Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273167.1

Orthogroup ID

OG0000851

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 793

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 538 bp

atggatggtgttttgcgggtagtgggggaagggaggtcactgcttaatgtgaactgtggtgtcctcagttttgaacctgcaagaaaagagaaagaaattccgaggaacagggcacttaggcacaagcatggaccacttaagattagagatgctgaatatgtcggcacggatgcatcagatggcatacataattacgtatccagcactgaagttagaaaagtgcaagaacaacttaagtctggtgttatggctgtacaatctgtagtgacagacgcgctaccttataatttgcgcgtgccggaaattgtaagatctgaggtggaagtcaatcatgtaaatggagaagatggtacagaaaatccatctgttgaaaagaccactgggcctgatcattctaatagtgatactaatggaaatccgacctccagtgatcagaacgatgtgccccaagctcccggacaagaaaatgatgcatccaacctgtccgttgagaagggaaggggcacagagtatgttcgaagtggtgatcccaaccgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO Myb_DNA-binding

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

5.27

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06910 AT1G15720 AT5G58340 AT5G58340
fragaria_vesca	FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_5g00450 FvH4_5g00450 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240
malus_domestica	MD03G1052200.v1.1 MD10G1106900.v1.1 MD11G1054300.v1.1
prunus_persica	Prupe.6G041700_v2.0.a1
pyrus_communis	pycom03g04150 pycom11g04410
rosa_chinensis	RchiOBHm_Chr5g0000441 RchiOBHm_Chr5g0073101 RchiOBHm_Chr7g0218431 RchiOBHm_Chr7g0221531 RchiOBHm_Chr7g0221541
rosa_laevigata	RLG00000002155 RLG00000002374 RLG00000030867 RLG00000036363
rosa_multiflora	Rmu_co8212148.1_g000001 Rmu_co8273167.1_g000001 Rmu_sc0001680.1_g000002 Rmu_sc0003949.1_g000004 Rmu_sc0005592.1_g000024 Rmu_sc0005994.1_g000013 Rmu_sc0029255.1_g000001 Rmu_sc0029256.1_g000001 Rmu_ssc0000385.1_g000016
rosa_roxburghii	Rroxscaffold_1G00008100 Rroxscaffold_1G00008150 Rroxscaffold_1G00075720 Rroxscaffold_3G00240990 Rroxscaffold_5G00361570
rosa_rugosa	Rorug04G0383600.1 Rorug04G0383700 Rorug05G0421100 Rorug07G0177000
rosa_samantha	Rh5AG003600 Rh5AG478100 Rh5BG004800 Rh5BG498800 Rh5CG003900 Rh5CG522000 Rh5DG003700 Rh5DG510900 Rh7AG318400 Rh7BG310300 Rh7CG335200 Rh7CG335300 Rh7DG317400
rosa_wichuraiana	Rw5G000360 Rw5G044400 Rw7G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	85
AccII	CGCG	2 cut(s)	275, 294
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	255, 352
AflII	CTTAAG	2 cut(s)	137, 233
AgsI	TTSAA	2 cut(s)	74, 371
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	277, 294
AspS9I	GGNCC	2 cut(s)	131, 383
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	3 cut(s)	115, 447, 506
BccI	CCATC	3 cut(s)	173, 341, 370
BciVI	GTATCC	1 cut(s)	208
BclI	TGATCA	2 cut(s)	388, 430
BcnI	CCSGG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	2 cut(s)	137, 233
BfuAI	ACCTGC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	131, 383
BmrFI	CCNGG	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	5 cut(s)	139, 160, 182, 460, 482
BmuI	ACTGGG	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	385, 426
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	3 cut(s)	10, 175, 473
BseMII	CTCAG	2 cut(s)	79, 306
BseNI	ACTGG	2 cut(s)	385, 426
BseSI	GKGCMC	3 cut(s)	115, 447, 506
Bsh1236I	CGCG	2 cut(s)	275, 294
BshFI	GGCC	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	299, 456
BsnI	GGCC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	115, 447, 506
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	311, 388, 430, 526
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	78, 307
BspFNI	CGCG	2 cut(s)	275, 294
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	521
BspT104I	TTCGAA	1 cut(s)	517
BspTI	CTTAAG	2 cut(s)	137, 233
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	385, 426
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	4 cut(s)	311, 388, 430, 526
Bst4CI	ACNGT	2 cut(s)	56, 536
BstAFI	CTTAAG	2 cut(s)	137, 233
BstAUI	TGTACA	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	65, 116, 315
BstF5I	GGATG	3 cut(s)	10, 175, 473
BstFNI	CGCG	2 cut(s)	275, 294
BstHHI	GCGC	2 cut(s)	277, 294
BstKTI	GATC	4 cut(s)	314, 391, 433, 529
BstMBI	GATC	4 cut(s)	311, 388, 430, 526
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	3 cut(s)	115, 447, 506
BstSNI	TACGTA	1 cut(s)	196
BstUI	CGCG	2 cut(s)	275, 294
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	10, 175, 473
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	4 cut(s)	38, 204, 378, 433
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	2 cut(s)	277, 294
Cfr13I	GGNCC	2 cut(s)	131, 383
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	254, 351
CviAII	CATG	2 cut(s)	128, 332
CviJI	RGCY	3 cut(s)	251, 385, 452
CviKI_1	RGCY	3 cut(s)	251, 385, 452
CviQI	GTAC	2 cut(s)	254, 351
DdeI	CTNAG	3 cut(s)	65, 116, 315
DpnI	GATC	4 cut(s)	313, 390, 432, 528
DpnII	GATC	4 cut(s)	311, 388, 430, 526
Eco105I	TACGTA	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	228
EcoT22I	ATGCAT	2 cut(s)	175, 475
FaeI	CATG	2 cut(s)	131, 335
FaiI	YATR	8 cut(s)	129, 159, 185, 189, 248, 285, 333, 513
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	2 cut(s)	127, 331
FauI	CCCGC	1 cut(s)	9
FbaI	TGATCA	2 cut(s)	388, 430
FokI	GGATG	3 cut(s)	17, 182, 460
GlaI	GCGC	2 cut(s)	276, 293
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	2 cut(s)	299, 456
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	277, 294
Hin1II	CATG	2 cut(s)	131, 335
Hin6I	GCGC	2 cut(s)	275, 292
HinP1I	GCGC	2 cut(s)	275, 292
HpaII	CCGG	2 cut(s)	299, 456
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	5 cut(s)	102, 178, 316, 420, 435
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	23, 487, 492
HpyCH4III	ACNGT	2 cut(s)	56, 536
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	4 cut(s)	80, 173, 223, 473
HpyF3I	CTNAG	3 cut(s)	65, 116, 315
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	131, 335
HspAI	GCGC	2 cut(s)	275, 292
Ksp22I	TGATCA	2 cut(s)	388, 430
Kzo9I	GATC	4 cut(s)	311, 388, 430, 526
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	5 cut(s)	139, 160, 182, 460, 482
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	36, 265
MalI	GATC	4 cut(s)	313, 390, 432, 528
MboI	GATC	4 cut(s)	311, 388, 430, 526
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	115, 447, 506
MluCI	AATT	4 cut(s)	96, 190, 286, 303
MmeI	TCCRAC	2 cut(s)	443, 501
MnlI	CCTC	5 cut(s)	27, 74, 96, 310, 433
Mph1103I	ATGCAT	2 cut(s)	175, 475
MseI	TTAA	3 cut(s)	45, 138, 234
MslI	CAYNNNNRTG	2 cut(s)	126, 336
MspCI	CTTAAG	2 cut(s)	137, 233
MspI	CCGG	2 cut(s)	299, 456
MspR9I	CCNGG	1 cut(s)	456
MvnI	CGCG	2 cut(s)	275, 294
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	4 cut(s)	311, 388, 430, 526
NlaIII	CATG	2 cut(s)	131, 335
NmuCI	GTSAC	2 cut(s)	36, 265
NsiI	ATGCAT	2 cut(s)	175, 475
NspV	TTCGAA	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	131, 383
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	255, 352
RsaNI	GTAC	2 cut(s)	254, 351
RseI	CAYNNNNRTG	2 cut(s)	126, 336
SaqAI	TTAA	3 cut(s)	45, 138, 234
Sau3AI	GATC	4 cut(s)	311, 388, 430, 526
Sau96I	GGNCC	2 cut(s)	131, 383
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	3 cut(s)	115, 447, 506
SetI	ASST	8 cut(s)	38, 79, 198, 283, 321, 425, 454, 483
SfaNI	GCATC	5 cut(s)	139, 160, 182, 460, 482
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	126, 336
SmlI	CTYRAG	2 cut(s)	137, 233
SmoI	CTYRAG	2 cut(s)	137, 233
SnaBI	TACGTA	1 cut(s)	196
Sse9I	AATT	4 cut(s)	96, 190, 286, 303
SsiI	CCGC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	56, 536
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	517
TasI	AATT	4 cut(s)	96, 190, 286, 303
TatI	WGTACW	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	45, 138, 234
Tru9I	TTAA	3 cut(s)	45, 138, 234
TscAI	CASTG	4 cut(s)	45, 211, 385, 433
TseFI	GTSAC	2 cut(s)	36, 265
Tsp45I	GTSAC	2 cut(s)	36, 265
TspGWI	ACGGA	2 cut(s)	182, 475
TspRI	CASTG	4 cut(s)	45, 211, 385, 433
Vha464I	CTTAAG	2 cut(s)	137, 233
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	96
Zsp2I	ATGCAT	2 cut(s)	175, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.