SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 573 - 621 | 7.2e-07 | Myb-like DNA-binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1245 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 11, 179 |
| AatII | GACGTC | 1 cut(s) | 15 |
| Acc36I | ACCTGC | 1 cut(s) | 1045 |
| AccB1I | GGYRCC | 1 cut(s) | 739 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 961 |
| AccBSI | CCGCTC | 1 cut(s) | 100 |
| AccI | GTMKAC | 1 cut(s) | 15 |
| AccII | CGCG | 6 cut(s) | 25, 95, 231, 284, 829, 880 |
| AclWI | GGATC | 3 cut(s) | 187, 351, 1481 |
| AcoI | YGGCCR | 1 cut(s) | 232 |
| AcsI | RAATTY | 2 cut(s) | 302, 1056 |
| AcuI | CTGAAG | 3 cut(s) | 162, 1188, 1626 |
| AcyI | GRCGYC | 1 cut(s) | 12 |
| AfaI | GTAC | 7 cut(s) | 272, 329, 691, 1215, 1312, 1561, 1731 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 936, 961, 1538 |
| AflII | CTTAAG | 2 cut(s) | 1097, 1193 |
| AflIII | ACRYGT | 2 cut(s) | 1743, 1860 |
| AgsI | TTSAA | 6 cut(s) | 127, 415, 775, 1034, 1331, 1820 |
| AjnI | CCWGG | 3 cut(s) | 33, 204, 1537 |
| AluBI | AGCT | 7 cut(s) | 397, 472, 533, 845, 1109, 1412, 1789 |
| AluI | AGCT | 7 cut(s) | 397, 472, 533, 845, 1109, 1412, 1789 |
| Alw21I | GWGCWC | 1 cut(s) | 296 |
| Alw26I | GTCTC | 2 cut(s) | 59, 945 |
| Alw44I | GTGCAC | 1 cut(s) | 292 |
| AlwI | GGATC | 3 cut(s) | 187, 351, 1481 |
| AoxI | GGCC | 4 cut(s) | 232, 255, 567, 1343 |
| ApaLI | GTGCAC | 1 cut(s) | 292 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| ApoI | RAATTY | 2 cut(s) | 302, 1056 |
| AspLEI | GCGC | 5 cut(s) | 97, 278, 502, 829, 880 |
| AspS9I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1091, 1343, 1529 |
| AsuII | TTCGAA | 1 cut(s) | 1477 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaII | GGWCC | 5 cut(s) | 31, 226, 548, 1091, 1529 |
| BaeGI | GKGCMC | 5 cut(s) | 296, 1075, 1407, 1466, 1631 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 681, 714, 888, 921 |
| BanI | GGYRCC | 1 cut(s) | 739 |
| BauI | CACGAG | 1 cut(s) | 1253 |
| BbsI | GAAGAC | 2 cut(s) | 137, 1746 |
| Bbv12I | GWGCWC | 1 cut(s) | 296 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BceAI | ACGGC | 3 cut(s) | 74, 263, 554 |
| BciT130I | CCWGG | 3 cut(s) | 35, 206, 1539 |
| BciVI | GTATCC | 1 cut(s) | 1168 |
| BclI | TGATCA | 1 cut(s) | 1348 |
| BcoDI | GTCTC | 2 cut(s) | 59, 945 |
| BfaI | CTAG | 4 cut(s) | 473, 489, 1592, 1885 |
| BfmI | CTRYAG | 1 cut(s) | 1221 |
| BfrI | CTTAAG | 2 cut(s) | 1097, 1193 |
| BfuAI | ACCTGC | 1 cut(s) | 1045 |
| BfuI | GTATCC | 1 cut(s) | 1168 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 263 |
| BglII | AGATCT | 2 cut(s) | 1271, 1501 |
| BisI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 881 |
| BlsI | GCNGC | 5 cut(s) | 99, 233, 268, 442, 882 |
| BmcAI | AGTACT | 1 cut(s) | 1561 |
| Bme1390I | CCNGG | 3 cut(s) | 35, 206, 1539 |
| Bme18I | GGWCC | 5 cut(s) | 31, 226, 548, 1091, 1529 |
| BmgT120I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1091, 1343, 1529 |
| BmiI | GGNNCC | 2 cut(s) | 32, 741 |
| BmrFI | CCNGG | 3 cut(s) | 35, 206, 1539 |
| BmrI | ACTGGG | 2 cut(s) | 738, 1350 |
| BmsI | GCATC | 6 cut(s) | 487, 1120, 1142, 1420, 1442, 1789 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BmuI | ACTGGG | 2 cut(s) | 738, 1350 |
| BpiI | GAAGAC | 2 cut(s) | 137, 1746 |
| BpmI | CTGGAG | 4 cut(s) | 56, 227, 837, 1369 |
| Bpu14I | TTCGAA | 1 cut(s) | 1477 |
| BsaAI | YACGTR | 1 cut(s) | 1156 |
| BsaHI | GRCGYC | 1 cut(s) | 12 |
| BsaI | GGTCTC | 2 cut(s) | 59, 945 |
| BsaJI | CCNNGG | 6 cut(s) | 204, 229, 235, 249, 1061, 1538 |
| BsaWI | WCCGGW | 1 cut(s) | 667 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 834, 864, 1864 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 936, 961, 1538 |
| Bse1I | ACTGG | 4 cut(s) | 122, 733, 1345, 1386 |
| BseBI | CCWGG | 3 cut(s) | 35, 206, 1539 |
| BseDI | CCNNGG | 6 cut(s) | 204, 229, 235, 249, 1061, 1538 |
| BseGI | GGATG | 3 cut(s) | 486, 1433, 1588 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 936, 961, 1538 |
| BseMII | CTCAG | 4 cut(s) | 494, 1016, 1266, 1821 |
| BseNI | ACTGG | 4 cut(s) | 122, 733, 1345, 1386 |
| BseRI | GAGGAG | 4 cut(s) | 35, 131, 392, 1720 |
| BseSI | GKGCMC | 5 cut(s) | 296, 1075, 1407, 1466, 1631 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| BsgI | GTGCAG | 1 cut(s) | 1518 |
| Bsh1236I | CGCG | 6 cut(s) | 25, 95, 231, 284, 829, 880 |
| BshFI | GGCC | 4 cut(s) | 234, 257, 569, 1345 |
| BshNI | GGYRCC | 1 cut(s) | 739 |
| BsiHKAI | GWGCWC | 1 cut(s) | 296 |
| BsiSI | CCGG | 2 cut(s) | 668, 1259 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 936, 961, 1538 |
| BsmAI | GTCTC | 2 cut(s) | 59, 945 |
| BsmI | GAATGC | 1 cut(s) | 1663 |
| BsnI | GGCC | 4 cut(s) | 234, 257, 569, 1345 |
| Bso31I | GGTCTC | 2 cut(s) | 59, 945 |
| Bsp119I | TTCGAA | 1 cut(s) | 1477 |
| Bsp1286I | GDGCHC | 5 cut(s) | 296, 1075, 1407, 1466, 1631 |
| Bsp1407I | TGTACA | 2 cut(s) | 1213, 1729 |
| Bsp143I | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| Bsp68I | TCGCGA | 1 cut(s) | 284 |
| BspANI | GGCC | 4 cut(s) | 234, 257, 569, 1345 |
| BspCNI | CTCAG | 4 cut(s) | 495, 1017, 1267, 1822 |
| BspFNI | CGCG | 6 cut(s) | 25, 95, 231, 284, 829, 880 |
| BspLI | GGNNCC | 2 cut(s) | 32, 741 |
| BspMI | ACCTGC | 1 cut(s) | 1045 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BspPI | GGATC | 3 cut(s) | 187, 351, 1481 |
| BspT104I | TTCGAA | 1 cut(s) | 1477 |
| BspT107I | GGYRCC | 1 cut(s) | 739 |
| BspTI | CTTAAG | 2 cut(s) | 1097, 1193 |
| BspTNI | GGTCTC | 2 cut(s) | 59, 945 |
| BsrBI | CCGCTC | 1 cut(s) | 100 |
| BsrGI | TGTACA | 2 cut(s) | 1213, 1729 |
| BsrI | ACTGG | 4 cut(s) | 122, 733, 1345, 1386 |
| BssECI | CCNNGG | 6 cut(s) | 204, 229, 235, 249, 1061, 1538 |
| BssMI | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| BssNI | GRCGYC | 1 cut(s) | 12 |
| BssSI | CACGAG | 1 cut(s) | 1253 |
| BssT1I | CCWWGG | 1 cut(s) | 235 |
| Bst2BI | CACGAG | 1 cut(s) | 1253 |
| Bst2UI | CCWGG | 3 cut(s) | 35, 206, 1539 |
| Bst4CI | ACNGT | 7 cut(s) | 136, 298, 919, 968, 1016, 1496, 1880 |
| BstACI | GRCGYC | 1 cut(s) | 12 |
| BstAFI | CTTAAG | 2 cut(s) | 1097, 1193 |
| BstAUI | TGTACA | 2 cut(s) | 1213, 1729 |
| BstBAI | YACGTR | 1 cut(s) | 1156 |
| BstBI | TTCGAA | 1 cut(s) | 1477 |
| BstC8I | GCNNGC | 3 cut(s) | 395, 474, 1631 |
| BstDEI | CTNAG | 9 cut(s) | 7, 503, 693, 1025, 1076, 1275, 1701, 1795, 1830 |
| BstDSI | CCRYGG | 2 cut(s) | 229, 249 |
| BstEII | GGTNACC | 2 cut(s) | 950, 996 |
| BstF5I | GGATG | 3 cut(s) | 486, 1433, 1588 |
| BstFNI | CGCG | 6 cut(s) | 25, 95, 231, 284, 829, 880 |
| BstHHI | GCGC | 5 cut(s) | 97, 278, 502, 829, 880 |
| BstKTI | GATC | 6 cut(s) | 195, 346, 1274, 1351, 1489, 1504 |
| BstMAI | GTCTC | 2 cut(s) | 59, 945 |
| BstMBI | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 263, 275 |
| BstNI | CCWGG | 3 cut(s) | 35, 206, 1539 |
| BstNSI | RCATGY | 1 cut(s) | 1864 |
| BstPI | GGTNACC | 2 cut(s) | 950, 996 |
| BstSCI | CCNGG | 3 cut(s) | 33, 204, 1537 |
| BstSFI | CTRYAG | 1 cut(s) | 1221 |
| BstSLI | GKGCMC | 5 cut(s) | 296, 1075, 1407, 1466, 1631 |
| BstSNI | TACGTA | 1 cut(s) | 1156 |
| BstUI | CGCG | 6 cut(s) | 25, 95, 231, 284, 829, 880 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BstV2I | GAAGAC | 2 cut(s) | 137, 1746 |
| BstX2I | RGATCY | 2 cut(s) | 1271, 1501 |
| BstYI | RGATCY | 2 cut(s) | 1271, 1501 |
| BsuI | GTATCC | 1 cut(s) | 1168 |
| BsuRI | GGCC | 4 cut(s) | 234, 257, 569, 1345 |
| BtgI | CCRYGG | 2 cut(s) | 229, 249 |
| BtgZI | GCGATG | 1 cut(s) | 55 |
| BtsCI | GGATG | 3 cut(s) | 486, 1433, 1588 |
| BtsIMutI | CAGTG | 5 cut(s) | 1164, 1338, 1393, 1670, 1876 |
| BtuMI | TCGCGA | 1 cut(s) | 284 |
| BveI | ACCTGC | 1 cut(s) | 1045 |
| Cac8I | GCNNGC | 3 cut(s) | 395, 474, 1631 |
| CfoI | GCGC | 5 cut(s) | 97, 278, 502, 829, 880 |
| Cfr13I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1091, 1343, 1529 |
| Cfr42I | CCGCGG | 1 cut(s) | 232 |
| CseI | GACGC | 1 cut(s) | 182 |
| Csp6I | GTAC | 7 cut(s) | 271, 328, 690, 1214, 1311, 1560, 1730 |
| CviAII | CATG | 6 cut(s) | 259, 704, 1088, 1292, 1733, 1861 |
| CviQI | GTAC | 7 cut(s) | 271, 328, 690, 1214, 1311, 1560, 1730 |
| DdeI | CTNAG | 9 cut(s) | 7, 503, 693, 1025, 1076, 1275, 1701, 1795, 1830 |
| DpnI | GATC | 6 cut(s) | 194, 345, 1273, 1350, 1488, 1503 |
| DpnII | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| DraI | TTTAAA | 2 cut(s) | 1650, 1842 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 11, 179 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 11, 179 |
| EaeI | YGGCCR | 1 cut(s) | 232 |
| EciI | GGCGGA | 1 cut(s) | 422 |
| Eco105I | TACGTA | 1 cut(s) | 1156 |
| Eco130I | CCWWGG | 1 cut(s) | 235 |
| Eco31I | GGTCTC | 2 cut(s) | 59, 945 |
| Eco47I | GGWCC | 5 cut(s) | 31, 226, 548, 1091, 1529 |
| Eco57I | CTGAAG | 3 cut(s) | 162, 1188, 1626 |
| Eco91I | GGTNACC | 2 cut(s) | 950, 996 |
| EcoO109I | RGGNCCY | 1 cut(s) | 31 |
| EcoO65I | GGTNACC | 2 cut(s) | 950, 996 |
| EcoRII | CCWGG | 3 cut(s) | 33, 204, 1537 |
| EcoT14I | CCWWGG | 1 cut(s) | 235 |
| EcoT22I | ATGCAT | 3 cut(s) | 1135, 1435, 1804 |
| ErhI | CCWWGG | 1 cut(s) | 235 |
| FaeI | CATG | 6 cut(s) | 262, 707, 1091, 1295, 1736, 1864 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1176, 1208, 1778, 1810 |
| FatI | CATG | 6 cut(s) | 258, 703, 1087, 1291, 1732, 1860 |
| FauI | CCCGC | 1 cut(s) | 969 |
| FauNDI | CATATG | 1 cut(s) | 582 |
| FbaI | TGATCA | 1 cut(s) | 1348 |
| FblI | GTMKAC | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 881 |
| FokI | GGATG | 3 cut(s) | 493, 1420, 1595 |
| Fsp4HI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 881 |
| FspBI | CTAG | 4 cut(s) | 473, 489, 1592, 1885 |
| GlaI | GCGC | 5 cut(s) | 96, 277, 501, 828, 879 |
| GluI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 881 |
| GsuI | CTGGAG | 4 cut(s) | 56, 227, 837, 1369 |
| HaeIII | GGCC | 4 cut(s) | 234, 257, 569, 1345 |
| HapII | CCGG | 2 cut(s) | 668, 1259 |
| HgaI | GACGC | 1 cut(s) | 182 |
| HhaI | GCGC | 5 cut(s) | 97, 278, 502, 829, 880 |
| Hin1I | GRCGYC | 1 cut(s) | 12 |
| Hin1II | CATG | 6 cut(s) | 262, 707, 1091, 1295, 1736, 1864 |
| Hin6I | GCGC | 5 cut(s) | 95, 276, 500, 827, 878 |
| HinP1I | GCGC | 5 cut(s) | 95, 276, 500, 827, 878 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 2 cut(s) | 531, 1787 |
| HinfI | GANTC | 4 cut(s) | 81, 155, 209, 1586 |
| HpaII | CCGG | 2 cut(s) | 668, 1259 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 294, 1012, 1730 |
| Hpy188III | TCNNGA | 5 cut(s) | 103, 224, 283, 816, 1024 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 294, 1012, 1730 |
| Hpy99I | CGWCG | 6 cut(s) | 17, 95, 173, 176, 284, 289 |
| HpyAV | CCTTC | 4 cut(s) | 825, 983, 1447, 1601 |
| HpyCH4III | ACNGT | 7 cut(s) | 136, 298, 919, 968, 1016, 1496, 1880 |
| HpyCH4IV | ACGT | 4 cut(s) | 12, 1155, 1552, 1745 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 263, 275 |
| HpyF3I | CTNAG | 9 cut(s) | 7, 503, 693, 1025, 1076, 1275, 1701, 1795, 1830 |
| HpySE526I | ACGT | 4 cut(s) | 12, 1155, 1552, 1745 |
| Hsp92I | GRCGYC | 1 cut(s) | 12 |
| Hsp92II | CATG | 6 cut(s) | 262, 707, 1091, 1295, 1736, 1864 |
| HspAI | GCGC | 5 cut(s) | 95, 276, 500, 827, 878 |
| Ksp22I | TGATCA | 1 cut(s) | 1348 |
| KspI | CCGCGG | 1 cut(s) | 232 |
| Kzo9I | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| LmnI | GCTCC | 4 cut(s) | 105, 390, 842, 1417 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| LweI | GCATC | 6 cut(s) | 487, 1120, 1142, 1420, 1442, 1789 |
| MaeI | CTAG | 4 cut(s) | 473, 489, 1592, 1885 |
| MaeII | ACGT | 4 cut(s) | 12, 1155, 1552, 1745 |
| MaeIII | GTNAC | 9 cut(s) | 50, 181, 913, 950, 996, 1225, 1285, 1599, 1880 |
| MalI | GATC | 6 cut(s) | 194, 345, 1273, 1350, 1488, 1503 |
| MbiI | CCGCTC | 1 cut(s) | 100 |
| MboI | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| MboII | GAAGA | 6 cut(s) | 139, 142, 1316, 1748, 1751, 1832 |
| MflI | RGATCY | 2 cut(s) | 1271, 1501 |
| MhlI | GDGCHC | 5 cut(s) | 296, 1075, 1407, 1466, 1631 |
| MluCI | AATT | 9 cut(s) | 302, 562, 713, 720, 1056, 1150, 1246, 1263, 1780 |
| MlyI | GAGTC | 4 cut(s) | 75, 164, 218, 1580 |
| MmeI | TCCRAC | 3 cut(s) | 625, 1403, 1461 |
| Mph1103I | ATGCAT | 3 cut(s) | 1135, 1435, 1804 |
| MseI | TTAA | 8 cut(s) | 561, 588, 1005, 1098, 1194, 1649, 1748, 1841 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1086, 1296 |
| MspA1I | CMGCKG | 1 cut(s) | 231 |
| MspCI | CTTAAG | 2 cut(s) | 1097, 1193 |
| MspI | CCGG | 2 cut(s) | 668, 1259 |
| MspR9I | CCNGG | 3 cut(s) | 35, 206, 1539 |
| Mva1269I | GAATGC | 1 cut(s) | 1663 |
| MvaI | CCWGG | 3 cut(s) | 35, 206, 1539 |
| MvnI | CGCG | 6 cut(s) | 25, 95, 231, 284, 829, 880 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 263, 275 |
| NdeI | CATATG | 1 cut(s) | 582 |
| NdeII | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 6 cut(s) | 262, 707, 1091, 1295, 1736, 1864 |
| NlaIV | GGNNCC | 2 cut(s) | 32, 741 |
| NmuCI | GTSAC | 8 cut(s) | 50, 181, 913, 996, 1225, 1285, 1599, 1880 |
| NruI | TCGCGA | 1 cut(s) | 284 |
| NsiI | ATGCAT | 3 cut(s) | 1135, 1435, 1804 |
| NspI | RCATGY | 1 cut(s) | 1864 |
| NspV | TTCGAA | 1 cut(s) | 1477 |
| PciI | ACATGT | 1 cut(s) | 1860 |
| PctI | GAATGC | 1 cut(s) | 1663 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 961 |
| PfoI | TCCNGGA | 1 cut(s) | 33 |
| PkrI | GCNGC | 5 cut(s) | 99, 233, 268, 442, 882 |
| PleI | GAGTC | 4 cut(s) | 75, 163, 217, 1580 |
| PpsI | GAGTC | 4 cut(s) | 75, 163, 217, 1580 |
| Ppu21I | YACGTR | 1 cut(s) | 1156 |
| PpuMI | RGGWCCY | 1 cut(s) | 31 |
| PscI | ACATGT | 1 cut(s) | 1860 |
| PsiI | TTATAA | 1 cut(s) | 1245 |
| Psp5II | RGGWCCY | 1 cut(s) | 31 |
| Psp6I | CCWGG | 3 cut(s) | 33, 204, 1537 |
| PspEI | GGTNACC | 2 cut(s) | 950, 996 |
| PspGI | CCWGG | 3 cut(s) | 33, 204, 1537 |
| PspN4I | GGNNCC | 2 cut(s) | 32, 741 |
| PspPI | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1091, 1343, 1529 |
| PspPPI | RGGWCCY | 1 cut(s) | 31 |
| PsuI | RGATCY | 2 cut(s) | 1271, 1501 |
| RruI | TCGCGA | 1 cut(s) | 284 |
| RsaI | GTAC | 7 cut(s) | 272, 329, 691, 1215, 1312, 1561, 1731 |
| RsaNI | GTAC | 7 cut(s) | 271, 328, 690, 1214, 1311, 1560, 1730 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1086, 1296 |
| SacII | CCGCGG | 1 cut(s) | 232 |
| SalI | GTCGAC | 1 cut(s) | 14 |
| SaqAI | TTAA | 8 cut(s) | 561, 588, 1005, 1098, 1194, 1649, 1748, 1841 |
| SatI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 881 |
| Sau3AI | GATC | 6 cut(s) | 192, 343, 1271, 1348, 1486, 1501 |
| Sau96I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1091, 1343, 1529 |
| ScaI | AGTACT | 1 cut(s) | 1561 |
| SchI | GAGTC | 4 cut(s) | 75, 164, 218, 1580 |
| ScrFI | CCNGG | 3 cut(s) | 35, 206, 1539 |
| SduI | GDGCHC | 5 cut(s) | 296, 1075, 1407, 1466, 1631 |
| SfaNI | GCATC | 6 cut(s) | 487, 1120, 1142, 1420, 1442, 1789 |
| SfcI | CTRYAG | 1 cut(s) | 1221 |
| Sfr303I | CCGCGG | 1 cut(s) | 232 |
| SfuI | TTCGAA | 1 cut(s) | 1477 |
| SgrBI | CCGCGG | 1 cut(s) | 232 |
| SinI | GGWCC | 5 cut(s) | 31, 226, 548, 1091, 1529 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1086, 1296 |
| SmlI | CTYRAG | 2 cut(s) | 1097, 1193 |
| SmoI | CTYRAG | 2 cut(s) | 1097, 1193 |
| SnaBI | TACGTA | 1 cut(s) | 1156 |
| Sse9I | AATT | 9 cut(s) | 302, 562, 713, 720, 1056, 1150, 1246, 1263, 1780 |
| SspMI | CTAG | 4 cut(s) | 473, 489, 1592, 1885 |
| StyD4I | CCNGG | 3 cut(s) | 33, 204, 1537 |
| StyI | CCWWGG | 1 cut(s) | 235 |
| TaaI | ACNGT | 7 cut(s) | 136, 298, 919, 968, 1016, 1496, 1880 |
| TaiI | ACGT | 4 cut(s) | 15, 1158, 1555, 1748 |
| TaqI | TCGA | 7 cut(s) | 15, 153, 198, 216, 1477, 1534, 1836 |
| TaqII | GACCGA | 1 cut(s) | 689 |
| TasI | AATT | 9 cut(s) | 302, 562, 713, 720, 1056, 1150, 1246, 1263, 1780 |
| TatI | WGTACW | 4 cut(s) | 327, 1213, 1559, 1729 |
| TauI | GCSGC | 4 cut(s) | 100, 234, 269, 883 |
| Tru1I | TTAA | 8 cut(s) | 561, 588, 1005, 1098, 1194, 1649, 1748, 1841 |
| Tru9I | TTAA | 8 cut(s) | 561, 588, 1005, 1098, 1194, 1649, 1748, 1841 |
| TscAI | CASTG | 5 cut(s) | 1171, 1345, 1393, 1677, 1883 |
| TseFI | GTSAC | 8 cut(s) | 50, 181, 913, 996, 1225, 1285, 1599, 1880 |
| TseI | GCWGC | 1 cut(s) | 440 |
| Tsp45I | GTSAC | 8 cut(s) | 50, 181, 913, 996, 1225, 1285, 1599, 1880 |
| TspDTI | ATGAA | 5 cut(s) | 497, 569, 1128, 1625, 1749 |
| TspGWI | ACGGA | 6 cut(s) | 38, 266, 302, 337, 1435, 1669 |
| TspRI | CASTG | 5 cut(s) | 1171, 1345, 1393, 1677, 1883 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 961 |
| Vha464I | CTTAAG | 2 cut(s) | 1097, 1193 |
| VneI | GTGCAC | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 5 cut(s) | 31, 226, 548, 1091, 1529 |
| XapI | RAATTY | 2 cut(s) | 302, 1056 |
| XceI | RCATGY | 1 cut(s) | 1864 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 220 |
| XmiI | GTMKAC | 1 cut(s) | 15 |
| XspI | CTAG | 4 cut(s) | 473, 489, 1592, 1885 |
| ZraI | GACGTC | 1 cut(s) | 13 |
| ZrmI | AGTACT | 1 cut(s) | 1561 |
| Zsp2I | ATGCAT | 3 cut(s) | 1135, 1435, 1804 |