AT1G11360

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001958
Physical Location & Seq
Reverse (-)
3821106 .. 3823088
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11360.4

Sequence Viewer

Length: 729 bp
ATGACTTCTCCGGGAAAATCTCCGAGATCCGACCGGAAATCACCGACGGTTGTCACCGTCCAGCCGTCTTCTCCCAGATTCCCGATCAGCACACCTACTGCTGGAGCTCAACGTAAGATCGGGATCGCTGTCGATCTAAGCGACGAGAGTGCGTACGCAGTTCAATGGGCTGTTCAGAACTATCTCCGATCAGGTGACGCCGTTGTTCTCCTTCATGTTCAACCGACGAGTGTACTTTACGGCGCCGATTGGGGCGCTATGGATTTGTCGCCGCAGTGGGATCCAAATAACGAAGAGTCGCAGAGGAAGCTTGAGGACGATTTCGACATTGTCACTAATAAGAAAGCGAGCGACGTTGCTCAGCCTTTGGTTGAGGCGGATATTCCGTTTAAGATCCATATCGTCAAGGATCACGATATGAAGGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGCTAAGTACTTTGATTATGGGTAGTAGAGGATTTGGTGCTACGAAGAGGAGTAGTAAAGGGAGATTAGGGAGTGTCAGTGATTACTCAGTTCACCATTGTGCTTGTCCGGTGGTTGTTGTTAGATTTCCTGATGATAAGGATGGAGAAGATGAGAAATCCGGCGACAGTGGTGGGGAGAATCTGATGGACAGTGATAAACTTCATACAGTGCCTGAGGTGGCTGAAGAAGAGGGAGATAAGGATGAGTACCATGATGCTTCGGATAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

242

Amino Acids

26.51

Weight (kDa)

4.89

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 38 - 193 8e-27 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 2 cut(s) 272, 377
AclWI GGATC 6 cut(s) 21, 131, 275, 288, 388, 417
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 2 cut(s) 198, 243
AfaI GTAC 4 cut(s) 155, 234, 463, 704
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 164, 221
AleI CACNNNNGTG 1 cut(s) 552
AluBI AGCT 2 cut(s) 107, 310
AluI AGCT 2 cut(s) 107, 310
Alw21I GWGCWC 1 cut(s) 109
AlwI GGATC 6 cut(s) 21, 131, 275, 288, 388, 417
AlwNI CAGNNNCTG 1 cut(s) 668
AspLEI GCGC 2 cut(s) 245, 257
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 33, 46, 206, 539
AxyI CCTNAGG 1 cut(s) 669
BamHI GGATCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 2 cut(s) 590, 634
BceAI ACGGC 3 cut(s) 49, 185, 256
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BcnI CCSGG 1 cut(s) 12
BfoI RGCGCY 2 cut(s) 246, 258
BisI GCNGC 1 cut(s) 272
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 244, 282
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 700
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 12
BsaBI GATNNNNATC 2 cut(s) 122, 398
BsaHI GRCGYC 2 cut(s) 198, 243
BsaWI WCCGGW 2 cut(s) 33, 562
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 669
Bse8I GATNNNNATC 2 cut(s) 122, 398
BseGI GGATG 2 cut(s) 601, 703
BseJI GATNNNNATC 2 cut(s) 122, 398
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 3 cut(s) 374, 555, 660
BseRI GAGGAG 1 cut(s) 517
Bsh1285I CGRYCG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 4 cut(s) 11, 34, 563, 615
BsiWI CGTACG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 2 cut(s) 272, 377
BspCNI CTCAG 3 cut(s) 373, 554, 661
BspLI GGNNCC 2 cut(s) 244, 282
BspPI GGATC 6 cut(s) 21, 131, 275, 288, 388, 417
BspT107I GGYRCC 1 cut(s) 242
BssMI GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
BssNI GRCGYC 2 cut(s) 198, 243
Bst4CI ACNGT 5 cut(s) 49, 58, 623, 647, 664
Bst6I CTCTTC 3 cut(s) 288, 494, 678
BstACI GRCGYC 2 cut(s) 198, 243
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 5 cut(s) 137, 360, 458, 541, 669
BstF5I GGATG 2 cut(s) 601, 703
BstH2I RGCGCY 2 cut(s) 246, 258
BstHHI GCGC 2 cut(s) 245, 257
BstKTI GATC 9 cut(s) 29, 87, 120, 126, 136, 191, 283, 396, 412
BstMBI GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 3 cut(s) 26, 280, 393
BstYI RGATCY 3 cut(s) 26, 280, 393
Bsu36I CCTNAGG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 601, 703
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 5 cut(s) 281, 538, 628, 652, 669
Cac8I GCNNGC 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 2 cut(s) 245, 257
CseI GACGC 1 cut(s) 206
Csp6I GTAC 4 cut(s) 154, 233, 462, 703
CviAII CATG 2 cut(s) 215, 707
CviJI RGCY 8 cut(s) 64, 107, 170, 310, 364, 430, 457, 677
CviKI_1 RGCY 8 cut(s) 64, 107, 170, 310, 364, 430, 457, 677
CviQI GTAC 4 cut(s) 154, 233, 462, 703
DdeI CTNAG 5 cut(s) 137, 360, 458, 541, 669
DinI GGCGCC 1 cut(s) 244
DpnI GATC 9 cut(s) 28, 86, 119, 125, 135, 190, 282, 395, 411
DpnII GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
Eam1104I CTCTTC 3 cut(s) 288, 494, 678
EarI CTCTTC 3 cut(s) 288, 494, 678
EciI GGCGGA 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 699
Eco81I CCTNAGG 1 cut(s) 669
EcoICRI GAGCTC 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 109
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
FaeI CATG 2 cut(s) 218, 710
FaiI YATR 7 cut(s) 216, 260, 399, 419, 473, 660, 708
FatI CATG 2 cut(s) 214, 706
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 608, 710
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 272
GlaI GCGC 2 cut(s) 244, 256
GluI GCNGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 2 cut(s) 246, 258
HapII CCGG 4 cut(s) 11, 34, 563, 615
HgaI GACGC 1 cut(s) 206
HhaI GCGC 2 cut(s) 245, 257
Hin1I GRCGYC 2 cut(s) 198, 243
Hin1II CATG 2 cut(s) 218, 710
Hin6I GCGC 2 cut(s) 243, 255
HinP1I GCGC 2 cut(s) 243, 255
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 3 cut(s) 78, 296, 634
HpaII CCGG 4 cut(s) 11, 34, 563, 615
HphI GGTGA 4 cut(s) 33, 46, 206, 539
Hpy166II GTNNAC 2 cut(s) 233, 547
Hpy188I TCNGA 6 cut(s) 24, 31, 177, 188, 639, 718
Hpy188III TCNNGA 4 cut(s) 82, 121, 413, 584
Hpy8I GTNNAC 2 cut(s) 233, 547
Hpy99I CGWCG 4 cut(s) 49, 146, 229, 356
HpyAV CCTTC 2 cut(s) 221, 415
HpyCH4III ACNGT 5 cut(s) 49, 58, 623, 647, 664
HpyCH4IV ACGT 2 cut(s) 112, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 5 cut(s) 137, 360, 458, 541, 669
HpySE526I ACGT 2 cut(s) 112, 354
Hsp92I GRCGYC 2 cut(s) 198, 243
Hsp92II CATG 2 cut(s) 218, 710
HspAI GCGC 2 cut(s) 243, 255
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
LmnI GCTCC 1 cut(s) 104
LweI GCATC 1 cut(s) 700
MaeII ACGT 2 cut(s) 112, 354
MaeIII GTNAC 3 cut(s) 52, 194, 331
MalI GATC 9 cut(s) 28, 86, 119, 125, 135, 190, 282, 395, 411
MboI GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
MboII GAAGA 6 cut(s) 60, 305, 511, 614, 692, 695
MflI RGATCY 3 cut(s) 26, 280, 393
MhlI GDGCHC 1 cut(s) 109
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 54
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 4 cut(s) 11, 34, 563, 615
MspR9I CCNGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 307
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 1 cut(s) 12
NdeII GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
NlaIII CATG 2 cut(s) 218, 710
NlaIV GGNNCC 2 cut(s) 244, 282
NmuCI GTSAC 3 cut(s) 52, 194, 331
OliI CACNNNNGTG 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 78, 634
Pfl23II CGTACG 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 1 cut(s) 304
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 304
PshAI GACNNNNGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 109
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 244, 282
PstNI CAGNNNCTG 1 cut(s) 668
PsuI RGATCY 3 cut(s) 26, 280, 393
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 4 cut(s) 155, 234, 463, 704
RsaNI GTAC 4 cut(s) 154, 233, 462, 703
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 9 cut(s) 26, 84, 117, 123, 133, 188, 280, 393, 409
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 109
SetI ASST 9 cut(s) 97, 109, 115, 196, 312, 357, 444, 452, 675
SfaNI GCATC 1 cut(s) 700
SfoI GGCGCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SsiI CCGC 2 cut(s) 272, 377
SspDI GGCGCC 1 cut(s) 242
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 5 cut(s) 49, 58, 623, 647, 664
TaiI ACGT 2 cut(s) 115, 357
TaqI TCGA 2 cut(s) 132, 324
TatI WGTACW 2 cut(s) 232, 461
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 2 cut(s) 78, 634
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 5 cut(s) 281, 538, 628, 652, 669
TseFI GTSAC 3 cut(s) 52, 194, 331
Tsp45I GTSAC 3 cut(s) 52, 194, 331
TspDTI ATGAA 3 cut(s) 203, 434, 647
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 5 cut(s) 281, 538, 628, 652, 669
Tth111I GACNNNGTC 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.