Rmu_co8321989.1_g000001

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8321989.1
OG0001958
Physical Location & Seq
Reverse (-)
123 .. 869
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8321989.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
atggcttctccgaagaagagcccatcatcttcagaaccagagcgtcagcactccggctcggcgatcgtagtccaaccctcctcccctcgcttccctcccagcggcacccccacctctggcgcccagcgccgcatcgggatcgccgtcgatctcagcgacgagagcgccttcgccgtcaagtgggccgtccaaaactacctccgccccggcgacgccgtcgtcctcctccacgtccgccccaccagcgtcctctacggcgccgactggggcgccaccgacgtctccatccccaacgacgaggcctcccagcagaagctcgagtccgatttcgacaacttcaccatcaccaaagccaccgacgtctccaagcctctcgaggaggctcggatcccctacaagatccacatagtgaaggaccacgatatgaaggagcgtctctgcttggaggtcgagcgcctcggcctggtcgccgtcattatgggcagccgggggttcggagccaccaagcggagctccaacgccaggctcggtagtgttagtgactactgtgtgcaccactgcgtctgtccggtcatcgtcgttaggttttccgatgacaaggacggagacggagacgacgtcgtaaagccggcgaggtttgactctgttcacggggacgagccggagttccatgacgctttggataaaggtcagcattatacttgcttttcgtttcgattttcggcttccggttttagtattagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

248

Amino Acids

27.05

Weight (kDa)

5.84

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 3 cut(s) 282, 363, 621
AccB1I GGYRCC 4 cut(s) 104, 119, 257, 269
AciI CCGC 5 cut(s) 102, 130, 202, 235, 508
AclWI GGATC 4 cut(s) 146, 382, 394, 395
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 7 cut(s) 120, 213, 258, 270, 279, 360, 618
AdeI CACNNNGTG 1 cut(s) 409
AfiI CCNNNNNNNGG 6 cut(s) 101, 116, 180, 463, 507, 522
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 462, 521
AluBI AGCT 2 cut(s) 316, 513
AluI AGCT 2 cut(s) 316, 513
Alw21I GWGCWC 2 cut(s) 515, 555
Alw26I GTCTC 5 cut(s) 286, 367, 440, 600, 606
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 4 cut(s) 146, 382, 394, 395
Ama87I CYCGRG 2 cut(s) 317, 374
AoxI GGCC 3 cut(s) 183, 300, 460
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 483
AspLEI GCGC 6 cut(s) 122, 129, 167, 260, 272, 456
AspS9I GGNCC 2 cut(s) 183, 415
AsuC2I CCSGG 2 cut(s) 207, 488
AsuHPI GGTGA 2 cut(s) 331, 337
AvaI CYCGRG 2 cut(s) 317, 374
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 555
BamHI GGATCC 1 cut(s) 387
BanI GGYRCC 4 cut(s) 104, 119, 257, 269
BanII GRGCYC 2 cut(s) 23, 515
Bbv12I GWGCWC 2 cut(s) 515, 555
BbvI GCAGC 1 cut(s) 495
BccI CCATC 3 cut(s) 31, 293, 350
BceAI ACGGC 6 cut(s) 128, 158, 170, 200, 271, 455
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 2 cut(s) 464, 523
BcnI CCSGG 2 cut(s) 207, 488
BcoDI GTCTC 5 cut(s) 286, 367, 440, 600, 606
BfoI RGCGCY 6 cut(s) 123, 130, 168, 261, 273, 457
BisI GCNGC 3 cut(s) 103, 130, 484
BlsI GCNGC 3 cut(s) 104, 131, 485
Bme1390I CCNGG 4 cut(s) 207, 464, 488, 523
Bme18I GGWCC 1 cut(s) 415
BmeT110I CYCGRG 2 cut(s) 317, 374
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 183, 415
BmiI GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
BmrFI CCNGG 4 cut(s) 207, 464, 488, 523
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 274
BpuMI CCSGG 2 cut(s) 207, 488
BsaHI GRCGYC 7 cut(s) 120, 213, 258, 270, 279, 360, 618
BsaJI CCNNGG 3 cut(s) 205, 457, 487
BsaWI WCCGGW 2 cut(s) 568, 728
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 603, 633
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 116, 180, 463, 507, 522
Bse118I RCCGGY 1 cut(s) 628
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 464, 523
BseDI CCNNGG 3 cut(s) 205, 457, 487
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 6 cut(s) 101, 116, 180, 463, 507, 522
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 70, 215, 392
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 3 cut(s) 98, 123, 306
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 185, 302, 462
BshNI GGYRCC 4 cut(s) 104, 119, 257, 269
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 515, 555
BsiHKCI CYCGRG 2 cut(s) 317, 374
BsiSI CCGG 7 cut(s) 54, 207, 487, 569, 629, 662, 729
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 6 cut(s) 101, 116, 180, 463, 507, 522
BsmAI GTCTC 5 cut(s) 286, 367, 440, 600, 606
BsmBI CGTCTC 5 cut(s) 286, 367, 440, 600, 606
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 3 cut(s) 185, 302, 462
BsoBI CYCGRG 2 cut(s) 317, 374
Bsp1286I GDGCHC 3 cut(s) 23, 515, 555
Bsp143I GATC 5 cut(s) 63, 138, 148, 387, 399
BspACI CCGC 5 cut(s) 102, 130, 202, 235, 508
BspANI GGCC 3 cut(s) 185, 302, 462
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
BspPI GGATC 4 cut(s) 146, 382, 394, 395
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 4 cut(s) 104, 119, 257, 269
BsrFI RCCGGY 1 cut(s) 628
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 3 cut(s) 205, 457, 487
BssMI GATC 5 cut(s) 63, 138, 148, 387, 399
BssNI GRCGYC 7 cut(s) 120, 213, 258, 270, 279, 360, 618
Bst2UI CCWGG 2 cut(s) 464, 523
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 7 cut(s) 120, 213, 258, 270, 279, 360, 618
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 285
BstH2I RGCGCY 6 cut(s) 123, 130, 168, 261, 273, 457
BstHHI GCGC 6 cut(s) 122, 129, 167, 260, 272, 456
BstKTI GATC 5 cut(s) 66, 141, 151, 390, 402
BstMAI GTCTC 5 cut(s) 286, 367, 440, 600, 606
BstMBI GATC 5 cut(s) 63, 138, 148, 387, 399
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 126, 162, 243
BstNI CCWGG 2 cut(s) 464, 523
BstSCI CCNGG 4 cut(s) 205, 462, 486, 521
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 387, 399
BstYI RGATCY 2 cut(s) 387, 399
BsuRI GGCC 3 cut(s) 185, 302, 462
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 630
CfoI GCGC 6 cut(s) 122, 129, 167, 260, 272, 456
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 2 cut(s) 183, 415
CseI GACGC 6 cut(s) 32, 221, 235, 422, 550, 683
CviAII CATG 1 cut(s) 671
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 3 cut(s) 121, 259, 271
DpnI GATC 5 cut(s) 65, 140, 150, 389, 401
DpnII GATC 5 cut(s) 63, 138, 148, 387, 399
DraIII CACNNNGTG 1 cut(s) 409
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 2 cut(s) 191, 224
Ecl136II GAGCTC 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 23, 515
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 2 cut(s) 317, 374
EcoICRI GAGCTC 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 462, 521
EcoT38I GRGCYC 2 cut(s) 23, 515
EgeI GGCGCC 3 cut(s) 121, 259, 271
EheI GGCGCC 3 cut(s) 121, 259, 271
Esp3I CGTCTC 5 cut(s) 286, 367, 440, 600, 606
FaeI CATG 1 cut(s) 674
FaiI YATR 5 cut(s) 407, 425, 479, 672, 699
FaqI GGGAC 1 cut(s) 668
FatI CATG 1 cut(s) 670
Fnu4HI GCNGC 3 cut(s) 103, 130, 484
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 2 cut(s) 23, 515
Fsp4HI GCNGC 3 cut(s) 103, 130, 484
GlaI GCGC 6 cut(s) 121, 128, 166, 259, 271, 455
GluI GCNGC 3 cut(s) 103, 130, 484
GsaI CCCAGC 3 cut(s) 102, 127, 310
HaeII RGCGCY 6 cut(s) 123, 130, 168, 261, 273, 457
HaeIII GGCC 3 cut(s) 185, 302, 462
HapII CCGG 7 cut(s) 54, 207, 487, 569, 629, 662, 729
HgaI GACGC 6 cut(s) 32, 221, 235, 422, 550, 683
HhaI GCGC 6 cut(s) 122, 129, 167, 260, 272, 456
Hin1I GRCGYC 7 cut(s) 120, 213, 258, 270, 279, 360, 618
Hin1II CATG 1 cut(s) 674
Hin6I GCGC 6 cut(s) 120, 127, 165, 258, 270, 454
HinP1I GCGC 6 cut(s) 120, 127, 165, 258, 270, 454
HinfI GANTC 2 cut(s) 320, 641
HpaII CCGG 7 cut(s) 54, 207, 487, 569, 629, 662, 729
HphI GGTGA 2 cut(s) 331, 337
Hpy166II GTNNAC 2 cut(s) 553, 649
Hpy188I TCNGA 6 cut(s) 12, 34, 325, 387, 497, 592
Hpy188III TCNNGA 2 cut(s) 136, 374
Hpy8I GTNNAC 2 cut(s) 553, 649
HpyAV CCTTC 3 cut(s) 178, 406, 421
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 4 cut(s) 231, 279, 360, 618
HpyCH4V TGCA 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 162, 243
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 4 cut(s) 231, 279, 360, 618
Hsp92I GRCGYC 7 cut(s) 120, 213, 258, 270, 279, 360, 618
Hsp92II CATG 1 cut(s) 674
HspAI GCGC 6 cut(s) 120, 127, 165, 258, 270, 454
KasI GGCGCC 3 cut(s) 119, 257, 269
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 5 cut(s) 63, 138, 148, 387, 399
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 4 cut(s) 430, 497, 510, 518
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 141
MaeII ACGT 4 cut(s) 231, 279, 360, 618
MaeIII GTNAC 1 cut(s) 539
MalI GATC 5 cut(s) 65, 140, 150, 389, 401
MboI GATC 5 cut(s) 63, 138, 148, 387, 399
MboII GAAGA 3 cut(s) 21, 25, 28
MflI RGATCY 2 cut(s) 387, 399
MhlI GDGCHC 3 cut(s) 23, 515, 555
Mly113I GGCGCC 3 cut(s) 120, 258, 270
MlyI GAGTC 2 cut(s) 329, 635
MmeI TCCRAC 2 cut(s) 97, 540
MroNI GCCGGC 1 cut(s) 628
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 7 cut(s) 54, 207, 487, 569, 629, 662, 729
MspR9I CCNGG 4 cut(s) 207, 464, 488, 523
MvaI CCWGG 2 cut(s) 464, 523
MwoI GCNNNNNNNGC 3 cut(s) 126, 162, 243
NaeI GCCGGC 1 cut(s) 630
NarI GGCGCC 3 cut(s) 120, 258, 270
NciI CCSGG 2 cut(s) 207, 488
NdeII GATC 5 cut(s) 63, 138, 148, 387, 399
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 1 cut(s) 674
NlaIV GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
NmeAIII GCCGAG 2 cut(s) 38, 438
NmuCI GTSAC 1 cut(s) 539
PaeR7I CTCGAG 2 cut(s) 317, 374
PceI AGGCCT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 153, 615
PdiI GCCGGC 1 cut(s) 630
PflFI GACNNNGTC 2 cut(s) 215, 617
PkrI GCNGC 3 cut(s) 104, 131, 485
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 2 cut(s) 328, 635
PluTI GGCGCC 3 cut(s) 123, 261, 273
PpsI GAGTC 2 cut(s) 328, 635
Psp124BI GAGCTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 462, 521
PspFI CCCAGC 3 cut(s) 98, 123, 306
PspGI CCWGG 2 cut(s) 462, 521
PspN4I GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
PspPI GGNCC 2 cut(s) 183, 415
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 2 cut(s) 387, 399
PsyI GACNNNGTC 2 cut(s) 215, 617
PvuI CGATCG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 3 cut(s) 103, 130, 484
Sau3AI GATC 5 cut(s) 63, 138, 148, 387, 399
Sau96I GGNCC 2 cut(s) 183, 415
SchI GAGTC 2 cut(s) 329, 635
ScrFI CCNGG 4 cut(s) 207, 464, 488, 523
SduI GDGCHC 3 cut(s) 23, 515, 555
SfaNI GCATC 1 cut(s) 141
SfoI GGCGCC 3 cut(s) 121, 259, 271
Sfr274I CTCGAG 2 cut(s) 317, 374
SinI GGWCC 1 cut(s) 415
SlaI CTCGAG 2 cut(s) 317, 374
SmlI CTYRAG 2 cut(s) 317, 374
SmoI CTYRAG 2 cut(s) 317, 374
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 5 cut(s) 102, 130, 202, 235, 508
SspDI GGCGCC 3 cut(s) 119, 257, 269
SstI GAGCTC 1 cut(s) 515
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 4 cut(s) 205, 462, 486, 521
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 4 cut(s) 234, 282, 363, 621
TaqI TCGA 6 cut(s) 147, 318, 330, 375, 450, 715
TauI GCSGC 2 cut(s) 105, 132
TscAI CASTG 1 cut(s) 563
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 2 cut(s) 618, 624
TspRI CASTG 1 cut(s) 563
Tth111I GACNNNGTC 2 cut(s) 215, 617
VneI GTGCAC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 415
XhoI CTCGAG 2 cut(s) 317, 374
ZraI GACGTC 3 cut(s) 280, 361, 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.