Rroxscaffold_1G00008150
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000851
Physical Location & Seq
Reverse (-)
10274058 .. 10281443
7386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008150.1

Sequence Viewer

Length: 948 bp
ATGACGGCTACACCTGCTCTGTTTCGACAGACCCTTCCACCCCCTCATCGCAATGATATTAGTGATGTTAGTGATAGGTCCGAATTGGAGGCACAAAGGGTGAATGGGGCTGTTGTGGGGGCGGGGAGATCACAACGTAATGGACATCGTGGTGTCCTCAGCTTAGAACCTGCAACTAAAGAAAAAGAAACTCCAAGGAGCAGGGCACTTAGACACAGGCATGGACCGGTTAAGATTAGAGATGCTGAAGATGTAGGTACGGAATCATCAGCTGGCATATATAATTCTGGCATATATAATTCTGTGTCTAGTGCTGAGGTTAGAAAACTGCAAGAAGAACTTAAGTCCAGTGTTCTTGCTCTACAAGCTGTAGTGACAGACCCACTTCCCTATGCTTTGCATGTATTGGAAATTGTAAGATCTGAGTTGGGAATTGGAGAAAATGGAGGTGCAGCAATTCCATCTGTTGAAAAGAATTCTGAGCCTGATCAATCTAATAATGATAATCATGGAAACCAGATCAGTCATCAGAATGATGTTCCCCAACCTAGTGGCATAGAAAATGATGGACCAAATCTGTCTGTCGACAAGGGTAAGGGCACAGGGTATGTTCGAACCGGTGATGTCAATCCTGGAAATCCGTGTTGCAGTTATCAGAATAATGTTTCCCAAGCTGGCTTGATGGAACACAATAGTACTGCACATACTTATGAGTGGGGTGACTCGCTAGGTATGTCACCTGAACAAACAAACAGTAAGGGAAGGCTTCACCTACCTAGTCCAAAAAGGAATGCTGTTTCTCCACTAAAGAAGTATGAGGATAAAAGATTTTCTAAGAGGAGAAAAGTTAAGAGATGGAGCTTACATGAAGAAGATACGTCAAGGACTGGTGTGCAGAAGGAGACCAAAAGATGGATGATTTCATTCCAGTGCCAAGCATTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

315

Amino Acids

34.63

Weight (kDa)

8.35

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 2 cut(s) 22, 178
AccB7I CCANNNNNTGG 1 cut(s) 912
AccI GTMKAC 1 cut(s) 585
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 259, 697
AfiI CCNNNNNNNGG 1 cut(s) 912
AflII CTTAAG 1 cut(s) 341
AgeI ACCGGT 2 cut(s) 226, 617
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 5 cut(s) 162, 272, 368, 674, 861
AluI AGCT 5 cut(s) 162, 272, 368, 674, 861
Alw26I GTCTC 1 cut(s) 896
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 475
AsiGI ACCGGT 2 cut(s) 226, 617
AspS9I GGNCC 3 cut(s) 78, 224, 569
AsuHPI GGTGA 5 cut(s) 112, 632, 729, 731, 761
AsuII TTCGAA 1 cut(s) 613
AvaII GGWCC 3 cut(s) 78, 224, 569
BaeGI GKGCMC 2 cut(s) 208, 602
BbvCI CCTCAGC 2 cut(s) 158, 315
BbvI GCAGC 1 cut(s) 464
BccI CCATC 5 cut(s) 469, 560, 676, 849, 906
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 896
BfaI CTAG 4 cut(s) 309, 549, 728, 777
BfmI CTRYAG 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 341
BfuAI ACCTGC 2 cut(s) 22, 178
BglII AGATCT 1 cut(s) 419
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 1 cut(s) 633
Bme18I GGWCC 3 cut(s) 78, 224, 569
BmgT120I GGNCC 3 cut(s) 78, 224, 569
BmrFI CCNGG 1 cut(s) 633
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 2 cut(s) 158, 315
Bpu14I TTCGAA 1 cut(s) 613
BsaBI GATNNNNATC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 2 cut(s) 226, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 912
Bse118I RCCGGY 2 cut(s) 226, 617
Bse1I ACTGG 3 cut(s) 348, 892, 928
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 921
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 4 cut(s) 172, 306, 414, 471
BseNI ACTGG 3 cut(s) 348, 892, 928
BseRI GAGGAG 1 cut(s) 853
BseSI GKGCMC 2 cut(s) 208, 602
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 3 cut(s) 471, 684, 914
BshTI ACCGGT 2 cut(s) 226, 617
BsiSI CCGG 2 cut(s) 227, 618
BslI CCNNNNNNNGG 1 cut(s) 912
BsmAI GTCTC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 796
Bso31I GGTCTC 1 cut(s) 896
Bsp119I TTCGAA 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 208, 602
Bsp143I GATC 4 cut(s) 128, 419, 487, 519
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 4 cut(s) 171, 307, 415, 472
BspMI ACCTGC 2 cut(s) 22, 178
BspT104I TTCGAA 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 896
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 2 cut(s) 226, 617
BsrI ACTGG 3 cut(s) 348, 892, 928
BssAI RCCGGY 2 cut(s) 226, 617
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 4 cut(s) 128, 419, 487, 519
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 755
BstAFI CTTAAG 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 274, 676
BstDEI CTNAG 7 cut(s) 158, 163, 209, 315, 423, 480, 834
BstF5I GGATG 1 cut(s) 921
BstKTI GATC 4 cut(s) 131, 422, 490, 522
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 4 cut(s) 128, 419, 487, 519
BstMWI GCNNNNNNNGC 2 cut(s) 14, 365
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 631
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 2 cut(s) 208, 602
BstV1I GCAGC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 1 cut(s) 419
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 921
BtsIMutI CAGTG 2 cut(s) 355, 935
BveI ACCTGC 2 cut(s) 22, 178
Cac8I GCNNGC 2 cut(s) 274, 676
Cfr10I RCCGGY 2 cut(s) 226, 617
Cfr13I GGNCC 3 cut(s) 78, 224, 569
Csp6I GTAC 2 cut(s) 258, 696
CspAI ACCGGT 2 cut(s) 226, 617
CviAII CATG 4 cut(s) 221, 401, 509, 866
CviQI GTAC 2 cut(s) 258, 696
DdeI CTNAG 7 cut(s) 158, 163, 209, 315, 423, 480, 834
DpnI GATC 4 cut(s) 130, 421, 489, 521
DpnII GATC 4 cut(s) 128, 419, 487, 519
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 896
Eco47I GGWCC 3 cut(s) 78, 224, 569
Eco57I CTGAAG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 224, 404, 512, 869
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 4 cut(s) 220, 400, 508, 865
FauI CCCGC 1 cut(s) 115
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 1 cut(s) 928
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 4 cut(s) 309, 549, 728, 777
GluI GCNGC 1 cut(s) 453
HapII CCGG 2 cut(s) 227, 618
Hin1II CATG 4 cut(s) 224, 404, 512, 869
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 2 cut(s) 263, 722
HpaII CCGG 2 cut(s) 227, 618
HphI GGTGA 5 cut(s) 112, 632, 729, 731, 761
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 5 cut(s) 82, 424, 481, 531, 657
Hpy8I GTNNAC 1 cut(s) 586
HpyAV CCTTC 3 cut(s) 44, 756, 892
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4IV ACGT 2 cut(s) 136, 878
HpyCH4V TGCA 7 cut(s) 173, 331, 400, 452, 648, 701, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 365
HpyF3I CTNAG 7 cut(s) 158, 163, 209, 315, 423, 480, 834
HpySE526I ACGT 2 cut(s) 136, 878
Hsp92II CATG 4 cut(s) 224, 404, 512, 869
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 4 cut(s) 128, 419, 487, 519
LmnI GCTCC 2 cut(s) 198, 858
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 1 cut(s) 232
MaeI CTAG 4 cut(s) 309, 549, 728, 777
MaeII ACGT 2 cut(s) 136, 878
MaeIII GTNAC 3 cut(s) 373, 719, 735
MalI GATC 4 cut(s) 130, 421, 489, 521
MboI GATC 4 cut(s) 128, 419, 487, 519
MboII GAAGA 4 cut(s) 260, 347, 881, 884
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 2 cut(s) 208, 602
MluCI AATT 7 cut(s) 83, 283, 298, 411, 432, 456, 475
MlyI GAGTC 1 cut(s) 716
MnlI CCTC 7 cut(s) 54, 82, 167, 310, 440, 811, 831
MseI TTAA 3 cut(s) 231, 342, 849
MslI CAYNNNNRTG 6 cut(s) 51, 150, 219, 531, 708, 928
MspA1I CMGCKG 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 2 cut(s) 227, 618
MspR9I CCNGG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 2 cut(s) 14, 365
NdeII GATC 4 cut(s) 128, 419, 487, 519
NlaIII CATG 4 cut(s) 224, 404, 512, 869
NmuCI GTSAC 3 cut(s) 373, 719, 735
NspI RCATGY 1 cut(s) 404
NspV TTCGAA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 22
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 912
PfoI TCCNGGA 1 cut(s) 631
PinAI ACCGGT 2 cut(s) 226, 617
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspPI GGNCC 3 cut(s) 78, 224, 569
PsuI RGATCY 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 259, 697
RsaNI GTAC 2 cut(s) 258, 696
RseI CAYNNNNRTG 6 cut(s) 51, 150, 219, 531, 708, 928
SalI GTCGAC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 231, 342, 849
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 4 cut(s) 128, 419, 487, 519
Sau96I GGNCC 3 cut(s) 78, 224, 569
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 2 cut(s) 208, 602
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 3 cut(s) 78, 224, 569
SmiMI CAYNNNNRTG 6 cut(s) 51, 150, 219, 531, 708, 928
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 7 cut(s) 83, 283, 298, 411, 432, 456, 475
SsiI CCGC 1 cut(s) 122
SspMI CTAG 4 cut(s) 309, 549, 728, 777
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 755
TaiI ACGT 2 cut(s) 139, 881
TaqI TCGA 3 cut(s) 25, 585, 613
TasI AATT 7 cut(s) 83, 283, 298, 411, 432, 456, 475
TatI WGTACW 1 cut(s) 695
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 231, 342, 849
Tru9I TTAA 3 cut(s) 231, 342, 849
TscAI CASTG 2 cut(s) 355, 935
TseFI GTSAC 3 cut(s) 373, 719, 735
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 3 cut(s) 373, 719, 735
TspDTI ATGAA 2 cut(s) 882, 912
TspGWI ACGGA 2 cut(s) 275, 630
TspRI CASTG 2 cut(s) 355, 935
Van91I CCANNNNNTGG 1 cut(s) 912
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 3 cut(s) 78, 224, 569
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 4 cut(s) 309, 549, 728, 777
ZrmI AGTACT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.