Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8212148.1

Orthogroup ID

OG0000851

Physical Location & Seq

Genomic Coordinates Forward (+)

390 .. 727

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8212148.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 338 bp

atggacttagacgccgacgtttcgcggtgggtcctcgagctcctcctccgcgaccgcgacaaggagagcgtcgccaagcgagtcctcgccgccgtgccgctctcgaaccaggactggcggttgaagaagaccgtcctcctccgaacgatcgagtccgaagtcttggacgaggcttcggtcaccgaagctatactagagtccttggagtcgatcgaggctttggaccgcggccaagggattccggtcacggactccatgagagcggcgtactgcgccgtggcgacggagtgcacggtcaagtttttggtttgctttggagggaagccgagcgggaagta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO Myb_DNA-binding

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

4.87

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06910 AT1G15720 AT5G58340 AT5G58340
fragaria_vesca	FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_5g00450 FvH4_5g00450 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240
malus_domestica	MD03G1052200.v1.1 MD10G1106900.v1.1 MD11G1054300.v1.1
prunus_persica	Prupe.6G041700_v2.0.a1
pyrus_communis	pycom03g04150 pycom11g04410
rosa_chinensis	RchiOBHm_Chr5g0000441 RchiOBHm_Chr5g0073101 RchiOBHm_Chr7g0218431 RchiOBHm_Chr7g0221531 RchiOBHm_Chr7g0221541
rosa_laevigata	RLG00000002155 RLG00000002374 RLG00000030867 RLG00000036363
rosa_multiflora	Rmu_co8212148.1_g000001 Rmu_co8273167.1_g000001 Rmu_sc0001680.1_g000002 Rmu_sc0003949.1_g000004 Rmu_sc0005592.1_g000024 Rmu_sc0005994.1_g000013 Rmu_sc0029255.1_g000001 Rmu_sc0029256.1_g000001 Rmu_ssc0000385.1_g000016
rosa_roxburghii	Rroxscaffold_1G00008100 Rroxscaffold_1G00008150 Rroxscaffold_1G00075720 Rroxscaffold_3G00240990 Rroxscaffold_5G00361570
rosa_rugosa	Rorug04G0383600.1 Rorug04G0383700 Rorug05G0421100 Rorug07G0177000
rosa_samantha	Rh5AG003600 Rh5AG478100 Rh5BG004800 Rh5BG498800 Rh5CG003900 Rh5CG522000 Rh5DG003700 Rh5DG510900 Rh7AG318400 Rh7BG310300 Rh7CG335200 Rh7CG335300 Rh7DG317400
rosa_wichuraiana	Rw5G000360 Rw5G044400 Rw7G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	100, 263, 330
AccII	CGCG	4 cut(s)	25, 51, 57, 228
AcoI	YGGCCR	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	40, 188
AluI	AGCT	2 cut(s)	40, 188
Alw21I	GWGCWC	2 cut(s)	42, 293
Alw44I	GTGCAC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	31, 223
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	31, 223
BaeGI	GKGCMC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	42, 293
BceAI	ACGGC	2 cut(s)	77, 260
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	4 cut(s)	90, 98, 229, 264
BlsI	GCNGC	4 cut(s)	91, 99, 230, 265
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	31, 223
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	31, 223
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	201, 226, 232, 276
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	4 cut(s)	201, 226, 232, 276
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	3 cut(s)	32, 35, 128
BseSI	GKGCMC	1 cut(s)	293
Bsh1236I	CGCG	4 cut(s)	25, 51, 57, 228
Bsh1285I	CGRYCG	3 cut(s)	55, 150, 213
BshFI	GGCC	1 cut(s)	231
BsiEI	CGRYCG	3 cut(s)	55, 150, 213
BsiHKAI	GWGCWC	2 cut(s)	42, 293
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	42, 293
Bsp143I	GATC	2 cut(s)	147, 210
BspANI	GGCC	1 cut(s)	231
BspFNI	CGCG	4 cut(s)	25, 51, 57, 228
BspLI	GGNNCC	1 cut(s)	32
BsrBI	CCGCTC	3 cut(s)	100, 263, 330
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	4 cut(s)	201, 226, 232, 276
BssMI	GATC	2 cut(s)	147, 210
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	201, 232
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	133, 295
BstACI	GRCGYC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	7
BstDSI	CCRYGG	2 cut(s)	226, 276
BstEII	GGTNACC	1 cut(s)	178
BstFNI	CGCG	4 cut(s)	25, 51, 57, 228
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	150, 213
BstMBI	GATC	2 cut(s)	147, 210
BstMCI	CGRYCG	3 cut(s)	55, 150, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	4 cut(s)	25, 51, 57, 228
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	2 cut(s)	226, 276
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	31, 223
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	2 cut(s)	20, 58
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	40, 173, 188, 218, 231, 325
CviKI_1	RGCY	6 cut(s)	40, 173, 188, 218, 231, 325
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	2 cut(s)	149, 212
DpnII	GATC	2 cut(s)	147, 210
EaeI	YGGCCR	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	201, 232
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	31, 223
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	201, 232
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	2 cut(s)	201, 232
FaeI	CATG	1 cut(s)	259
FaiI	YATR	2 cut(s)	191, 257
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	4 cut(s)	90, 98, 229, 264
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	4 cut(s)	90, 98, 229, 264
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	90, 98, 229, 264
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	2 cut(s)	20, 58
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	6 cut(s)	81, 152, 197, 206, 238, 251
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	2 cut(s)	143, 157
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	3 cut(s)	20, 74, 286
HpyCH4III	ACNGT	2 cut(s)	133, 295
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	7
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	147, 210
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	95, 100, 122, 255
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	178, 244
MalI	GATC	2 cut(s)	149, 212
MbiI	CCGCTC	3 cut(s)	100, 263, 330
MboI	GATC	2 cut(s)	147, 210
MboII	GAAGA	2 cut(s)	136, 139
MhlI	GDGCHC	2 cut(s)	42, 293
MlyI	GAGTC	5 cut(s)	90, 161, 206, 215, 245
MnlI	CCTC	9 cut(s)	44, 53, 56, 95, 146, 149, 163, 208, 311
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	4 cut(s)	25, 51, 57, 228
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	2 cut(s)	147, 210
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	178, 244
PaeR7I	CTCGAG	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	91, 99, 230, 265
Ple19I	CGATCG	2 cut(s)	150, 213
PleI	GAGTC	5 cut(s)	89, 160, 205, 214, 245
PpsI	GAGTC	5 cut(s)	89, 160, 205, 214, 245
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	31, 223
PspPPI	RGGWCCY	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	35
PvuI	CGATCG	2 cut(s)	150, 213
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	229
SatI	GCNGC	4 cut(s)	90, 98, 229, 264
Sau3AI	GATC	2 cut(s)	147, 210
Sau96I	GGNCC	2 cut(s)	31, 223
SchI	GAGTC	5 cut(s)	90, 161, 206, 215, 245
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	42, 293
SetI	ASST	3 cut(s)	21, 42, 190
Sfr274I	CTCGAG	1 cut(s)	35
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	2 cut(s)	31, 223
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	201, 232
TaaI	ACNGT	2 cut(s)	133, 295
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	36, 104, 150, 209, 213
TaqII	GACCGA	1 cut(s)	166
TauI	GCSGC	4 cut(s)	92, 100, 231, 266
TfiI	GAWTC	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	178, 244
Tsp45I	GTSAC	2 cut(s)	178, 244
TspGWI	ACGGA	2 cut(s)	263, 299
VneI	GTGCAC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	31, 223
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.