Rroxscaffold_1G00070150

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001958
Physical Location & Seq
Forward (+)
90974026 .. 90977240
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070150.1

Sequence Viewer

Length: 846 bp
ATGGCTTCTCCGAAAAAGAGCCCGTCATCATCATCTTCAGAACCAGAGCGTCAGCACTCCGGCTCGGCGATCGTAGTCCAACCCTCCTCCCCTCGCTTCCCTCCCACCGGCACCCCCACCTCTGGCGCCCAGCGCCGCATCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTCAAGTGGGCAGTCCAAAACTACCTCCGCCCCGGCGACGCCGTCGTCCTCCTCCACGTCCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCGTCCCCGACGACGAGGCCTCCCAGCAGAAACTCGAGTCTGATTTCGACAACTTCACCCTCACCAAAGCCACCGACCTCTCCAAGCCTCTCGAGGAGGCTCGGATCCCCTACAAGATCCACATAGTAAAGGACCACGATATGAAGGAGCGTCTCTGCTTGGAGGTCGAGCGGCTCGGCCTCGTCGCCGTCATTATGGGCAGCCGGGGCTTCGGAGCCACCAAGCGGAGCTCCAACGCCAGGCTCGGTAGTGTTAGTGACTACTGTGTGCGCCACTGCGTCTGTCCGGTCATCGTCGTTAGGTTTTCCGATGACAAGGACGGAGATGGAGACGGAGACGACGTCGTAAAGCCGGCAAGGTTTGACTCTGTTCACGAGGAAGAGCCGGAGTTCCATGACGCTTTGGATAAAGAGGCTGACAGAGAGGAAGATCTCAATTCATGGCTGGCACACAACACAGAGATCAAAACCACTGCTCCGCTTAGTTTAGGGGAAACAGAATCCAAATATCTCACATCTCCAGGTGTTGAAATTTTCAATTGGATACACCGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

281

Amino Acids

30.89

Weight (kDa)

5.09

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 45 - 197 9.2e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 224, 290
AatII GACGTC 2 cut(s) 288, 633
AccB1I GGYRCC 4 cut(s) 110, 125, 263, 275
AccBSI CCGCTC 1 cut(s) 460
AciI CCGC 6 cut(s) 136, 208, 241, 460, 514, 767
AclWI GGATC 4 cut(s) 152, 388, 400, 401
AcsI RAATTY 1 cut(s) 819
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
AfiI CCNNNNNNNGG 5 cut(s) 107, 122, 186, 513, 528
AgsI TTSAA 2 cut(s) 818, 826
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 527, 808
AluBI AGCT 1 cut(s) 519
AluI AGCT 1 cut(s) 519
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 4 cut(s) 292, 446, 612, 618
AlwI GGATC 4 cut(s) 152, 388, 400, 401
Ama87I CYCGRG 2 cut(s) 323, 380
AoxI GGCC 2 cut(s) 306, 466
ApeKI GCWGC 1 cut(s) 489
ApoI RAATTY 1 cut(s) 819
AspLEI GCGC 6 cut(s) 128, 135, 173, 266, 278, 561
AspS9I GGNCC 1 cut(s) 421
AsuC2I CCSGG 2 cut(s) 213, 494
AsuHPI GGTGA 2 cut(s) 337, 343
AvaI CYCGRG 2 cut(s) 323, 380
AvaII GGWCC 1 cut(s) 421
BamHI GGATCC 1 cut(s) 393
BanI GGYRCC 4 cut(s) 110, 125, 263, 275
BanII GRGCYC 2 cut(s) 23, 521
BauI CACGAG 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 501
BccI CCATC 1 cut(s) 608
BceAI ACGGC 5 cut(s) 134, 164, 206, 277, 461
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 529, 810
BciVI GTATCC 1 cut(s) 825
BcnI CCSGG 2 cut(s) 213, 494
BcoDI GTCTC 4 cut(s) 292, 446, 612, 618
BfoI RGCGCY 5 cut(s) 129, 136, 174, 267, 279
BfuI GTATCC 1 cut(s) 825
BglII AGATCT 1 cut(s) 718
BisI GCNGC 3 cut(s) 136, 461, 490
BlsI GCNGC 3 cut(s) 137, 462, 491
Bme1390I CCNGG 4 cut(s) 213, 494, 529, 810
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 2 cut(s) 323, 380
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
BmrFI CCNGG 4 cut(s) 213, 494, 529, 810
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 792
BpuMI CCSGG 2 cut(s) 213, 494
BsaHI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
BsaJI CCNNGG 2 cut(s) 211, 493
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 6 cut(s) 293, 323, 615, 645, 748, 778
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 122, 186, 513, 528
Bse118I RCCGGY 2 cut(s) 107, 640
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 529, 810
BseDI CCNNGG 2 cut(s) 211, 493
BseLI CCNNNNNNNGG 5 cut(s) 107, 122, 186, 513, 528
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 3 cut(s) 76, 221, 398
BseXI GCAGC 1 cut(s) 501
BseYI CCCAGC 2 cut(s) 129, 312
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 308, 468
BshNI GGYRCC 4 cut(s) 110, 125, 263, 275
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 2 cut(s) 323, 380
BsiSI CCGG 7 cut(s) 60, 108, 213, 493, 575, 641, 674
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 5 cut(s) 107, 122, 186, 513, 528
BsmAI GTCTC 4 cut(s) 292, 446, 612, 618
BsmBI CGTCTC 4 cut(s) 292, 446, 612, 618
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 308, 468
BsoBI CYCGRG 2 cut(s) 323, 380
Bsp1286I GDGCHC 2 cut(s) 23, 521
Bsp143I GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
BspACI CCGC 6 cut(s) 136, 208, 241, 460, 514, 767
BspANI GGCC 2 cut(s) 308, 468
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
BspPI GGATC 4 cut(s) 152, 388, 400, 401
BspQI GCTCTTC 1 cut(s) 663
BspT107I GGYRCC 4 cut(s) 110, 125, 263, 275
BsrBI CCGCTC 1 cut(s) 460
BsrFI RCCGGY 2 cut(s) 107, 640
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 2 cut(s) 107, 640
BssECI CCNNGG 2 cut(s) 211, 493
BssMI GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
BssNI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
BssSI CACGAG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 529, 810
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 663
BstACI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
BstC8I GCNNGC 2 cut(s) 642, 735
BstDEI CTNAG 2 cut(s) 158, 770
BstH2I RGCGCY 5 cut(s) 129, 136, 174, 267, 279
BstHHI GCGC 6 cut(s) 128, 135, 173, 266, 278, 561
BstKTI GATC 7 cut(s) 72, 147, 157, 396, 408, 721, 753
BstMAI GTCTC 4 cut(s) 292, 446, 612, 618
BstMBI GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 4 cut(s) 132, 168, 249, 495
BstNI CCWGG 2 cut(s) 529, 810
BstSCI CCNGG 4 cut(s) 211, 492, 527, 808
BstV1I GCAGC 1 cut(s) 501
BstX2I RGATCY 3 cut(s) 393, 405, 718
BstYI RGATCY 3 cut(s) 393, 405, 718
BsuI GTATCC 1 cut(s) 825
BsuRI GGCC 2 cut(s) 308, 468
BtrI CACGTC 1 cut(s) 238
BtsI GCAGTG 2 cut(s) 562, 759
BtsIMutI CAGTG 2 cut(s) 562, 759
Cac8I GCNNGC 2 cut(s) 642, 735
CfoI GCGC 6 cut(s) 128, 135, 173, 266, 278, 561
Cfr10I RCCGGY 2 cut(s) 107, 640
Cfr13I GGNCC 1 cut(s) 421
CseI GACGC 6 cut(s) 38, 227, 241, 428, 556, 695
CviAII CATG 2 cut(s) 683, 729
DdeI CTNAG 2 cut(s) 158, 770
DinI GGCGCC 3 cut(s) 127, 265, 277
DpnI GATC 7 cut(s) 71, 146, 156, 395, 407, 720, 752
DpnII GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
DrdI GACNNNNNNGTC 2 cut(s) 224, 290
DseDI GACNNNNNNGTC 2 cut(s) 224, 290
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 2 cut(s) 197, 230
Ecl136II GAGCTC 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 2 cut(s) 23, 521
Eco47I GGWCC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 1 cut(s) 21
Eco88I CYCGRG 2 cut(s) 323, 380
EcoICRI GAGCTC 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 527, 808
EcoT38I GRGCYC 2 cut(s) 23, 521
EgeI GGCGCC 3 cut(s) 127, 265, 277
EheI GGCGCC 3 cut(s) 127, 265, 277
Esp3I CGTCTC 4 cut(s) 292, 446, 612, 618
FaeI CATG 2 cut(s) 686, 732
FaiI YATR 6 cut(s) 413, 431, 485, 684, 730, 844
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 682, 728
Fnu4HI GCNGC 3 cut(s) 136, 461, 490
FriOI GRGCYC 2 cut(s) 23, 521
Fsp4HI GCNGC 3 cut(s) 136, 461, 490
GlaI GCGC 6 cut(s) 127, 134, 172, 265, 277, 560
GluI GCNGC 3 cut(s) 136, 461, 490
GsaI CCCAGC 2 cut(s) 133, 316
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 5 cut(s) 129, 136, 174, 267, 279
HaeIII GGCC 2 cut(s) 308, 468
HapII CCGG 7 cut(s) 60, 108, 213, 493, 575, 641, 674
HgaI GACGC 6 cut(s) 38, 227, 241, 428, 556, 695
HhaI GCGC 6 cut(s) 128, 135, 173, 266, 278, 561
Hin1I GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
Hin1II CATG 2 cut(s) 686, 732
Hin6I GCGC 6 cut(s) 126, 133, 171, 264, 276, 559
HinP1I GCGC 6 cut(s) 126, 133, 171, 264, 276, 559
HinfI GANTC 3 cut(s) 326, 653, 788
HpaII CCGG 7 cut(s) 60, 108, 213, 493, 575, 641, 674
HphI GGTGA 2 cut(s) 337, 343
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 6 cut(s) 12, 40, 331, 393, 503, 598
Hpy188III TCNNGA 3 cut(s) 142, 380, 662
Hpy8I GTNNAC 1 cut(s) 661
HpyAV CCTTC 2 cut(s) 184, 427
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 3 cut(s) 237, 285, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 168, 249, 495
HpyF3I CTNAG 2 cut(s) 158, 770
HpySE526I ACGT 3 cut(s) 237, 285, 630
Hsp92I GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
Hsp92II CATG 2 cut(s) 686, 732
HspAI GCGC 6 cut(s) 126, 133, 171, 264, 276, 559
KasI GGCGCC 3 cut(s) 125, 263, 275
KroI GCCGGC 1 cut(s) 640
KroNI GCCGGC 1 cut(s) 642
Kzo9I GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 5 cut(s) 436, 503, 516, 524, 769
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 1 cut(s) 147
MaeII ACGT 3 cut(s) 237, 285, 630
MaeIII GTNAC 1 cut(s) 545
MalI GATC 7 cut(s) 71, 146, 156, 395, 407, 720, 752
MbiI CCGCTC 1 cut(s) 460
MboI GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
MboII GAAGA 3 cut(s) 27, 680, 728
MfeI CAATTG 1 cut(s) 826
MflI RGATCY 3 cut(s) 393, 405, 718
MhlI GDGCHC 2 cut(s) 23, 521
MluCI AATT 3 cut(s) 724, 819, 826
Mly113I GGCGCC 3 cut(s) 126, 264, 276
MlyI GAGTC 2 cut(s) 335, 647
MmeI TCCRAC 2 cut(s) 103, 546
MroNI GCCGGC 1 cut(s) 640
MspI CCGG 7 cut(s) 60, 108, 213, 493, 575, 641, 674
MspR9I CCNGG 4 cut(s) 213, 494, 529, 810
MunI CAATTG 1 cut(s) 826
MvaI CCWGG 2 cut(s) 529, 810
MwoI GCNNNNNNNGC 4 cut(s) 132, 168, 249, 495
NaeI GCCGGC 1 cut(s) 642
NarI GGCGCC 3 cut(s) 126, 264, 276
NciI CCSGG 2 cut(s) 213, 494
NdeII GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
NgoMIV GCCGGC 1 cut(s) 640
NlaIII CATG 2 cut(s) 686, 732
NlaIV GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
NmeAIII GCCGAG 2 cut(s) 44, 444
NmuCI GTSAC 1 cut(s) 545
PaeR7I CTCGAG 2 cut(s) 323, 380
PceI AGGCCT 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 663
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 159, 627
PdiI GCCGGC 1 cut(s) 642
PfeI GAWTC 1 cut(s) 788
PflFI GACNNNGTC 2 cut(s) 221, 629
PkrI GCNGC 3 cut(s) 137, 462, 491
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 2 cut(s) 334, 647
PluTI GGCGCC 3 cut(s) 129, 267, 279
PpsI GAGTC 2 cut(s) 334, 647
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 527, 808
PspFI CCCAGC 2 cut(s) 129, 312
PspGI CCWGG 2 cut(s) 527, 808
PspN4I GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
PspPI GGNCC 1 cut(s) 421
PspXI VCTCGAGB 1 cut(s) 323
PsuI RGATCY 3 cut(s) 393, 405, 718
PsyI GACNNNGTC 2 cut(s) 221, 629
PvuI CGATCG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 663
SatI GCNGC 3 cut(s) 136, 461, 490
Sau3AI GATC 7 cut(s) 69, 144, 154, 393, 405, 718, 750
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 2 cut(s) 335, 647
ScrFI CCNGG 4 cut(s) 213, 494, 529, 810
SduI GDGCHC 2 cut(s) 23, 521
SfaNI GCATC 1 cut(s) 147
SfoI GGCGCC 3 cut(s) 127, 265, 277
Sfr274I CTCGAG 2 cut(s) 323, 380
SinI GGWCC 1 cut(s) 421
SlaI CTCGAG 2 cut(s) 323, 380
SmlI CTYRAG 2 cut(s) 323, 380
SmoI CTYRAG 2 cut(s) 323, 380
Sse9I AATT 3 cut(s) 724, 819, 826
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 6 cut(s) 136, 208, 241, 460, 514, 767
SspDI GGCGCC 3 cut(s) 125, 263, 275
SstI GAGCTC 1 cut(s) 521
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 211, 492, 527, 808
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 3 cut(s) 240, 288, 633
TaqI TCGA 5 cut(s) 153, 324, 336, 381, 456
TasI AATT 3 cut(s) 724, 819, 826
TauI GCSGC 2 cut(s) 138, 463
TfiI GAWTC 1 cut(s) 788
TscAI CASTG 2 cut(s) 569, 766
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 2 cut(s) 446, 717
TspGWI ACGGA 3 cut(s) 280, 624, 636
TspRI CASTG 2 cut(s) 569, 766
Tth111I GACNNNGTC 2 cut(s) 221, 629
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 819
XhoI CTCGAG 2 cut(s) 323, 380
ZraI GACGTC 2 cut(s) 286, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.