Rmu_sc0029255.1_g000001
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029255.1
OG0000851
Physical Location & Seq
Reverse (-)
1 .. 1098
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029255.1_g000001.1.cds

Sequence Viewer

Length: 1091 bp
atggacttagacgtcgacatttcgcggtgggtcctggagtttctcctccgtgaccgccacaacgagaccatcgccaagcgactccttgccgtcgcgccgctcccgaaccgccacgactggcggttgaagaagaccgtcctcctccgaacaatcgagtccgcaatctacgacgacgcttcagtcaccgaagcgatcctcgaagccctggagtccatcgaggctctggaccgcggccaagggtttcagaccacggaggccatgagggcggcgtactgcgccgtcgcgacggagtgcacggtcaagttcttggtttgcttcggacggaagtacattgaggctgtggatcggatttggagaggtagggttagggttttggaggagagtgaggggagcgagctggtttcggcggagttgaaagagagaagatatgaggtggaggctgcgacatgggataggaatgtgtcgaaaaagctagcgaggatgaatactagaaatgatgcgctgagattggttggggagtatgtggaggaagcttgggctgtgattggtcctccttttcttaattgggccgttagatttcatatggttaaggaaagtttaggtgagggtgatggtaatgtaggtgatgggtgtggaaaggaggttggaatggtgaatgggaatgaactggaggtgcaggtagcaaatggggctgatttgggtgatggttccaaatcggaggtcaatggggataatgagggtgatgggtctaaactggaggtgcaaatagagagtgatactaaggttggtcatgggtctgaattggtaatttggactggggtggaggtgccattgacaaaaggggctgatttgggtgttgggaaagagttgaatgggcaaagggaaaatggggctaatgttagtgatgggtctggagaaaaggcgcgaagggtgaatggagctaatgttggtggtgataggtctaattgggaggcgcggggagtggaaaatgatactaatgtgggtgatgtgactgtagctttttccaagtttgggtctctgttgggttaccattctatggatggtgttttgcgggtagtgggggaagggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

363

Amino Acids

39.68

Weight (kDa)

4.88

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 11, 179
AatII GACGTC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 826
AccB7I CCANNNNNTGG 1 cut(s) 1057
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 15
AccII CGCG 6 cut(s) 25, 95, 231, 284, 925, 976
AclWI GGATC 2 cut(s) 187, 351
AcoI YGGCCR 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 272, 329
AfiI CCNNNNNNNGG 2 cut(s) 1032, 1057
AgsI TTSAA 3 cut(s) 127, 415, 871
AjnI CCWGG 2 cut(s) 33, 204
AluBI AGCT 5 cut(s) 397, 472, 533, 941, 1019
AluI AGCT 5 cut(s) 397, 472, 533, 941, 1019
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 59, 1041
Alw44I GTGCAC 1 cut(s) 292
AlwI GGATC 2 cut(s) 187, 351
AoxI GGCC 3 cut(s) 232, 255, 567
ApaLI GTGCAC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 440
ArsI GACNNNNNNTTYG 2 cut(s) 705, 737
AspLEI GCGC 5 cut(s) 97, 278, 502, 925, 976
AspS9I GGNCC 4 cut(s) 31, 226, 548, 567
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 3 cut(s) 31, 226, 548
BaeGI GKGCMC 1 cut(s) 296
BaeI ACNNNNGTAYC 4 cut(s) 768, 801, 984, 1017
BanI GGYRCC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 427
BccI CCATC 8 cut(s) 77, 221, 605, 620, 698, 737, 899, 1055
BceAI ACGGC 3 cut(s) 74, 263, 554
BciT130I CCWGG 2 cut(s) 35, 206
BcoDI GTCTC 2 cut(s) 59, 1041
BfaI CTAG 2 cut(s) 473, 489
BfmI CTRYAG 1 cut(s) 1014
BfuAI ACCTGC 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 4 cut(s) 98, 232, 267, 441
BlsI GCNGC 4 cut(s) 99, 233, 268, 442
Bme1390I CCNGG 2 cut(s) 35, 206
Bme18I GGWCC 3 cut(s) 31, 226, 548
BmgT120I GGNCC 4 cut(s) 31, 226, 548, 567
BmiI GGNNCC 3 cut(s) 32, 709, 828
BmrFI CCNGG 2 cut(s) 35, 206
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 1 cut(s) 487
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 5 cut(s) 56, 227, 689, 776, 933
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 2 cut(s) 59, 1041
BsaJI CCNNGG 4 cut(s) 204, 229, 235, 249
BsaXI ACNNNNNCTCC 2 cut(s) 930, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 1032, 1057
Bse1I ACTGG 4 cut(s) 122, 672, 759, 820
BseBI CCWGG 2 cut(s) 35, 206
BseDI CCNNGG 4 cut(s) 204, 229, 235, 249
BseGI GGATG 2 cut(s) 486, 1066
BseLI CCNNNNNNNGG 2 cut(s) 1032, 1057
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 4 cut(s) 122, 672, 759, 820
BseRI GAGGAG 3 cut(s) 35, 131, 392
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 1 cut(s) 427
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 6 cut(s) 25, 95, 231, 284, 925, 976
BshFI GGCC 3 cut(s) 234, 257, 569
BshNI GGYRCC 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 1032, 1057
BsmAI GTCTC 2 cut(s) 59, 1041
BsnI GGCC 3 cut(s) 234, 257, 569
Bso31I GGTCTC 2 cut(s) 59, 1041
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 192, 343
Bsp68I TCGCGA 1 cut(s) 284
BspANI GGCC 3 cut(s) 234, 257, 569
BspCNI CTCAG 1 cut(s) 495
BspFNI CGCG 6 cut(s) 25, 95, 231, 284, 925, 976
BspLI GGNNCC 3 cut(s) 32, 709, 828
BspMI ACCTGC 1 cut(s) 667
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 2 cut(s) 187, 351
BspT107I GGYRCC 1 cut(s) 826
BspTNI GGTCTC 2 cut(s) 59, 1041
BsrBI CCGCTC 1 cut(s) 100
BsrI ACTGG 4 cut(s) 122, 672, 759, 820
BssECI CCNNGG 4 cut(s) 204, 229, 235, 249
BssMI GATC 2 cut(s) 192, 343
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 2 cut(s) 35, 206
Bst4CI ACNGT 3 cut(s) 136, 298, 1015
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 395, 474
BstDEI CTNAG 3 cut(s) 7, 503, 780
BstDSI CCRYGG 2 cut(s) 229, 249
BstEII GGTNACC 1 cut(s) 1046
BstF5I GGATG 2 cut(s) 486, 1066
BstFNI CGCG 6 cut(s) 25, 95, 231, 284, 925, 976
BstHHI GCGC 5 cut(s) 97, 278, 502, 925, 976
BstKTI GATC 2 cut(s) 195, 346
BstMAI GTCTC 2 cut(s) 59, 1041
BstMBI GATC 2 cut(s) 192, 343
BstMWI GCNNNNNNNGC 3 cut(s) 263, 275, 689
BstNI CCWGG 2 cut(s) 35, 206
BstPI GGTNACC 1 cut(s) 1046
BstSCI CCNGG 2 cut(s) 33, 204
BstSFI CTRYAG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 6 cut(s) 25, 95, 231, 284, 925, 976
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 234, 257, 569
BtgI CCRYGG 2 cut(s) 229, 249
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 486, 1066
BtuMI TCGCGA 1 cut(s) 284
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 2 cut(s) 395, 474
CfoI GCGC 5 cut(s) 97, 278, 502, 925, 976
Cfr13I GGNCC 4 cut(s) 31, 226, 548, 567
Cfr42I CCGCGG 1 cut(s) 232
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 271, 328
CviAII CATG 3 cut(s) 259, 447, 791
CviQI GTAC 2 cut(s) 271, 328
DdeI CTNAG 3 cut(s) 7, 503, 780
DpnI GATC 2 cut(s) 194, 345
DpnII GATC 2 cut(s) 192, 343
DrdI GACNNNNNNGTC 2 cut(s) 11, 179
DseDI GACNNNNNNGTC 2 cut(s) 11, 179
EaeI YGGCCR 1 cut(s) 232
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 235
Eco31I GGTCTC 2 cut(s) 59, 1041
Eco47I GGWCC 3 cut(s) 31, 226, 548
Eco57I CTGAAG 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 1046
EcoO109I RGGNCCY 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 1046
EcoRII CCWGG 2 cut(s) 33, 204
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 3 cut(s) 262, 450, 794
FaiI YATR 8 cut(s) 260, 429, 448, 522, 582, 584, 792, 1058
FatI CATG 3 cut(s) 258, 446, 790
FauI CCCGC 2 cut(s) 969, 1065
FauNDI CATATG 1 cut(s) 582
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 98, 232, 267, 441
FokI GGATG 2 cut(s) 493, 1073
Fsp4HI GCNGC 4 cut(s) 98, 232, 267, 441
FspBI CTAG 2 cut(s) 473, 489
GlaI GCGC 5 cut(s) 96, 277, 501, 924, 975
GluI GCNGC 4 cut(s) 98, 232, 267, 441
GsuI CTGGAG 5 cut(s) 56, 227, 689, 776, 933
HaeIII GGCC 3 cut(s) 234, 257, 569
HgaI GACGC 1 cut(s) 182
HhaI GCGC 5 cut(s) 97, 278, 502, 925, 976
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 3 cut(s) 262, 450, 794
Hin6I GCGC 5 cut(s) 95, 276, 500, 923, 974
HinP1I GCGC 5 cut(s) 95, 276, 500, 923, 974
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 3 cut(s) 81, 155, 209
Hpy166II GTNNAC 2 cut(s) 16, 294
Hpy188I TCNGA 6 cut(s) 146, 246, 320, 348, 718, 799
Hpy188III TCNNGA 4 cut(s) 103, 224, 283, 912
Hpy8I GTNNAC 2 cut(s) 16, 294
Hpy99I CGWCG 6 cut(s) 17, 95, 173, 176, 284, 289
HpyAV CCTTC 2 cut(s) 921, 1079
HpyCH4III ACNGT 3 cut(s) 136, 298, 1015
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 294, 676, 763
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 275, 689
HpyF3I CTNAG 3 cut(s) 7, 503, 780
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 3 cut(s) 262, 450, 794
HspAI GCGC 5 cut(s) 95, 276, 500, 923, 974
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 192, 343
LmnI GCTCC 3 cut(s) 105, 390, 938
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 473, 489
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 4 cut(s) 50, 181, 1009, 1046
MalI GATC 2 cut(s) 194, 345
MbiI CCGCTC 1 cut(s) 100
MboI GATC 2 cut(s) 192, 343
MboII GAAGA 3 cut(s) 139, 142, 435
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 4 cut(s) 562, 800, 807, 964
MlyI GAGTC 3 cut(s) 75, 164, 218
MmeI TCCRAC 1 cut(s) 625
MseI TTAA 2 cut(s) 561, 588
MspA1I CMGCKG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 35, 206
MvaI CCWGG 2 cut(s) 35, 206
MvnI CGCG 6 cut(s) 25, 95, 231, 284, 925, 976
MwoI GCNNNNNNNGC 3 cut(s) 263, 275, 689
NdeI CATATG 1 cut(s) 582
NdeII GATC 2 cut(s) 192, 343
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 3 cut(s) 262, 450, 794
NlaIV GGNNCC 3 cut(s) 32, 709, 828
NmuCI GTSAC 3 cut(s) 50, 181, 1009
NruI TCGCGA 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 1057
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 4 cut(s) 99, 233, 268, 442
PleI GAGTC 3 cut(s) 75, 163, 217
PpsI GAGTC 3 cut(s) 75, 163, 217
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 33, 204
PspEI GGTNACC 1 cut(s) 1046
PspGI CCWGG 2 cut(s) 33, 204
PspN4I GGNNCC 3 cut(s) 32, 709, 828
PspPI GGNCC 4 cut(s) 31, 226, 548, 567
PspPPI RGGWCCY 1 cut(s) 31
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 2 cut(s) 272, 329
RsaNI GTAC 2 cut(s) 271, 328
SacII CCGCGG 1 cut(s) 232
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 561, 588
SatI GCNGC 4 cut(s) 98, 232, 267, 441
Sau3AI GATC 2 cut(s) 192, 343
Sau96I GGNCC 4 cut(s) 31, 226, 548, 567
SchI GAGTC 3 cut(s) 75, 164, 218
ScrFI CCNGG 2 cut(s) 35, 206
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 1014
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 3 cut(s) 31, 226, 548
Sse9I AATT 4 cut(s) 562, 800, 807, 964
SspMI CTAG 2 cut(s) 473, 489
StyD4I CCNGG 2 cut(s) 33, 204
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 3 cut(s) 136, 298, 1015
TaiI ACGT 1 cut(s) 15
TaqI TCGA 5 cut(s) 15, 153, 198, 216, 464
TasI AATT 4 cut(s) 562, 800, 807, 964
TatI WGTACW 1 cut(s) 327
TauI GCSGC 3 cut(s) 100, 234, 269
Tru1I TTAA 2 cut(s) 561, 588
Tru9I TTAA 2 cut(s) 561, 588
TseFI GTSAC 3 cut(s) 50, 181, 1009
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 3 cut(s) 50, 181, 1009
TspDTI ATGAA 3 cut(s) 497, 569, 678
TspGWI ACGGA 4 cut(s) 38, 266, 302, 337
Van91I CCANNNNNTGG 1 cut(s) 1057
VneI GTGCAC 1 cut(s) 292
VpaK11BI GGWCC 3 cut(s) 31, 226, 548
XcmI CCANNNNNNNNNTGG 2 cut(s) 220, 1058
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 473, 489
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.