SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1332 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 11, 179 |
| AatII | GACGTC | 1 cut(s) | 15 |
| Acc36I | ACCTGC | 2 cut(s) | 667, 1132 |
| AccB1I | GGYRCC | 1 cut(s) | 826 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1048 |
| AccBSI | CCGCTC | 1 cut(s) | 100 |
| AccI | GTMKAC | 1 cut(s) | 15 |
| AccII | CGCG | 6 cut(s) | 25, 95, 231, 284, 967, 1341 |
| AclWI | GGATC | 3 cut(s) | 187, 351, 1568 |
| AcoI | YGGCCR | 1 cut(s) | 232 |
| AcsI | RAATTY | 1 cut(s) | 1143 |
| AcuI | CTGAAG | 3 cut(s) | 162, 1275, 1713 |
| AcyI | GRCGYC | 1 cut(s) | 12 |
| AfaI | GTAC | 6 cut(s) | 272, 329, 1302, 1399, 1648, 1818 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1023, 1048, 1625 |
| AflII | CTTAAG | 2 cut(s) | 1184, 1280 |
| AflIII | ACRYGT | 1 cut(s) | 1830 |
| AgsI | TTSAA | 5 cut(s) | 127, 415, 862, 1121, 1418 |
| AjnI | CCWGG | 2 cut(s) | 33, 1624 |
| AluBI | AGCT | 5 cut(s) | 397, 472, 533, 932, 1499 |
| AluI | AGCT | 5 cut(s) | 397, 472, 533, 932, 1499 |
| Alw21I | GWGCWC | 1 cut(s) | 296 |
| Alw26I | GTCTC | 2 cut(s) | 59, 1032 |
| Alw44I | GTGCAC | 1 cut(s) | 292 |
| AlwI | GGATC | 3 cut(s) | 187, 351, 1568 |
| AoxI | GGCC | 4 cut(s) | 232, 255, 567, 1430 |
| ApaLI | GTGCAC | 1 cut(s) | 292 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| ApoI | RAATTY | 1 cut(s) | 1143 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 705, 737 |
| AspLEI | GCGC | 5 cut(s) | 97, 278, 502, 967, 1341 |
| AspS9I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1178, 1430, 1616 |
| AsuC2I | CCSGG | 1 cut(s) | 1503 |
| AsuII | TTCGAA | 1 cut(s) | 1564 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaII | GGWCC | 5 cut(s) | 31, 226, 548, 1178, 1616 |
| BaeGI | GKGCMC | 5 cut(s) | 296, 1162, 1494, 1553, 1718 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 768, 801, 975, 1008 |
| BanI | GGYRCC | 1 cut(s) | 826 |
| BbsI | GAAGAC | 2 cut(s) | 137, 1833 |
| Bbv12I | GWGCWC | 1 cut(s) | 296 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BceAI | ACGGC | 3 cut(s) | 74, 263, 554 |
| BciT130I | CCWGG | 2 cut(s) | 35, 1626 |
| BciVI | GTATCC | 1 cut(s) | 1255 |
| BclI | TGATCA | 2 cut(s) | 1435, 1477 |
| BcnI | CCSGG | 1 cut(s) | 1503 |
| BcoDI | GTCTC | 2 cut(s) | 59, 1032 |
| BfaI | CTAG | 3 cut(s) | 473, 489, 1679 |
| BfmI | CTRYAG | 1 cut(s) | 1308 |
| BfrI | CTTAAG | 2 cut(s) | 1184, 1280 |
| BfuAI | ACCTGC | 2 cut(s) | 667, 1132 |
| BfuI | GTATCC | 1 cut(s) | 1255 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 263 |
| BglII | AGATCT | 2 cut(s) | 1358, 1588 |
| BisI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 968 |
| BlsI | GCNGC | 5 cut(s) | 99, 233, 268, 442, 969 |
| BmcAI | AGTACT | 1 cut(s) | 1648 |
| Bme1390I | CCNGG | 3 cut(s) | 35, 1503, 1626 |
| Bme18I | GGWCC | 5 cut(s) | 31, 226, 548, 1178, 1616 |
| BmgT120I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1178, 1430, 1616 |
| BmiI | GGNNCC | 3 cut(s) | 32, 709, 828 |
| BmrFI | CCNGG | 3 cut(s) | 35, 1503, 1626 |
| BmrI | ACTGGG | 2 cut(s) | 825, 1437 |
| BmsI | GCATC | 6 cut(s) | 487, 1186, 1207, 1229, 1507, 1529 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BmuI | ACTGGG | 2 cut(s) | 825, 1437 |
| BpiI | GAAGAC | 2 cut(s) | 137, 1833 |
| BpmI | CTGGAG | 3 cut(s) | 56, 689, 1456 |
| Bpu14I | TTCGAA | 1 cut(s) | 1564 |
| BpuMI | CCSGG | 1 cut(s) | 1503 |
| BsaAI | YACGTR | 1 cut(s) | 1243 |
| BsaHI | GRCGYC | 1 cut(s) | 12 |
| BsaI | GGTCTC | 2 cut(s) | 59, 1032 |
| BsaJI | CCNNGG | 6 cut(s) | 204, 229, 235, 249, 1148, 1625 |
| BsaWI | WCCGGW | 1 cut(s) | 754 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 921, 951 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1023, 1048, 1625 |
| Bse1I | ACTGG | 5 cut(s) | 122, 672, 820, 1432, 1473 |
| BseBI | CCWGG | 2 cut(s) | 35, 1626 |
| BseDI | CCNNGG | 6 cut(s) | 204, 229, 235, 249, 1148, 1625 |
| BseGI | GGATG | 4 cut(s) | 486, 1222, 1520, 1675 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1023, 1048, 1625 |
| BseMII | CTCAG | 3 cut(s) | 494, 1126, 1353 |
| BseNI | ACTGG | 5 cut(s) | 122, 672, 820, 1432, 1473 |
| BseRI | GAGGAG | 4 cut(s) | 35, 131, 392, 1807 |
| BseSI | GKGCMC | 5 cut(s) | 296, 1162, 1494, 1553, 1718 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| BsgI | GTGCAG | 2 cut(s) | 695, 1605 |
| Bsh1236I | CGCG | 6 cut(s) | 25, 95, 231, 284, 967, 1341 |
| BshFI | GGCC | 4 cut(s) | 234, 257, 569, 1432 |
| BshNI | GGYRCC | 1 cut(s) | 826 |
| BsiHKAI | GWGCWC | 1 cut(s) | 296 |
| BsiSI | CCGG | 3 cut(s) | 755, 1346, 1503 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1023, 1048, 1625 |
| BsmAI | GTCTC | 2 cut(s) | 59, 1032 |
| BsmI | GAATGC | 1 cut(s) | 1750 |
| BsnI | GGCC | 4 cut(s) | 234, 257, 569, 1432 |
| Bso31I | GGTCTC | 2 cut(s) | 59, 1032 |
| Bsp119I | TTCGAA | 1 cut(s) | 1564 |
| Bsp1286I | GDGCHC | 5 cut(s) | 296, 1162, 1494, 1553, 1718 |
| Bsp1407I | TGTACA | 1 cut(s) | 1300 |
| Bsp143I | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| Bsp68I | TCGCGA | 1 cut(s) | 284 |
| BspANI | GGCC | 4 cut(s) | 234, 257, 569, 1432 |
| BspCNI | CTCAG | 3 cut(s) | 495, 1125, 1354 |
| BspFNI | CGCG | 6 cut(s) | 25, 95, 231, 284, 967, 1341 |
| BspLI | GGNNCC | 3 cut(s) | 32, 709, 828 |
| BspMI | ACCTGC | 2 cut(s) | 667, 1132 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BspPI | GGATC | 3 cut(s) | 187, 351, 1568 |
| BspT104I | TTCGAA | 1 cut(s) | 1564 |
| BspT107I | GGYRCC | 1 cut(s) | 826 |
| BspTI | CTTAAG | 2 cut(s) | 1184, 1280 |
| BspTNI | GGTCTC | 2 cut(s) | 59, 1032 |
| BsrBI | CCGCTC | 1 cut(s) | 100 |
| BsrGI | TGTACA | 1 cut(s) | 1300 |
| BsrI | ACTGG | 5 cut(s) | 122, 672, 820, 1432, 1473 |
| BssECI | CCNNGG | 6 cut(s) | 204, 229, 235, 249, 1148, 1625 |
| BssMI | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| BssNI | GRCGYC | 1 cut(s) | 12 |
| BssT1I | CCWWGG | 2 cut(s) | 204, 235 |
| Bst2UI | CCWGG | 2 cut(s) | 35, 1626 |
| Bst4CI | ACNGT | 6 cut(s) | 136, 298, 1006, 1055, 1103, 1583 |
| BstACI | GRCGYC | 1 cut(s) | 12 |
| BstAFI | CTTAAG | 2 cut(s) | 1184, 1280 |
| BstAUI | TGTACA | 1 cut(s) | 1300 |
| BstBAI | YACGTR | 1 cut(s) | 1243 |
| BstBI | TTCGAA | 1 cut(s) | 1564 |
| BstC8I | GCNNGC | 4 cut(s) | 395, 474, 1343, 1718 |
| BstDEI | CTNAG | 8 cut(s) | 7, 307, 503, 780, 1112, 1163, 1362, 1788 |
| BstDSI | CCRYGG | 2 cut(s) | 229, 249 |
| BstEII | GGTNACC | 2 cut(s) | 1037, 1083 |
| BstF5I | GGATG | 4 cut(s) | 486, 1222, 1520, 1675 |
| BstFNI | CGCG | 6 cut(s) | 25, 95, 231, 284, 967, 1341 |
| BstHHI | GCGC | 5 cut(s) | 97, 278, 502, 967, 1341 |
| BstKTI | GATC | 7 cut(s) | 195, 346, 1361, 1438, 1480, 1576, 1591 |
| BstMAI | GTCTC | 2 cut(s) | 59, 1032 |
| BstMBI | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 263, 275, 689 |
| BstNI | CCWGG | 2 cut(s) | 35, 1626 |
| BstPI | GGTNACC | 2 cut(s) | 1037, 1083 |
| BstSCI | CCNGG | 3 cut(s) | 33, 1501, 1624 |
| BstSFI | CTRYAG | 1 cut(s) | 1308 |
| BstSLI | GKGCMC | 5 cut(s) | 296, 1162, 1494, 1553, 1718 |
| BstSNI | TACGTA | 1 cut(s) | 1243 |
| BstUI | CGCG | 6 cut(s) | 25, 95, 231, 284, 967, 1341 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BstV2I | GAAGAC | 2 cut(s) | 137, 1833 |
| BstX2I | RGATCY | 2 cut(s) | 1358, 1588 |
| BstYI | RGATCY | 2 cut(s) | 1358, 1588 |
| BsuI | GTATCC | 1 cut(s) | 1255 |
| BsuRI | GGCC | 4 cut(s) | 234, 257, 569, 1432 |
| BtgI | CCRYGG | 2 cut(s) | 229, 249 |
| BtgZI | GCGATG | 1 cut(s) | 55 |
| BtsCI | GGATG | 4 cut(s) | 486, 1222, 1520, 1675 |
| BtsIMutI | CAGTG | 4 cut(s) | 1251, 1425, 1480, 1757 |
| BtuMI | TCGCGA | 1 cut(s) | 284 |
| BveI | ACCTGC | 2 cut(s) | 667, 1132 |
| Cac8I | GCNNGC | 4 cut(s) | 395, 474, 1343, 1718 |
| CfoI | GCGC | 5 cut(s) | 97, 278, 502, 967, 1341 |
| Cfr13I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1178, 1430, 1616 |
| Cfr42I | CCGCGG | 1 cut(s) | 232 |
| CseI | GACGC | 1 cut(s) | 182 |
| Csp6I | GTAC | 6 cut(s) | 271, 328, 1301, 1398, 1647, 1817 |
| CviAII | CATG | 5 cut(s) | 259, 447, 1175, 1379, 1820 |
| CviQI | GTAC | 6 cut(s) | 271, 328, 1301, 1398, 1647, 1817 |
| DdeI | CTNAG | 8 cut(s) | 7, 307, 503, 780, 1112, 1163, 1362, 1788 |
| DpnI | GATC | 7 cut(s) | 194, 345, 1360, 1437, 1479, 1575, 1590 |
| DpnII | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| DraI | TTTAAA | 1 cut(s) | 1737 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 11, 179 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 11, 179 |
| EaeI | YGGCCR | 1 cut(s) | 232 |
| EciI | GGCGGA | 1 cut(s) | 422 |
| Eco105I | TACGTA | 1 cut(s) | 1243 |
| Eco130I | CCWWGG | 2 cut(s) | 204, 235 |
| Eco31I | GGTCTC | 2 cut(s) | 59, 1032 |
| Eco47I | GGWCC | 5 cut(s) | 31, 226, 548, 1178, 1616 |
| Eco57I | CTGAAG | 3 cut(s) | 162, 1275, 1713 |
| Eco91I | GGTNACC | 2 cut(s) | 1037, 1083 |
| EcoO109I | RGGNCCY | 1 cut(s) | 31 |
| EcoO65I | GGTNACC | 2 cut(s) | 1037, 1083 |
| EcoRII | CCWGG | 2 cut(s) | 33, 1624 |
| EcoT14I | CCWWGG | 2 cut(s) | 204, 235 |
| EcoT22I | ATGCAT | 2 cut(s) | 1222, 1522 |
| ErhI | CCWWGG | 2 cut(s) | 204, 235 |
| FaeI | CATG | 5 cut(s) | 262, 450, 1178, 1382, 1823 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1263, 1295 |
| FatI | CATG | 5 cut(s) | 258, 446, 1174, 1378, 1819 |
| FauI | CCCGC | 3 cut(s) | 907, 1056, 1329 |
| FauNDI | CATATG | 1 cut(s) | 582 |
| FbaI | TGATCA | 2 cut(s) | 1435, 1477 |
| FblI | GTMKAC | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 968 |
| FokI | GGATG | 4 cut(s) | 493, 1229, 1507, 1682 |
| Fsp4HI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 968 |
| FspBI | CTAG | 3 cut(s) | 473, 489, 1679 |
| GlaI | GCGC | 5 cut(s) | 96, 277, 501, 966, 1340 |
| GluI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 968 |
| GsuI | CTGGAG | 3 cut(s) | 56, 689, 1456 |
| HaeIII | GGCC | 4 cut(s) | 234, 257, 569, 1432 |
| HapII | CCGG | 3 cut(s) | 755, 1346, 1503 |
| HgaI | GACGC | 1 cut(s) | 182 |
| HhaI | GCGC | 5 cut(s) | 97, 278, 502, 967, 1341 |
| Hin1I | GRCGYC | 1 cut(s) | 12 |
| Hin1II | CATG | 5 cut(s) | 262, 450, 1178, 1382, 1823 |
| Hin6I | GCGC | 5 cut(s) | 95, 276, 500, 965, 1339 |
| HinP1I | GCGC | 5 cut(s) | 95, 276, 500, 965, 1339 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 531 |
| HinfI | GANTC | 4 cut(s) | 81, 155, 209, 1673 |
| HpaII | CCGG | 3 cut(s) | 755, 1346, 1503 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 294, 1099 |
| Hpy188III | TCNNGA | 5 cut(s) | 103, 224, 283, 560, 903 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 294, 1099 |
| Hpy99I | CGWCG | 6 cut(s) | 17, 95, 173, 176, 284, 289 |
| HpyAV | CCTTC | 5 cut(s) | 912, 1070, 1534, 1539, 1688 |
| HpyCH4III | ACNGT | 6 cut(s) | 136, 298, 1006, 1055, 1103, 1583 |
| HpyCH4IV | ACGT | 4 cut(s) | 12, 1242, 1639, 1832 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 263, 275, 689 |
| HpyF3I | CTNAG | 8 cut(s) | 7, 307, 503, 780, 1112, 1163, 1362, 1788 |
| HpySE526I | ACGT | 4 cut(s) | 12, 1242, 1639, 1832 |
| Hsp92I | GRCGYC | 1 cut(s) | 12 |
| Hsp92II | CATG | 5 cut(s) | 262, 450, 1178, 1382, 1823 |
| HspAI | GCGC | 5 cut(s) | 95, 276, 500, 965, 1339 |
| Ksp22I | TGATCA | 2 cut(s) | 1435, 1477 |
| KspI | CCGCGG | 1 cut(s) | 232 |
| Kzo9I | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| LmnI | GCTCC | 5 cut(s) | 105, 390, 929, 1504, 1812 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| LweI | GCATC | 6 cut(s) | 487, 1186, 1207, 1229, 1507, 1529 |
| MaeI | CTAG | 3 cut(s) | 473, 489, 1679 |
| MaeII | ACGT | 4 cut(s) | 12, 1242, 1639, 1832 |
| MaeIII | GTNAC | 7 cut(s) | 50, 181, 1000, 1037, 1083, 1312, 1686 |
| MalI | GATC | 7 cut(s) | 194, 345, 1360, 1437, 1479, 1575, 1590 |
| MbiI | CCGCTC | 1 cut(s) | 100 |
| MboI | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| MboII | GAAGA | 6 cut(s) | 139, 142, 435, 1403, 1835, 1838 |
| MflI | RGATCY | 2 cut(s) | 1358, 1588 |
| MhlI | GDGCHC | 5 cut(s) | 296, 1162, 1494, 1553, 1718 |
| MluCI | AATT | 7 cut(s) | 713, 800, 807, 1143, 1237, 1333, 1350 |
| MlyI | GAGTC | 4 cut(s) | 75, 164, 218, 1667 |
| MmeI | TCCRAC | 3 cut(s) | 625, 1490, 1548 |
| Mph1103I | ATGCAT | 2 cut(s) | 1222, 1522 |
| MseI | TTAA | 7 cut(s) | 588, 908, 1092, 1185, 1281, 1736, 1835 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1173, 1383 |
| MspA1I | CMGCKG | 1 cut(s) | 231 |
| MspCI | CTTAAG | 2 cut(s) | 1184, 1280 |
| MspI | CCGG | 3 cut(s) | 755, 1346, 1503 |
| MspR9I | CCNGG | 3 cut(s) | 35, 1503, 1626 |
| Mva1269I | GAATGC | 1 cut(s) | 1750 |
| MvaI | CCWGG | 2 cut(s) | 35, 1626 |
| MvnI | CGCG | 6 cut(s) | 25, 95, 231, 284, 967, 1341 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 263, 275, 689 |
| NciI | CCSGG | 1 cut(s) | 1503 |
| NdeI | CATATG | 1 cut(s) | 582 |
| NdeII | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 5 cut(s) | 262, 450, 1178, 1382, 1823 |
| NlaIV | GGNNCC | 3 cut(s) | 32, 709, 828 |
| NmuCI | GTSAC | 6 cut(s) | 50, 181, 1000, 1083, 1312, 1686 |
| NruI | TCGCGA | 1 cut(s) | 284 |
| NsiI | ATGCAT | 2 cut(s) | 1222, 1522 |
| NspV | TTCGAA | 1 cut(s) | 1564 |
| PctI | GAATGC | 1 cut(s) | 1750 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1048 |
| PfoI | TCCNGGA | 2 cut(s) | 33, 1501 |
| PkrI | GCNGC | 5 cut(s) | 99, 233, 268, 442, 969 |
| PleI | GAGTC | 4 cut(s) | 75, 163, 217, 1667 |
| PpsI | GAGTC | 4 cut(s) | 75, 163, 217, 1667 |
| Ppu21I | YACGTR | 1 cut(s) | 1243 |
| PpuMI | RGGWCCY | 1 cut(s) | 31 |
| PsiI | TTATAA | 1 cut(s) | 1332 |
| Psp5II | RGGWCCY | 1 cut(s) | 31 |
| Psp6I | CCWGG | 2 cut(s) | 33, 1624 |
| PspEI | GGTNACC | 2 cut(s) | 1037, 1083 |
| PspGI | CCWGG | 2 cut(s) | 33, 1624 |
| PspN4I | GGNNCC | 3 cut(s) | 32, 709, 828 |
| PspPI | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1178, 1430, 1616 |
| PspPPI | RGGWCCY | 1 cut(s) | 31 |
| PsuI | RGATCY | 2 cut(s) | 1358, 1588 |
| RruI | TCGCGA | 1 cut(s) | 284 |
| RsaI | GTAC | 6 cut(s) | 272, 329, 1302, 1399, 1648, 1818 |
| RsaNI | GTAC | 6 cut(s) | 271, 328, 1301, 1398, 1647, 1817 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1173, 1383 |
| SacII | CCGCGG | 1 cut(s) | 232 |
| SalI | GTCGAC | 1 cut(s) | 14 |
| SaqAI | TTAA | 7 cut(s) | 588, 908, 1092, 1185, 1281, 1736, 1835 |
| SatI | GCNGC | 5 cut(s) | 98, 232, 267, 441, 968 |
| Sau3AI | GATC | 7 cut(s) | 192, 343, 1358, 1435, 1477, 1573, 1588 |
| Sau96I | GGNCC | 7 cut(s) | 31, 226, 548, 567, 1178, 1430, 1616 |
| ScaI | AGTACT | 1 cut(s) | 1648 |
| SchI | GAGTC | 4 cut(s) | 75, 164, 218, 1667 |
| ScrFI | CCNGG | 3 cut(s) | 35, 1503, 1626 |
| SduI | GDGCHC | 5 cut(s) | 296, 1162, 1494, 1553, 1718 |
| SfaNI | GCATC | 6 cut(s) | 487, 1186, 1207, 1229, 1507, 1529 |
| SfcI | CTRYAG | 1 cut(s) | 1308 |
| Sfr303I | CCGCGG | 1 cut(s) | 232 |
| SfuI | TTCGAA | 1 cut(s) | 1564 |
| SgrBI | CCGCGG | 1 cut(s) | 232 |
| SinI | GGWCC | 5 cut(s) | 31, 226, 548, 1178, 1616 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1173, 1383 |
| SmlI | CTYRAG | 2 cut(s) | 1184, 1280 |
| SmoI | CTYRAG | 2 cut(s) | 1184, 1280 |
| SnaBI | TACGTA | 1 cut(s) | 1243 |
| Sse9I | AATT | 7 cut(s) | 713, 800, 807, 1143, 1237, 1333, 1350 |
| SspMI | CTAG | 3 cut(s) | 473, 489, 1679 |
| StyD4I | CCNGG | 3 cut(s) | 33, 1501, 1624 |
| StyI | CCWWGG | 2 cut(s) | 204, 235 |
| TaaI | ACNGT | 6 cut(s) | 136, 298, 1006, 1055, 1103, 1583 |
| TaiI | ACGT | 4 cut(s) | 15, 1245, 1642, 1835 |
| TaqI | TCGA | 6 cut(s) | 15, 153, 198, 216, 464, 1564 |
| TaqII | GACCGA | 1 cut(s) | 776 |
| TasI | AATT | 7 cut(s) | 713, 800, 807, 1143, 1237, 1333, 1350 |
| TatI | WGTACW | 3 cut(s) | 327, 1300, 1646 |
| TauI | GCSGC | 4 cut(s) | 100, 234, 269, 970 |
| Tru1I | TTAA | 7 cut(s) | 588, 908, 1092, 1185, 1281, 1736, 1835 |
| Tru9I | TTAA | 7 cut(s) | 588, 908, 1092, 1185, 1281, 1736, 1835 |
| TscAI | CASTG | 4 cut(s) | 1258, 1432, 1480, 1764 |
| TseFI | GTSAC | 6 cut(s) | 50, 181, 1000, 1083, 1312, 1686 |
| TseI | GCWGC | 1 cut(s) | 440 |
| Tsp45I | GTSAC | 6 cut(s) | 50, 181, 1000, 1083, 1312, 1686 |
| TspDTI | ATGAA | 5 cut(s) | 497, 569, 678, 1712, 1836 |
| TspGWI | ACGGA | 6 cut(s) | 38, 266, 302, 1229, 1522, 1756 |
| TspRI | CASTG | 4 cut(s) | 1258, 1432, 1480, 1764 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1048 |
| Vha464I | CTTAAG | 2 cut(s) | 1184, 1280 |
| VneI | GTGCAC | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 5 cut(s) | 31, 226, 548, 1178, 1616 |
| XapI | RAATTY | 1 cut(s) | 1143 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 220 |
| XmiI | GTMKAC | 1 cut(s) | 15 |
| XspI | CTAG | 3 cut(s) | 473, 489, 1679 |
| ZraI | GACGTC | 1 cut(s) | 13 |
| ZrmI | AGTACT | 1 cut(s) | 1648 |
| Zsp2I | ATGCAT | 2 cut(s) | 1222, 1522 |