MD09G1099000.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001958
Physical Location & Seq
Forward (+)
7229076 .. 7230095
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1099000.v1.1.491

Sequence Viewer

Length: 693 bp
ATGAACCCGCCACCGCCCGTACACATCAAACCATCCCCGCCGCGGCTAACCACCACGATCACCCCAACACCTGATGGAACCCACCGGAAGGTCGCGATCGCCGTCGATTTAAGCGAGGAGAGCGCCTTTGCCGTCCGATGGGCCGTACAGAACTACCTTCGACCTGGGGACTCTGTCGTCCTCCTCTACGTGCGACCCACCAGCGTCCTCTACGGCGCCGACTGGGGCTCCGTCGACCCCAACGACGCCGTCTGCTCCTCCTCCGAGTCGCAGCAGAAATTGGAGGACGACTTCGACGCCTTCATCACCACCAAGGCAGCGGACCTGGCGCAGCCGTTAGTGGAGGCGCAATTTCCGTTCAAAATCCACATAGTGAAGGACCACGACATGAAGGAGCGGCTCTGCTTGGAAGTCGAGAGGCTCTGGCTCAGCGTTGTCATCATGGGCAGCCGCGGCTTCGGAGCCGCCAAGCGTGCCGCAAAGGTCGGCAGGCTCGGCAGCGTCACTGATTACTGCGTGCAACACTGTGTCCGTCCAGTTGTGGTTGTGAGGTATCCTGACGACTCGGTCGGGTCGGGCGCTGGCGGTGAACCCGATGGCCCGGTGGAGCTCCACCCGGTGCCGGAAGAGGATCCGGAGGAATTCAACGACGGTTCCTCCTCCGATAACAATGAAGCTCATGAAATCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

231

Amino Acids

25.08

Weight (kDa)

4.81

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 29 - 184 1.6e-21 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 176, 566
AccB1I GGYRCC 2 cut(s) 215, 619
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 234
AccII CGCG 3 cut(s) 43, 95, 453
AccIII TCCGGA 1 cut(s) 634
AclWI GGATC 2 cut(s) 626, 639
AcsI RAATTY 1 cut(s) 641
AcyI GRCGYC 3 cut(s) 216, 246, 297
AdeI CACNNNGTG 2 cut(s) 373, 619
AfaI GTAC 2 cut(s) 21, 147
AfiI CCNNNNNNNGG 4 cut(s) 42, 88, 138, 622
AgsI TTSAA 2 cut(s) 361, 646
AjnI CCWGG 2 cut(s) 163, 324
AluBI AGCT 2 cut(s) 610, 677
AluI AGCT 2 cut(s) 610, 677
Alw21I GWGCWC 1 cut(s) 612
AlwI GGATC 2 cut(s) 626, 639
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 2 cut(s) 141, 598
ApeKI GCWGC 5 cut(s) 271, 317, 331, 447, 498
ApoI RAATTY 1 cut(s) 641
AsiSI GCGATCGC 1 cut(s) 99
AspLEI GCGC 5 cut(s) 125, 218, 331, 349, 581
AspS9I GGNCC 4 cut(s) 141, 322, 379, 599
AsuC2I CCSGG 2 cut(s) 602, 617
AsuHPI GGTGA 3 cut(s) 52, 298, 599
AvaII GGWCC 2 cut(s) 322, 379
BamHI GGATCC 1 cut(s) 631
BanI GGYRCC 2 cut(s) 215, 619
BanII GRGCYC 2 cut(s) 230, 612
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 5 cut(s) 283, 329, 343, 459, 510
BccI CCATC 4 cut(s) 40, 68, 132, 590
BceAI ACGGC 6 cut(s) 86, 116, 128, 229, 233, 319
BciT130I CCWGG 2 cut(s) 165, 326
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 2 cut(s) 602, 617
BfoI RGCGCY 3 cut(s) 126, 219, 582
BfuI GTATCC 1 cut(s) 564
BlpI GCTNAGC 1 cut(s) 428
Bme1390I CCNGG 4 cut(s) 165, 326, 602, 617
Bme18I GGWCC 2 cut(s) 322, 379
BmgT120I GGNCC 4 cut(s) 141, 322, 379, 599
BmiI GGNNCC 7 cut(s) 79, 217, 229, 463, 621, 633, 655
BmrFI CCNGG 4 cut(s) 165, 326, 602, 617
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
Bpu1102I GCTNAGC 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 602, 617
BsaAI YACGTR 1 cut(s) 190
BsaHI GRCGYC 3 cut(s) 216, 246, 297
BsaJI CCNNGG 4 cut(s) 41, 164, 312, 451
BsaWI WCCGGW 2 cut(s) 84, 634
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 641, 671
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 88, 138, 622
Bse1I ACTGG 2 cut(s) 227, 536
BseAI TCCGGA 1 cut(s) 634
BseBI CCWGG 2 cut(s) 165, 326
BseDI CCNNGG 4 cut(s) 41, 164, 312, 451
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 4 cut(s) 42, 88, 138, 622
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 227, 536
BseRI GAGGAG 5 cut(s) 131, 173, 247, 250, 649
BseXI GCAGC 5 cut(s) 283, 329, 343, 459, 510
Bsh1236I CGCG 3 cut(s) 43, 95, 453
Bsh1285I CGRYCG 2 cut(s) 99, 570
BshFI GGCC 2 cut(s) 143, 600
BshNI GGYRCC 2 cut(s) 215, 619
BsiEI CGRYCG 2 cut(s) 99, 570
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 5 cut(s) 85, 602, 617, 623, 635
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 4 cut(s) 42, 88, 138, 622
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 143, 600
Bsp1286I GDGCHC 2 cut(s) 230, 612
Bsp13I TCCGGA 1 cut(s) 634
Bsp143I GATC 3 cut(s) 57, 96, 631
Bsp1720I GCTNAGC 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 95
BspANI GGCC 2 cut(s) 143, 600
BspCNI CTCAG 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 634
BspFNI CGCG 3 cut(s) 43, 95, 453
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 7 cut(s) 79, 217, 229, 463, 621, 633, 655
BspPI GGATC 2 cut(s) 626, 639
BspT107I GGYRCC 2 cut(s) 215, 619
BsrBI CCGCTC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 227, 536
BssECI CCNNGG 4 cut(s) 41, 164, 312, 451
BssMI GATC 3 cut(s) 57, 96, 631
BssNI GRCGYC 3 cut(s) 216, 246, 297
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 165, 326
Bst4CI ACNGT 2 cut(s) 527, 653
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 3 cut(s) 216, 246, 297
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 4 cut(s) 474, 491, 518, 583
BstDEI CTNAG 1 cut(s) 428
BstDSI CCRYGG 2 cut(s) 41, 451
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 3 cut(s) 43, 95, 453
BstH2I RGCGCY 3 cut(s) 126, 219, 582
BstHHI GCGC 5 cut(s) 125, 218, 331, 349, 581
BstKTI GATC 3 cut(s) 60, 99, 634
BstMBI GATC 3 cut(s) 57, 96, 631
BstMCI CGRYCG 2 cut(s) 99, 570
BstMWI GCNNNNNNNGC 5 cut(s) 120, 326, 453, 473, 495
BstNI CCWGG 2 cut(s) 165, 326
BstSCI CCNGG 4 cut(s) 163, 324, 600, 615
BstUI CGCG 3 cut(s) 43, 95, 453
BstV1I GCAGC 5 cut(s) 283, 329, 343, 459, 510
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 2 cut(s) 143, 600
BtgI CCRYGG 2 cut(s) 41, 451
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 504, 523
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 474, 491, 518, 583
CciI TCATGA 1 cut(s) 679
CfoI GCGC 5 cut(s) 125, 218, 331, 349, 581
Cfr13I GGNCC 4 cut(s) 141, 322, 379, 599
Cfr42I CCGCGG 2 cut(s) 44, 454
CseI GACGC 4 cut(s) 193, 254, 305, 490
Csp6I GTAC 2 cut(s) 20, 146
CviAII CATG 3 cut(s) 388, 442, 680
CviQI GTAC 2 cut(s) 20, 146
DdeI CTNAG 1 cut(s) 428
DinI GGCGCC 1 cut(s) 217
DpnI GATC 3 cut(s) 59, 98, 633
DpnII GATC 3 cut(s) 57, 96, 631
DraIII CACNNNGTG 2 cut(s) 373, 619
DrdI GACNNNNNNGTC 2 cut(s) 176, 566
DseDI GACNNNNNNGTC 2 cut(s) 176, 566
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 230, 612
Eco47I GGWCC 2 cut(s) 322, 379
Eco53kI GAGCTC 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 163, 324
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 230, 612
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 391, 445, 683
FaiI YATR 4 cut(s) 371, 389, 443, 681
FaqI GGGAC 1 cut(s) 182
FatI CATG 3 cut(s) 387, 441, 679
FauI CCCGC 2 cut(s) 15, 45
FblI GTMKAC 1 cut(s) 234
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 2 cut(s) 230, 612
GlaI GCGC 5 cut(s) 124, 217, 330, 348, 580
HaeII RGCGCY 3 cut(s) 126, 219, 582
HaeIII GGCC 2 cut(s) 143, 600
HapII CCGG 5 cut(s) 85, 602, 617, 623, 635
HgaI GACGC 4 cut(s) 193, 254, 305, 490
HhaI GCGC 5 cut(s) 125, 218, 331, 349, 581
Hin1I GRCGYC 3 cut(s) 216, 246, 297
Hin1II CATG 3 cut(s) 391, 445, 683
Hin6I GCGC 5 cut(s) 123, 216, 329, 347, 579
HinP1I GCGC 5 cut(s) 123, 216, 329, 347, 579
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 170, 266, 563
HpaII CCGG 5 cut(s) 85, 602, 617, 623, 635
HphI GGTGA 3 cut(s) 52, 298, 599
Hpy166II GTNNAC 3 cut(s) 22, 235, 590
Hpy188I TCNGA 4 cut(s) 137, 265, 461, 664
Hpy188III TCNNGA 5 cut(s) 94, 415, 557, 635, 680
Hpy8I GTNNAC 3 cut(s) 22, 235, 590
Hpy99I CGWCG 5 cut(s) 107, 236, 248, 299, 653
HpyAV CCTTC 5 cut(s) 82, 167, 310, 370, 385
HpyCH4III ACNGT 2 cut(s) 527, 653
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 520
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 326, 453, 473, 495
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 3 cut(s) 216, 246, 297
Hsp92II CATG 3 cut(s) 391, 445, 683
HspAI GCGC 5 cut(s) 123, 216, 329, 347, 579
KasI GGCGCC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 634
KspI CCGCGG 2 cut(s) 44, 454
Kzo9I GATC 3 cut(s) 57, 96, 631
LmnI GCTCC 6 cut(s) 233, 260, 394, 461, 607, 615
Lsp1109I GCAGC 5 cut(s) 283, 329, 343, 459, 510
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 502
MalI GATC 3 cut(s) 59, 98, 633
MbiI CCGCTC 1 cut(s) 397
MboI GATC 3 cut(s) 57, 96, 631
MboII GAAGA 1 cut(s) 638
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 2 cut(s) 230, 612
MluCI AATT 3 cut(s) 278, 350, 641
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 3 cut(s) 164, 275, 557
MroI TCCGGA 1 cut(s) 634
MseI TTAA 1 cut(s) 110
MspA1I CMGCKG 3 cut(s) 43, 320, 453
MspI CCGG 5 cut(s) 85, 602, 617, 623, 635
MspR9I CCNGG 4 cut(s) 165, 326, 602, 617
MvaI CCWGG 2 cut(s) 165, 326
MvnI CGCG 3 cut(s) 43, 95, 453
MwoI GCNNNNNNNGC 5 cut(s) 120, 326, 453, 473, 495
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 2 cut(s) 602, 617
NdeII GATC 3 cut(s) 57, 96, 631
NlaIII CATG 3 cut(s) 391, 445, 683
NlaIV GGNNCC 7 cut(s) 79, 217, 229, 463, 621, 633, 655
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 502
NruI TCGCGA 1 cut(s) 95
PagI TCATGA 1 cut(s) 679
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 111, 240
PflFI GACNNNGTC 3 cut(s) 173, 248, 566
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 3 cut(s) 164, 274, 557
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 3 cut(s) 164, 274, 557
Ppu21I YACGTR 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 163, 324
PspGI CCWGG 2 cut(s) 163, 324
PspN4I GGNNCC 7 cut(s) 79, 217, 229, 463, 621, 633, 655
PspPI GGNCC 4 cut(s) 141, 322, 379, 599
PsuI RGATCY 1 cut(s) 631
PsyI GACNNNGTC 3 cut(s) 173, 248, 566
PvuI CGATCG 1 cut(s) 99
RgaI GCGATCGC 1 cut(s) 99
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 2 cut(s) 21, 147
RsaNI GTAC 2 cut(s) 20, 146
SacI GAGCTC 1 cut(s) 612
SacII CCGCGG 2 cut(s) 44, 454
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 3 cut(s) 57, 96, 631
Sau96I GGNCC 4 cut(s) 141, 322, 379, 599
SchI GAGTC 3 cut(s) 164, 275, 557
ScrFI CCNGG 4 cut(s) 165, 326, 602, 617
SduI GDGCHC 2 cut(s) 230, 612
SfaAI GCGATCGC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 217
Sfr303I CCGCGG 2 cut(s) 44, 454
SgfI GCGATCGC 1 cut(s) 99
SgrBI CCGCGG 2 cut(s) 44, 454
SinI GGWCC 2 cut(s) 322, 379
Sse9I AATT 3 cut(s) 278, 350, 641
SspDI GGCGCC 1 cut(s) 215
SstI GAGCTC 1 cut(s) 612
StyD4I CCNGG 4 cut(s) 163, 324, 600, 615
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 527, 653
TaiI ACGT 1 cut(s) 192
TaqI TCGA 6 cut(s) 105, 160, 234, 294, 414, 687
TaqII GACCGA 1 cut(s) 556
TasI AATT 3 cut(s) 278, 350, 641
TauI GCSGC 7 cut(s) 43, 46, 400, 453, 456, 467, 479
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 2 cut(s) 511, 530
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 5 cut(s) 271, 317, 331, 447, 498
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 4 cut(s) 17, 292, 404, 687
TspGWI ACGGA 3 cut(s) 220, 345, 521
TspRI CASTG 2 cut(s) 511, 530
Tth111I GACNNNGTC 3 cut(s) 173, 248, 566
VpaK11BI GGWCC 2 cut(s) 322, 379
XapI RAATTY 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.