RchiOBHm_Chr7g0221531
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000851
Physical Location & Seq
Reverse (-)
42556673 .. 42559070
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19824

Sequence Viewer

Length: 897 bp
ATGGGTCTGATTTGGACTGGGGTGGAGGTGCCATTGACAAAAGGGGCTGATTTGGGTGTTGGGAAAGAGTTGAATGGGCAAAGGGAAAATGGGGCTAATGTTAGTGATGGGTATGGAGTAAAGGCGCGAAGGGTGAATGGAGCTAATGTTGGTGGTGATAGTTCTAAATGGGAAGCGCGGCGAGTGGAAAATGATACTAATGTGGGTGATATGACTGTGGCTTTTTCCAAGTTTGGGTCTCTGTTGGGTTACCATTCTATGGACGGTGTTTTGCGGGTAGTGGAGGAAGGGACGTCACCGCTTAATGTGAACTGTGGTGTCCTCAGTTTTGAACCTGCAAGAAAAGAGAAAGAAATTCCAAGGAACAGGGCACTTAGGCATGGACCACTTAAGATTAGAGATGCTGAATATATCGGCACAGATGCATCAGATGGCATACATAATTACGTATCCAGCACTGAAGTTAGAAAAGTGCAAGAACAACTTAAGTCCAGTGTTATGGCTGTACAATCTGTAGTGACAGACCCACTACTTTATAATTTGCGCGTGCCGGAAATTGTAAGATCTGAGGTGGAAGTCAATCATGTAAATGGAGAAGATGGTACAAAAAATCCATCTATTGAAAAGACCACTGGGCCTGATCATTCTAATAGTGATACTAATGGAAATCCGACCTCCAGTGATCAGAACGATGTGCCCCAAGCTCCTGGAAAAGAAAATGATGCATCCAACCTGTCCGTTGAGAAGGGAAAGGGCACAGAGTATGTTCGAAGTGGTGATCCCAACCGTGCAGATCTGTGTTGCAGTAATCAGAATAGTGGTCCTCGACCAGGGTTGATGGAACGTAATAGTACTGCCCATACTTACAAGTGGGATGACTCGCTAGGTATCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

298

Amino Acids

32.15

Weight (kDa)

5.38

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AatII GACGTC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 259
AccII CGCG 3 cut(s) 127, 178, 546
AciI CCGC 3 cut(s) 178, 274, 299
AclWI GGATC 1 cut(s) 773
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 3 cut(s) 507, 604, 853
AfiI CCNNNNNNNGG 3 cut(s) 234, 259, 830
AflII CTTAAG 2 cut(s) 389, 485
AgsI TTSAA 3 cut(s) 73, 332, 623
AjnI CCWGG 2 cut(s) 706, 829
AluBI AGCT 2 cut(s) 143, 704
AluI AGCT 2 cut(s) 143, 704
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 773
AoxI GGCC 1 cut(s) 635
ApoI RAATTY 1 cut(s) 354
AspLEI GCGC 3 cut(s) 127, 178, 546
AspS9I GGNCC 3 cut(s) 383, 635, 821
AsuHPI GGTGA 6 cut(s) 145, 167, 218, 288, 788, 883
AsuII TTCGAA 1 cut(s) 769
AvaII GGWCC 2 cut(s) 383, 821
BaeGI GKGCMC 3 cut(s) 373, 699, 758
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BanI GGYRCC 1 cut(s) 28
BccI CCATC 5 cut(s) 101, 425, 593, 622, 832
BciT130I CCWGG 2 cut(s) 708, 831
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 2 cut(s) 640, 682
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 1 cut(s) 513
BfrI CTTAAG 2 cut(s) 389, 485
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 460
BglII AGATCT 2 cut(s) 563, 793
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmcAI AGTACT 1 cut(s) 853
Bme1390I CCNGG 2 cut(s) 708, 831
Bme18I GGWCC 2 cut(s) 383, 821
BmgT120I GGNCC 3 cut(s) 383, 635, 821
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 708, 831
BmrI ACTGGG 2 cut(s) 27, 642
BmsI GCATC 5 cut(s) 391, 412, 434, 712, 734
BmuI ACTGGG 2 cut(s) 27, 642
BpmI CTGGAG 1 cut(s) 661
Bpu14I TTCGAA 1 cut(s) 769
BsaAI YACGTR 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 359, 830
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 259, 830
Bse1I ACTGG 4 cut(s) 22, 492, 637, 678
BseBI CCWGG 2 cut(s) 708, 831
BseDI CCNNGG 2 cut(s) 359, 830
BseGI GGATG 2 cut(s) 725, 880
BseLI CCNNNNNNNGG 3 cut(s) 234, 259, 830
BseMII CTCAG 2 cut(s) 337, 558
BseNI ACTGG 4 cut(s) 22, 492, 637, 678
BseSI GKGCMC 3 cut(s) 373, 699, 758
BsgI GTGCAG 1 cut(s) 810
Bsh1236I CGCG 3 cut(s) 127, 178, 546
BshFI GGCC 1 cut(s) 637
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 3 cut(s) 234, 259, 830
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 637
Bso31I GGTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 769
Bsp1286I GDGCHC 3 cut(s) 373, 699, 758
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 5 cut(s) 563, 640, 682, 778, 793
BspACI CCGC 3 cut(s) 178, 274, 299
BspANI GGCC 1 cut(s) 637
BspCNI CTCAG 2 cut(s) 336, 559
BspFNI CGCG 3 cut(s) 127, 178, 546
BspLI GGNNCC 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 773
BspT104I TTCGAA 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 28
BspTI CTTAAG 2 cut(s) 389, 485
BspTNI GGTCTC 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 4 cut(s) 22, 492, 637, 678
BssECI CCNNGG 2 cut(s) 359, 830
BssMI GATC 5 cut(s) 563, 640, 682, 778, 793
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 708, 831
Bst4CI ACNGT 4 cut(s) 217, 266, 314, 788
BstACI GRCGYC 1 cut(s) 293
BstAFI CTTAAG 2 cut(s) 389, 485
BstAUI TGTACA 1 cut(s) 505
BstBAI YACGTR 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 548
BstDEI CTNAG 3 cut(s) 323, 374, 567
BstEII GGTNACC 1 cut(s) 248
BstENI CCTNNNNNAGG 1 cut(s) 828
BstF5I GGATG 2 cut(s) 725, 880
BstFNI CGCG 3 cut(s) 127, 178, 546
BstHHI GCGC 3 cut(s) 127, 178, 546
BstKTI GATC 5 cut(s) 566, 643, 685, 781, 796
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 5 cut(s) 563, 640, 682, 778, 793
BstNI CCWGG 2 cut(s) 708, 831
BstPI GGTNACC 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 706, 829
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 3 cut(s) 373, 699, 758
BstSNI TACGTA 1 cut(s) 448
BstUI CGCG 3 cut(s) 127, 178, 546
BstX2I RGATCY 2 cut(s) 563, 793
BstXI CCANNNNNNTGG 2 cut(s) 499, 707
BstYI RGATCY 2 cut(s) 563, 793
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 637
BtsCI GGATG 2 cut(s) 725, 880
BtsIMutI CAGTG 4 cut(s) 456, 499, 630, 685
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 548
CfoI GCGC 3 cut(s) 127, 178, 546
Cfr13I GGNCC 3 cut(s) 383, 635, 821
Csp6I GTAC 3 cut(s) 506, 603, 852
CviAII CATG 2 cut(s) 380, 584
CviJI RGCY 7 cut(s) 47, 95, 143, 221, 503, 637, 704
CviKI_1 RGCY 7 cut(s) 47, 95, 143, 221, 503, 637, 704
CviQI GTAC 3 cut(s) 506, 603, 852
DdeI CTNAG 3 cut(s) 323, 374, 567
DpnI GATC 5 cut(s) 565, 642, 684, 780, 795
DpnII GATC 5 cut(s) 563, 640, 682, 778, 793
Eco105I TACGTA 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 383, 821
Eco57I CTGAAG 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 248
EcoNI CCTNNNNNAGG 1 cut(s) 828
EcoO65I GGTNACC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 706, 829
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 2 cut(s) 427, 727
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 383, 587
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 304
FatI CATG 2 cut(s) 379, 583
FauI CCCGC 1 cut(s) 267
FbaI TGATCA 2 cut(s) 640, 682
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 2 cut(s) 712, 887
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 884
GlaI GCGC 3 cut(s) 126, 177, 545
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 661
HaeIII GGCC 1 cut(s) 637
HapII CCGG 1 cut(s) 551
HhaI GCGC 3 cut(s) 127, 178, 546
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 2 cut(s) 383, 587
Hin6I GCGC 3 cut(s) 125, 176, 544
HinP1I GCGC 3 cut(s) 125, 176, 544
HinfI GANTC 1 cut(s) 878
HpaII CCGG 1 cut(s) 551
HphI GGTGA 6 cut(s) 145, 167, 218, 288, 788, 883
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 6 cut(s) 9, 430, 568, 672, 687, 813
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 3 cut(s) 123, 281, 739
HpyCH4III ACNGT 4 cut(s) 217, 266, 314, 788
HpyCH4IV ACGT 3 cut(s) 293, 447, 844
HpyCH4V TGCA 6 cut(s) 338, 425, 475, 725, 791, 804
HpyF3I CTNAG 3 cut(s) 323, 374, 567
HpySE526I ACGT 3 cut(s) 293, 447, 844
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 2 cut(s) 383, 587
HspAI GCGC 3 cut(s) 125, 176, 544
Ksp22I TGATCA 2 cut(s) 640, 682
Kzo9I GATC 5 cut(s) 563, 640, 682, 778, 793
LmnI GCTCC 2 cut(s) 140, 709
LweI GCATC 5 cut(s) 391, 412, 434, 712, 734
MaeI CTAG 1 cut(s) 884
MaeII ACGT 3 cut(s) 293, 447, 844
MaeIII GTNAC 3 cut(s) 248, 294, 517
MalI GATC 5 cut(s) 565, 642, 684, 780, 795
MboI GATC 5 cut(s) 563, 640, 682, 778, 793
MboII GAAGA 1 cut(s) 608
MflI RGATCY 2 cut(s) 563, 793
MhlI GDGCHC 3 cut(s) 373, 699, 758
MluCI AATT 4 cut(s) 354, 442, 538, 555
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 2 cut(s) 695, 753
MnlI CCTC 6 cut(s) 19, 277, 332, 562, 685, 834
Mph1103I ATGCAT 2 cut(s) 427, 727
MseI TTAA 3 cut(s) 303, 390, 486
MslI CAYNNNNRTG 1 cut(s) 588
MspCI CTTAAG 2 cut(s) 389, 485
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 708, 831
MvaI CCWGG 2 cut(s) 708, 831
MvnI CGCG 3 cut(s) 127, 178, 546
NdeII GATC 5 cut(s) 563, 640, 682, 778, 793
NlaIII CATG 2 cut(s) 383, 587
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 294, 517
NsiI ATGCAT 2 cut(s) 427, 727
NspV TTCGAA 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
Ppu21I YACGTR 1 cut(s) 448
PsiI TTATAA 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 706, 829
PspEI GGTNACC 1 cut(s) 248
PspGI CCWGG 2 cut(s) 706, 829
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 3 cut(s) 383, 635, 821
PsuI RGATCY 2 cut(s) 563, 793
RsaI GTAC 3 cut(s) 507, 604, 853
RsaNI GTAC 3 cut(s) 506, 603, 852
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 3 cut(s) 303, 390, 486
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 5 cut(s) 563, 640, 682, 778, 793
Sau96I GGNCC 3 cut(s) 383, 635, 821
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 708, 831
SduI GDGCHC 3 cut(s) 373, 699, 758
SfaNI GCATC 5 cut(s) 391, 412, 434, 712, 734
SfcI CTRYAG 1 cut(s) 513
SfuI TTCGAA 1 cut(s) 769
SinI GGWCC 2 cut(s) 383, 821
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 389, 485
SmoI CTYRAG 2 cut(s) 389, 485
SnaBI TACGTA 1 cut(s) 448
Sse9I AATT 4 cut(s) 354, 442, 538, 555
SsiI CCGC 3 cut(s) 178, 274, 299
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 706, 829
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 4 cut(s) 217, 266, 314, 788
TaiI ACGT 3 cut(s) 296, 450, 847
TaqI TCGA 2 cut(s) 769, 826
TasI AATT 4 cut(s) 354, 442, 538, 555
TatI WGTACW 2 cut(s) 505, 851
TauI GCSGC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 303, 390, 486
Tru9I TTAA 3 cut(s) 303, 390, 486
TscAI CASTG 4 cut(s) 463, 499, 637, 685
TseFI GTSAC 2 cut(s) 294, 517
Tsp45I GTSAC 2 cut(s) 294, 517
TspGWI ACGGA 1 cut(s) 727
TspRI CASTG 4 cut(s) 463, 499, 637, 685
Van91I CCANNNNNTGG 1 cut(s) 259
Vha464I CTTAAG 2 cut(s) 389, 485
VpaK11BI GGWCC 2 cut(s) 383, 821
XagI CCTNNNNNAGG 1 cut(s) 828
XapI RAATTY 1 cut(s) 354
XspI CTAG 1 cut(s) 884
ZraI GACGTC 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 853
Zsp2I ATGCAT 2 cut(s) 427, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.