 1285
HpyCH4IV ACGT 2 cut(s) 606, 667
HpyCH4V TGCA 5 cut(s) 114, 226, 806, 833, 965
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 235, 466, 701
HpyF3I CTNAG 8 cut(s) 282, 293, 456, 516, 976, 1133, 1223, 1333
HpySE526I ACGT 2 cut(s) 606, 667
Hsp92II CATG 5 cut(s) 247, 851, 1092, 1178, 1257
HspAI GCGC 4 cut(s) 86, 341, 592, 704
Ksp22I TGATCA 2 cut(s) 13, 970
Kzo9I GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 3 cut(s) 238, 818, 868
LweI GCATC 2 cut(s) 328, 1055
MaeI CTAG 3 cut(s) 57, 939, 1095
MaeII ACGT 2 cut(s) 606, 667
MaeIII GTNAC 5 cut(s) 143, 400, 407, 985, 1126
MalI GATC 7 cut(s) 15, 164, 195, 453, 639, 840, 972
MboI GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
MboII GAAGA 6 cut(s) 123, 188, 373, 448, 962, 1220
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 3 cut(s) 462, 822, 835
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 6 cut(s) 29, 92, 154, 471, 966, 1193
MluNI TGGCCA 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 132
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MseI TTAA 3 cut(s) 72, 588, 1148
Msp20I TGGCCA 1 cut(s) 307
MspCI CTTAAG 1 cut(s) 587
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 2 cut(s) 192, 808
MvnI CGCG 1 cut(s) 706
MwoI GCNNNNNNNGC 4 cut(s) 223, 235, 466, 701
NdeII GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
NlaIII CATG 5 cut(s) 247, 851, 1092, 1178, 1257
NmuCI GTSAC 4 cut(s) 143, 400, 407, 985
NspI RCATGY 1 cut(s) 1178
PaeR7I CTCGAG 2 cut(s) 200, 885
PciI ACATGT 1 cut(s) 1174
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 1111
PctI GAATGC 2 cut(s) 192, 808
PfeI GAWTC 5 cut(s) 101, 205, 248, 563, 913
PkrI GCNGC 3 cut(s) 228, 808, 883
PscI ACATGT 1 cut(s) 1174
PshBI ATTAAT 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 442
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 3 cut(s) 172, 289, 494
RsaNI GTAC 3 cut(s) 171, 288, 493
SacI GAGCTC 1 cut(s) 462
SalI GTCGAC 1 cut(s) 1113
SaqAI TTAA 3 cut(s) 72, 588, 1148
SatI GCNGC 3 cut(s) 227, 807, 882
Sau3AI GATC 7 cut(s) 13, 162, 193, 451, 637, 838, 970
Sau96I GGNCC 1 cut(s) 442
SduI GDGCHC 3 cut(s) 462, 822, 835
SfaNI GCATC 2 cut(s) 328, 1055
SfcI CTRYAG 1 cut(s) 1281
Sfr274I CTCGAG 2 cut(s) 200, 885
SlaI CTCGAG 2 cut(s) 200, 885
SmlI CTYRAG 6 cut(s) 122, 200, 209, 344, 587, 885
SmoI CTYRAG 6 cut(s) 122, 200, 209, 344, 587, 885
Sse9I AATT 6 cut(s) 29, 92, 154, 471, 966, 1193
SsiI CCGC 3 cut(s) 995, 1158, 1292
SspI AATATT 1 cut(s) 902
SspMI CTAG 3 cut(s) 57, 939, 1095
SstI GAGCTC 1 cut(s) 462
StyI CCWWGG 2 cut(s) 56, 445
TaaI ACNGT 4 cut(s) 534, 826, 962, 1285
TaiI ACGT 2 cut(s) 609, 670
TaqI TCGA 6 cut(s) 43, 192, 201, 886, 927, 1114
TasI AATT 6 cut(s) 29, 92, 154, 471, 966, 1193
TfiI GAWTC 5 cut(s) 101, 205, 248, 563, 913
Tru1I TTAA 3 cut(s) 72, 588, 1148
Tru9I TTAA 3 cut(s) 72, 588, 1148
TscAI CASTG 4 cut(s) 502, 539, 831, 967
TseFI GTSAC 4 cut(s) 143, 400, 407, 985
TseI GCWGC 3 cut(s) 226, 806, 881
Tsp45I GTSAC 4 cut(s) 143, 400, 407, 985
TspDTI ATGAA 2 cut(s) 147, 669
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 4 cut(s) 502, 539, 831, 967
Vha464I CTTAAG 1 cut(s) 587
VneI GTGCAC 1 cut(s) 831
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 3 cut(s) 29, 471, 1193
XceI RCATGY 1 cut(s) 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 1194
XhoI CTCGAG 2 cut(s) 200, 885
XmaJI CCTAGG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 1114
XspI CTAG 3 cut(s) 57, 939, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.