SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 743 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 11 |
| AatII | GACGTC | 1 cut(s) | 15 |
| Acc36I | ACCTGC | 1 cut(s) | 743 |
| Acc65I | GGTACC | 1 cut(s) | 1459 |
| AccB1I | GGYRCC | 1 cut(s) | 1459 |
| AccI | GTMKAC | 3 cut(s) | 15, 162, 1785 |
| AccII | CGCG | 3 cut(s) | 25, 57, 2142 |
| AciI | CCGC | 7 cut(s) | 55, 261, 413, 557, 698, 950, 2140 |
| AclWI | GGATC | 8 cut(s) | 181, 357, 967, 1017, 1189, 1338, 1553, 1733 |
| AcoI | YGGCCR | 2 cut(s) | 276, 633 |
| AcsI | RAATTY | 2 cut(s) | 1234, 1472 |
| AcuI | CTGAAG | 3 cut(s) | 684, 1461, 1515 |
| AcyI | GRCGYC | 1 cut(s) | 12 |
| AdeI | CACNNNGTG | 1 cut(s) | 285 |
| AfaI | GTAC | 9 cut(s) | 289, 335, 723, 1461, 1770, 1894, 1903, 2015, 2094 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AflII | CTTAAG | 1 cut(s) | 2080 |
| AjnI | CCWGG | 3 cut(s) | 840, 1028, 1788 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 524, 556 |
| Alw21I | GWGCWC | 4 cut(s) | 42, 138, 1307, 1542 |
| Alw26I | GTCTC | 6 cut(s) | 45, 181, 887, 935, 1223, 1583 |
| AlwI | GGATC | 8 cut(s) | 181, 357, 967, 1017, 1189, 1338, 1553, 1733 |
| AoxI | GGCC | 5 cut(s) | 258, 276, 633, 707, 1682 |
| ApeKI | GCWGC | 2 cut(s) | 536, 1820 |
| ApoI | RAATTY | 2 cut(s) | 1234, 1472 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 159, 191, 464, 496 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1837 |
| Asp718I | GGTACC | 1 cut(s) | 1459 |
| AspLEI | GCGC | 2 cut(s) | 272, 508 |
| AspS9I | GGNCC | 7 cut(s) | 82, 554, 707, 1104, 1259, 1418, 1682 |
| AsuHPI | GGTGA | 6 cut(s) | 713, 815, 965, 1013, 1064, 1961 |
| AsuII | TTCGAA | 1 cut(s) | 2151 |
| AvaII | GGWCC | 5 cut(s) | 82, 554, 1104, 1259, 1418 |
| BaeGI | GKGCMC | 1 cut(s) | 594 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1443, 1476 |
| BalI | TGGCCA | 2 cut(s) | 278, 635 |
| BanI | GGYRCC | 1 cut(s) | 1459 |
| BanII | GRGCYC | 4 cut(s) | 42, 1307, 1542, 1982 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 248, 280 |
| BauI | CACGAG | 1 cut(s) | 493 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| Bbv12I | GWGCWC | 4 cut(s) | 42, 138, 1307, 1542 |
| BbvI | GCAGC | 2 cut(s) | 548, 1807 |
| BccI | CCATC | 8 cut(s) | 21, 155, 800, 950, 1669, 1729, 1873, 2049 |
| BceAI | ACGGC | 3 cut(s) | 257, 329, 544 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1287, 1321, 1658, 1692 |
| BciT130I | CCWGG | 3 cut(s) | 842, 1030, 1790 |
| BclI | TGATCA | 1 cut(s) | 619 |
| BcoDI | GTCTC | 6 cut(s) | 45, 181, 887, 935, 1223, 1583 |
| BfaI | CTAG | 7 cut(s) | 324, 1089, 1311, 1383, 1413, 1749, 1872 |
| BfrI | CTTAAG | 1 cut(s) | 2080 |
| BfuAI | ACCTGC | 1 cut(s) | 743 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 641 |
| BglII | AGATCT | 2 cut(s) | 1598, 1616 |
| BisI | GCNGC | 3 cut(s) | 261, 537, 1821 |
| BlsI | GCNGC | 3 cut(s) | 262, 538, 1822 |
| BmcAI | AGTACT | 2 cut(s) | 335, 1894 |
| Bme1390I | CCNGG | 3 cut(s) | 842, 1030, 1790 |
| Bme18I | GGWCC | 5 cut(s) | 82, 554, 1104, 1259, 1418 |
| BmgT120I | GGNCC | 7 cut(s) | 82, 554, 707, 1104, 1259, 1418, 1682 |
| BmiI | GGNNCC | 5 cut(s) | 83, 398, 555, 1461, 1480 |
| BmrFI | CCNGG | 3 cut(s) | 842, 1030, 1790 |
| BmsI | GCATC | 9 cut(s) | 331, 433, 493, 814, 937, 1426, 1561, 1807, 1945 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| Bpu14I | TTCGAA | 1 cut(s) | 2151 |
| Bsa29I | ATCGAT | 1 cut(s) | 185 |
| BsaHI | GRCGYC | 1 cut(s) | 12 |
| BsaI | GGTCTC | 3 cut(s) | 45, 181, 1583 |
| BsaJI | CCNNGG | 5 cut(s) | 243, 273, 345, 594, 1789 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| Bse1I | ACTGG | 5 cut(s) | 1054, 1332, 1527, 2092, 2120 |
| Bse3DI | GCAATG | 1 cut(s) | 69 |
| BseBI | CCWGG | 3 cut(s) | 842, 1030, 1790 |
| BseCI | ATCGAT | 1 cut(s) | 185 |
| BseDI | CCNNGG | 5 cut(s) | 243, 273, 345, 594, 1789 |
| BseGI | GGATG | 7 cut(s) | 346, 439, 492, 829, 1441, 1721, 1771 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseMI | GCAATG | 1 cut(s) | 69 |
| BseMII | CTCAG | 7 cut(s) | 21, 273, 500, 1348, 1578, 1791, 2154 |
| BseNI | ACTGG | 5 cut(s) | 1054, 1332, 1527, 2092, 2120 |
| BseRI | GAGGAG | 4 cut(s) | 128, 409, 986, 1034 |
| BseSI | GKGCMC | 1 cut(s) | 594 |
| BseXI | GCAGC | 2 cut(s) | 548, 1807 |
| BseYI | CCCAGC | 1 cut(s) | 1679 |
| BsgI | GTGCAG | 1 cut(s) | 1671 |
| Bsh1236I | CGCG | 3 cut(s) | 25, 57, 2142 |
| BshFI | GGCC | 5 cut(s) | 260, 278, 635, 709, 1684 |
| BshNI | GGYRCC | 1 cut(s) | 1459 |
| BshVI | ATCGAT | 1 cut(s) | 185 |
| BsiHKAI | GWGCWC | 4 cut(s) | 42, 138, 1307, 1542 |
| BslFI | GGGAC | 4 cut(s) | 567, 1003, 1147, 1262 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BsmAI | GTCTC | 6 cut(s) | 45, 181, 887, 935, 1223, 1583 |
| BsmFI | GGGAC | 4 cut(s) | 567, 1003, 1147, 1262 |
| BsnI | GGCC | 5 cut(s) | 260, 278, 635, 709, 1684 |
| Bso31I | GGTCTC | 3 cut(s) | 45, 181, 1583 |
| Bsp119I | TTCGAA | 1 cut(s) | 2151 |
| Bsp1286I | GDGCHC | 6 cut(s) | 42, 138, 594, 1307, 1542, 1982 |
| Bsp1407I | TGTACA | 1 cut(s) | 2092 |
| Bsp68I | TCGCGA | 1 cut(s) | 25 |
| BspACI | CCGC | 7 cut(s) | 55, 261, 413, 557, 698, 950, 2140 |
| BspANI | GGCC | 5 cut(s) | 260, 278, 635, 709, 1684 |
| BspCNI | CTCAG | 7 cut(s) | 20, 274, 501, 1347, 1579, 1792, 2155 |
| BspDI | ATCGAT | 1 cut(s) | 185 |
| BspFNI | CGCG | 3 cut(s) | 25, 57, 2142 |
| BspLI | GGNNCC | 5 cut(s) | 83, 398, 555, 1461, 1480 |
| BspMI | ACCTGC | 1 cut(s) | 743 |
| BspPI | GGATC | 8 cut(s) | 181, 357, 967, 1017, 1189, 1338, 1553, 1733 |
| BspQI | GCTCTTC | 1 cut(s) | 1206 |
| BspT104I | TTCGAA | 1 cut(s) | 2151 |
| BspT107I | GGYRCC | 1 cut(s) | 1459 |
| BspTI | CTTAAG | 1 cut(s) | 2080 |
| BspTNI | GGTCTC | 3 cut(s) | 45, 181, 1583 |
| BsrDI | GCAATG | 1 cut(s) | 69 |
| BsrGI | TGTACA | 1 cut(s) | 2092 |
| BsrI | ACTGG | 5 cut(s) | 1054, 1332, 1527, 2092, 2120 |
| BssECI | CCNNGG | 5 cut(s) | 243, 273, 345, 594, 1789 |
| BssNAI | GTATAC | 1 cut(s) | 163 |
| BssNI | GRCGYC | 1 cut(s) | 12 |
| BssSI | CACGAG | 1 cut(s) | 493 |
| BssT1I | CCWWGG | 1 cut(s) | 594 |
| Bst1107I | GTATAC | 1 cut(s) | 163 |
| Bst2BI | CACGAG | 1 cut(s) | 493 |
| Bst2UI | CCWGG | 3 cut(s) | 842, 1030, 1790 |
| Bst4CI | ACNGT | 6 cut(s) | 133, 292, 631, 901, 1126, 1594 |
| Bst6I | CTCTTC | 2 cut(s) | 1206, 2148 |
| BstACI | GRCGYC | 1 cut(s) | 12 |
| BstAFI | CTTAAG | 1 cut(s) | 2080 |
| BstAUI | TGTACA | 1 cut(s) | 2092 |
| BstBI | TTCGAA | 1 cut(s) | 2151 |
| BstC8I | GCNNGC | 6 cut(s) | 401, 519, 1164, 1307, 1960, 1964 |
| BstDEI | CTNAG | 9 cut(s) | 7, 282, 509, 1334, 1587, 1800, 1829, 2034, 2163 |
| BstDSI | CCRYGG | 3 cut(s) | 243, 273, 345 |
| BstF5I | GGATG | 7 cut(s) | 346, 439, 492, 829, 1441, 1721, 1771 |
| BstFNI | CGCG | 3 cut(s) | 25, 57, 2142 |
| BstHHI | GCGC | 2 cut(s) | 272, 508 |
| BstMAI | GTCTC | 6 cut(s) | 45, 181, 887, 935, 1223, 1583 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 269, 514, 542, 641, 788, 833, 842, 1514 |
| BstNI | CCWGG | 3 cut(s) | 842, 1030, 1790 |
| BstSCI | CCNGG | 3 cut(s) | 840, 1028, 1788 |
| BstSLI | GKGCMC | 1 cut(s) | 594 |
| BstUI | CGCG | 3 cut(s) | 25, 57, 2142 |
| BstV1I | GCAGC | 2 cut(s) | 548, 1807 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| BstX2I | RGATCY | 5 cut(s) | 959, 1181, 1330, 1598, 1616 |
| BstYI | RGATCY | 5 cut(s) | 959, 1181, 1330, 1598, 1616 |
| BstZ17I | GTATAC | 1 cut(s) | 163 |
| Bsu15I | ATCGAT | 1 cut(s) | 185 |
| BsuRI | GGCC | 5 cut(s) | 260, 278, 635, 709, 1684 |
| BsuTUI | ATCGAT | 1 cut(s) | 185 |
| BtgI | CCRYGG | 3 cut(s) | 243, 273, 345 |
| BtgZI | GCGATG | 1 cut(s) | 40 |
| BtsCI | GGATG | 7 cut(s) | 346, 439, 492, 829, 1441, 1721, 1771 |
| BtsI | GCAGTG | 1 cut(s) | 1617 |
| BtsIMutI | CAGTG | 4 cut(s) | 279, 636, 1617, 1797 |
| BtuMI | TCGCGA | 1 cut(s) | 25 |
| BveI | ACCTGC | 1 cut(s) | 743 |
| Cac8I | GCNNGC | 6 cut(s) | 401, 519, 1164, 1307, 1960, 1964 |
| CfoI | GCGC | 2 cut(s) | 272, 508 |
| Cfr13I | GGNCC | 7 cut(s) | 82, 554, 707, 1104, 1259, 1418, 1682 |
| ClaI | ATCGAT | 1 cut(s) | 185 |
| CseI | GACGC | 1 cut(s) | 1416 |
| Csp6I | GTAC | 9 cut(s) | 288, 334, 722, 1460, 1769, 1893, 1902, 2014, 2093 |
| CviAII | CATG | 3 cut(s) | 253, 1628, 2194 |
| CviQI | GTAC | 9 cut(s) | 288, 334, 722, 1460, 1769, 1893, 1902, 2014, 2093 |
| DdeI | CTNAG | 9 cut(s) | 7, 282, 509, 1334, 1587, 1800, 1829, 2034, 2163 |
| DraIII | CACNNNGTG | 1 cut(s) | 285 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 11 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 11 |
| EaeI | YGGCCR | 2 cut(s) | 276, 633 |
| Eam1104I | CTCTTC | 2 cut(s) | 1206, 2148 |
| EarI | CTCTTC | 2 cut(s) | 1206, 2148 |
| EciI | GGCGGA | 1 cut(s) | 428 |
| Ecl136II | GAGCTC | 3 cut(s) | 40, 1305, 1540 |
| Eco130I | CCWWGG | 1 cut(s) | 594 |
| Eco24I | GRGCYC | 4 cut(s) | 42, 1307, 1542, 1982 |
| Eco31I | GGTCTC | 3 cut(s) | 45, 181, 1583 |
| Eco32I | GATATC | 1 cut(s) | 223 |
| Eco47I | GGWCC | 5 cut(s) | 82, 554, 1104, 1259, 1418 |
| Eco53kI | GAGCTC | 3 cut(s) | 40, 1305, 1540 |
| Eco57I | CTGAAG | 3 cut(s) | 684, 1461, 1515 |
| EcoICRI | GAGCTC | 3 cut(s) | 40, 1305, 1540 |
| EcoO109I | RGGNCCY | 2 cut(s) | 82, 1259 |
| EcoRII | CCWGG | 3 cut(s) | 840, 1028, 1788 |
| EcoRV | GATATC | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 1 cut(s) | 594 |
| EcoT22I | ATGCAT | 1 cut(s) | 1576 |
| EcoT38I | GRGCYC | 4 cut(s) | 42, 1307, 1542, 1982 |
| ErhI | CCWWGG | 1 cut(s) | 594 |
| FaeI | CATG | 3 cut(s) | 256, 1631, 2197 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1503, 1535 |
| FaqI | GGGAC | 4 cut(s) | 567, 1003, 1147, 1262 |
| FatI | CATG | 3 cut(s) | 252, 1627, 2193 |
| FauI | CCCGC | 2 cut(s) | 691, 943 |
| FbaI | TGATCA | 1 cut(s) | 619 |
| FblI | GTMKAC | 3 cut(s) | 15, 162, 1785 |
| Fnu4HI | GCNGC | 3 cut(s) | 261, 537, 1821 |
| FokI | GGATG | 7 cut(s) | 353, 446, 499, 836, 1448, 1708, 1778 |
| FriOI | GRGCYC | 4 cut(s) | 42, 1307, 1542, 1982 |
| Fsp4HI | GCNGC | 3 cut(s) | 261, 537, 1821 |
| FspBI | CTAG | 7 cut(s) | 324, 1089, 1311, 1383, 1413, 1749, 1872 |
| GlaI | GCGC | 2 cut(s) | 271, 507 |
| GluI | GCNGC | 3 cut(s) | 261, 537, 1821 |
| GsaI | CCCAGC | 1 cut(s) | 1683 |
| HaeIII | GGCC | 5 cut(s) | 260, 278, 635, 709, 1684 |
| HgaI | GACGC | 1 cut(s) | 1416 |
| HhaI | GCGC | 2 cut(s) | 272, 508 |
| Hin1I | GRCGYC | 1 cut(s) | 12 |
| Hin1II | CATG | 3 cut(s) | 256, 1631, 2197 |
| Hin6I | GCGC | 2 cut(s) | 270, 506 |
| HinP1I | GCGC | 2 cut(s) | 270, 506 |
| HincII | GTYRAC | 3 cut(s) | 16, 1501, 1786 |
| HindII | GTYRAC | 3 cut(s) | 16, 1501, 1786 |
| HindIII | AAGCTT | 1 cut(s) | 168 |
| HpaI | GTTAAC | 1 cut(s) | 1501 |
| HphI | GGTGA | 6 cut(s) | 713, 815, 965, 1013, 1064, 1961 |
| Hpy166II | GTNNAC | 6 cut(s) | 16, 163, 288, 1501, 1786, 2093 |
| Hpy188III | TCNNGA | 5 cut(s) | 24, 1568, 1669, 1725, 2128 |
| Hpy8I | GTNNAC | 6 cut(s) | 16, 163, 288, 1501, 1786, 2093 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 20 |
| HpyCH4III | ACNGT | 6 cut(s) | 133, 292, 631, 901, 1126, 1594 |
| HpyCH4IV | ACGT | 5 cut(s) | 12, 18, 795, 849, 1885 |
| HpyCH4V | TGCA | 9 cut(s) | 69, 521, 928, 1205, 1274, 1574, 1622, 1652, 1958 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 269, 514, 542, 641, 788, 833, 842, 1514 |
| HpyF3I | CTNAG | 9 cut(s) | 7, 282, 509, 1334, 1587, 1800, 1829, 2034, 2163 |
| HpySE526I | ACGT | 5 cut(s) | 12, 18, 795, 849, 1885 |
| Hsp92I | GRCGYC | 1 cut(s) | 12 |
| Hsp92II | CATG | 3 cut(s) | 256, 1631, 2197 |
| HspAI | GCGC | 2 cut(s) | 270, 506 |
| KpnI | GGTACC | 1 cut(s) | 1463 |
| Ksp22I | TGATCA | 1 cut(s) | 619 |
| KspAI | GTTAAC | 1 cut(s) | 1501 |
| LguI | GCTCTTC | 1 cut(s) | 1206 |
| Lsp1109I | GCAGC | 2 cut(s) | 548, 1807 |
| LweI | GCATC | 9 cut(s) | 331, 433, 493, 814, 937, 1426, 1561, 1807, 1945 |
| MaeI | CTAG | 7 cut(s) | 324, 1089, 1311, 1383, 1413, 1749, 1872 |
| MaeII | ACGT | 5 cut(s) | 12, 18, 795, 849, 1885 |
| MaeIII | GTNAC | 6 cut(s) | 701, 1001, 1045, 1052, 1152, 1552 |
| MfeI | CAATTG | 1 cut(s) | 1013 |
| MflI | RGATCY | 5 cut(s) | 959, 1181, 1330, 1598, 1616 |
| MhlI | GDGCHC | 6 cut(s) | 42, 138, 594, 1307, 1542, 1982 |
| MlsI | TGGCCA | 2 cut(s) | 278, 635 |
| MluNI | TGGCCA | 2 cut(s) | 278, 635 |
| MlyI | GAGTC | 4 cut(s) | 1049, 1256, 1811, 1913 |
| MmeI | TCCRAC | 3 cut(s) | 129, 846, 1690 |
| Mox20I | TGGCCA | 2 cut(s) | 278, 635 |
| Mph1103I | ATGCAT | 1 cut(s) | 1576 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1837 |
| MscI | TGGCCA | 2 cut(s) | 278, 635 |
| MseI | TTAA | 7 cut(s) | 984, 1128, 1500, 1521, 1577, 2049, 2081 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1632, 1734 |
| Msp20I | TGGCCA | 2 cut(s) | 278, 635 |
| MspA1I | CMGCKG | 1 cut(s) | 403 |
| MspCI | CTTAAG | 1 cut(s) | 2080 |
| MspR9I | CCNGG | 3 cut(s) | 842, 1030, 1790 |
| MunI | CAATTG | 1 cut(s) | 1013 |
| MvaI | CCWGG | 3 cut(s) | 842, 1030, 1790 |
| MvnI | CGCG | 3 cut(s) | 25, 57, 2142 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 269, 514, 542, 641, 788, 833, 842, 1514 |
| NlaIII | CATG | 3 cut(s) | 256, 1631, 2197 |
| NlaIV | GGNNCC | 5 cut(s) | 83, 398, 555, 1461, 1480 |
| NmuCI | GTSAC | 6 cut(s) | 701, 1001, 1045, 1052, 1152, 1552 |
| NruI | TCGCGA | 1 cut(s) | 25 |
| NsiI | ATGCAT | 1 cut(s) | 1576 |
| NspV | TTCGAA | 1 cut(s) | 2151 |
| PaqCI | CACCTGC | 1 cut(s) | 743 |
| PciSI | GCTCTTC | 1 cut(s) | 1206 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 203, 1313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1837 |
| PfeI | GAWTC | 6 cut(s) | 182, 248, 772, 1115, 1445, 1691 |
| PkrI | GCNGC | 3 cut(s) | 262, 538, 1822 |
| PleI | GAGTC | 4 cut(s) | 1049, 1255, 1810, 1913 |
| PpsI | GAGTC | 4 cut(s) | 1049, 1255, 1810, 1913 |
| PpuMI | RGGWCCY | 2 cut(s) | 82, 1259 |
| Psp124BI | GAGCTC | 3 cut(s) | 42, 1307, 1542 |
| Psp5II | RGGWCCY | 2 cut(s) | 82, 1259 |
| Psp6I | CCWGG | 3 cut(s) | 840, 1028, 1788 |
| PspFI | CCCAGC | 1 cut(s) | 1679 |
| PspGI | CCWGG | 3 cut(s) | 840, 1028, 1788 |
| PspN4I | GGNNCC | 5 cut(s) | 83, 398, 555, 1461, 1480 |
| PspPI | GGNCC | 7 cut(s) | 82, 554, 707, 1104, 1259, 1418, 1682 |
| PspPPI | RGGWCCY | 2 cut(s) | 82, 1259 |
| PsuI | RGATCY | 5 cut(s) | 959, 1181, 1330, 1598, 1616 |
| PvuII | CAGCTG | 1 cut(s) | 403 |
| RruI | TCGCGA | 1 cut(s) | 25 |
| RsaI | GTAC | 9 cut(s) | 289, 335, 723, 1461, 1770, 1894, 1903, 2015, 2094 |
| RsaNI | GTAC | 9 cut(s) | 288, 334, 722, 1460, 1769, 1893, 1902, 2014, 2093 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1632, 1734 |
| SacI | GAGCTC | 3 cut(s) | 42, 1307, 1542 |
| SalI | GTCGAC | 2 cut(s) | 14, 1784 |
| SapI | GCTCTTC | 1 cut(s) | 1206 |
| SaqAI | TTAA | 7 cut(s) | 984, 1128, 1500, 1521, 1577, 2049, 2081 |
| SatI | GCNGC | 3 cut(s) | 261, 537, 1821 |
| Sau96I | GGNCC | 7 cut(s) | 82, 554, 707, 1104, 1259, 1418, 1682 |
| ScaI | AGTACT | 2 cut(s) | 335, 1894 |
| SchI | GAGTC | 4 cut(s) | 1049, 1256, 1811, 1913 |
| ScrFI | CCNGG | 3 cut(s) | 842, 1030, 1790 |
| SduI | GDGCHC | 6 cut(s) | 42, 138, 594, 1307, 1542, 1982 |
| SfaNI | GCATC | 9 cut(s) | 331, 433, 493, 814, 937, 1426, 1561, 1807, 1945 |
| SfuI | TTCGAA | 1 cut(s) | 2151 |
| SgrDI | CGTCGACG | 1 cut(s) | 14 |
| SinI | GGWCC | 5 cut(s) | 82, 554, 1104, 1259, 1418 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1632, 1734 |
| SmlI | CTYRAG | 1 cut(s) | 2080 |
| SmoI | CTYRAG | 1 cut(s) | 2080 |
| SsiI | CCGC | 7 cut(s) | 55, 261, 413, 557, 698, 950, 2140 |
| SspMI | CTAG | 7 cut(s) | 324, 1089, 1311, 1383, 1413, 1749, 1872 |
| SstI | GAGCTC | 3 cut(s) | 42, 1307, 1542 |
| StyD4I | CCNGG | 3 cut(s) | 840, 1028, 1788 |
| StyI | CCWWGG | 1 cut(s) | 594 |
| TaaI | ACNGT | 6 cut(s) | 133, 292, 631, 901, 1126, 1594 |
| TaiI | ACGT | 5 cut(s) | 15, 21, 798, 852, 1888 |
| TaqII | GACCGA | 3 cut(s) | 163, 900, 1140 |
| TatI | WGTACW | 3 cut(s) | 333, 1892, 2092 |
| TauI | GCSGC | 1 cut(s) | 263 |
| TfiI | GAWTC | 6 cut(s) | 182, 248, 772, 1115, 1445, 1691 |
| Tru1I | TTAA | 7 cut(s) | 984, 1128, 1500, 1521, 1577, 2049, 2081 |
| Tru9I | TTAA | 7 cut(s) | 984, 1128, 1500, 1521, 1577, 2049, 2081 |
| TscAI | CASTG | 4 cut(s) | 286, 636, 1617, 1804 |
| TseFI | GTSAC | 6 cut(s) | 701, 1001, 1045, 1052, 1152, 1552 |
| TseI | GCWGC | 2 cut(s) | 536, 1820 |
| Tsp45I | GTSAC | 6 cut(s) | 701, 1001, 1045, 1052, 1152, 1552 |
| TspDTI | ATGAA | 2 cut(s) | 269, 503 |
| TspGWI | ACGGA | 2 cut(s) | 260, 899 |
| TspRI | CASTG | 4 cut(s) | 286, 636, 1617, 1804 |
| Vha464I | CTTAAG | 1 cut(s) | 2080 |
| VpaK11BI | GGWCC | 5 cut(s) | 82, 554, 1104, 1259, 1418 |
| XapI | RAATTY | 2 cut(s) | 1234, 1472 |
| XmiI | GTMKAC | 3 cut(s) | 15, 162, 1785 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1837 |
| XspI | CTAG | 7 cut(s) | 324, 1089, 1311, 1383, 1413, 1749, 1872 |
| ZraI | GACGTC | 1 cut(s) | 13 |
| ZrmI | AGTACT | 2 cut(s) | 335, 1894 |
| Zsp2I | ATGCAT | 1 cut(s) | 1576 |