FvH4_6g44300

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001958
Physical Location & Seq
Reverse (-)
34137208 .. 34139221
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44300.t2

Sequence Viewer

Length: 663 bp
ATGACTTCCCCCGCCGTCCTCAGCCAACCCTCCTCCCCGCGCTTCTCGCTCTCCCCCACTCCCCACCGCAAGGTCGCGATCGCCGTCGACTTAAGCGACGAGAGCGCCTACGCCGTCCGATGGGCCGCCGATCACTACCTCCGGCCCGGCGACTCCGTCGTCCTCCTCCACGTGCGCCCCACGACCGGCCTCTACGGCGCCGACTGGGGCTGGGTCCCCGTCGACTACACCCTCCCCGTCGCCGGCGACAAGAAATCCGAGGACGACTTCGACGCGCTGACGACGTCGAAGGCGACGGAGCTGGCGCAGCCGCTCGTGGAGGCCGGAATCGAGTTCAAGATCCACATAGTGAAGGATCGGGACATGAAGGAGAGGCTGTGCTTGGAGGTGGAGCGGCTAGGGCTCAGCGCCGTCATTATGGGAAGCCGAGGGTTCGGCGCCGCCGCCGCCTCCAAGAGGAGTCTCAAGATGGCGAGGCTCGGTAGCGTATCGGATTACTGCGTGCAGCACTGTGTGTGCCCCGTCGTGGTGGTGAGGTGTCCTGATGACGGGGACCGGAAGTTTGGCGGTGTTGAAGCGGTGGAGGAGGACGTGCTGCTTCCGGTGCCGGAGGAGGATCAGGAGTACAATGACGACGATGAGCATCAAGAAGGCCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

221

Amino Acids

24.08

Weight (kDa)

4.85

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 43 - 199 2.1e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AatII GACGTC 1 cut(s) 287
AccB1I GGYRCC 3 cut(s) 197, 437, 604
AccBSI CCGCTC 2 cut(s) 313, 394
AccI GTMKAC 2 cut(s) 87, 222
AccII CGCG 3 cut(s) 40, 77, 275
AclWI GGATC 3 cut(s) 334, 363, 624
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 3 cut(s) 198, 284, 438
AdeI CACNNNGTG 2 cut(s) 349, 514
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 7 cut(s) 70, 120, 185, 242, 456, 526, 548
AflII CTTAAG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 337, 575
AjiI CACGTC 1 cut(s) 592
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 3 cut(s) 334, 363, 624
AoxI GGCC 5 cut(s) 123, 143, 187, 321, 652
ApeKI GCWGC 3 cut(s) 307, 505, 595
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AsiSI GCGATCGC 1 cut(s) 81
AspLEI GCGC 8 cut(s) 42, 107, 177, 200, 277, 307, 410, 440
AspS9I GGNCC 4 cut(s) 123, 144, 214, 553
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 2 cut(s) 214, 553
BaeGI GKGCMC 1 cut(s) 521
BanI GGYRCC 3 cut(s) 197, 437, 604
BanII GRGCYC 1 cut(s) 405
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 319, 517, 582
BccI CCATC 2 cut(s) 114, 463
BceAI ACGGC 4 cut(s) 68, 98, 211, 395
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 4 cut(s) 108, 201, 411, 441
BfrI CTTAAG 1 cut(s) 91
BglI GCCNNNNNGGC 1 cut(s) 195
BisI GCNGC 9 cut(s) 126, 308, 311, 395, 441, 444, 447, 506, 596
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 9 cut(s) 127, 309, 312, 396, 442, 445, 448, 507, 597
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 2 cut(s) 214, 553
BmgBI CACGTC 1 cut(s) 592
BmgT120I GGNCC 4 cut(s) 123, 144, 214, 553
BmiI GGNNCC 6 cut(s) 199, 215, 216, 439, 554, 606
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 652
BmuI ACTGGG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 642
BsaHI GRCGYC 3 cut(s) 198, 284, 438
BsaJI CCNNGG 2 cut(s) 258, 427
BsaWI WCCGGW 2 cut(s) 555, 601
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 120, 185, 242, 456, 526, 548
Bse118I RCCGGY 2 cut(s) 185, 242
Bse1I ACTGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 258, 427
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 7 cut(s) 70, 120, 185, 242, 456, 526, 548
BseMII CTCAG 2 cut(s) 34, 418
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 5 cut(s) 22, 155, 472, 599, 626
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 3 cut(s) 319, 517, 582
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 3 cut(s) 40, 77, 275
Bsh1285I CGRYCG 2 cut(s) 81, 186
BshFI GGCC 5 cut(s) 125, 145, 189, 323, 654
BshNI GGYRCC 3 cut(s) 197, 437, 604
BsiEI CGRYCG 2 cut(s) 81, 186
BsiSI CCGG 8 cut(s) 142, 147, 186, 243, 324, 556, 602, 608
BslFI GGGAC 3 cut(s) 200, 374, 566
BslI CCNNNNNNNGG 7 cut(s) 70, 120, 185, 242, 456, 526, 548
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 3 cut(s) 200, 374, 566
BsnI GGCC 5 cut(s) 125, 145, 189, 323, 654
Bsp1286I GDGCHC 2 cut(s) 405, 521
Bsp143I GATC 5 cut(s) 78, 130, 339, 355, 616
Bsp1720I GCTNAGC 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 77
BspANI GGCC 5 cut(s) 125, 145, 189, 323, 654
BspCNI CTCAG 2 cut(s) 33, 417
BspFNI CGCG 3 cut(s) 40, 77, 275
BspLI GGNNCC 6 cut(s) 199, 215, 216, 439, 554, 606
BspPI GGATC 3 cut(s) 334, 363, 624
BspT107I GGYRCC 3 cut(s) 197, 437, 604
BspTI CTTAAG 1 cut(s) 91
BsrBI CCGCTC 2 cut(s) 313, 394
BsrFI RCCGGY 2 cut(s) 185, 242
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 2 cut(s) 185, 242
BssECI CCNNGG 2 cut(s) 258, 427
BssMI GATC 5 cut(s) 78, 130, 339, 355, 616
BssNI GRCGYC 3 cut(s) 198, 284, 438
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 512
BstACI GRCGYC 3 cut(s) 198, 284, 438
BstAFI CTTAAG 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 244, 303, 503
BstDEI CTNAG 2 cut(s) 20, 404
BstENI CCTNNNNNAGG 1 cut(s) 454
BstFNI CGCG 3 cut(s) 40, 77, 275
BstH2I RGCGCY 4 cut(s) 108, 201, 411, 441
BstHHI GCGC 8 cut(s) 42, 107, 177, 200, 277, 307, 410, 440
BstKTI GATC 5 cut(s) 81, 133, 342, 358, 619
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 5 cut(s) 78, 130, 339, 355, 616
BstMCI CGRYCG 2 cut(s) 81, 186
BstMWI GCNNNNNNNGC 7 cut(s) 46, 102, 195, 307, 400, 446, 604
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 521
BstUI CGCG 3 cut(s) 40, 77, 275
BstV1I GCAGC 3 cut(s) 319, 517, 582
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 5 cut(s) 125, 145, 189, 323, 654
BtrI CACGTC 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 508
BtuMI TCGCGA 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 244, 303, 503
CfoI GCGC 8 cut(s) 42, 107, 177, 200, 277, 307, 410, 440
Cfr10I RCCGGY 2 cut(s) 185, 242
Cfr13I GGNCC 4 cut(s) 123, 144, 214, 553
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 625
CviAII CATG 1 cut(s) 364
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 2 cut(s) 20, 404
DinI GGCGCC 2 cut(s) 199, 439
DpnI GATC 5 cut(s) 80, 132, 341, 357, 618
DpnII GATC 5 cut(s) 78, 130, 339, 355, 616
DraIII CACNNNGTG 2 cut(s) 349, 514
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 214, 553
Eco72I CACGTG 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 454
EcoO109I RGGNCCY 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 405
EgeI GGCGCC 2 cut(s) 199, 439
EheI GGCGCC 2 cut(s) 199, 439
FaeI CATG 1 cut(s) 367
FaiI YATR 3 cut(s) 347, 365, 419
FaqI GGGAC 3 cut(s) 200, 374, 566
FatI CATG 1 cut(s) 363
FauI CCCGC 2 cut(s) 19, 45
FblI GTMKAC 2 cut(s) 87, 222
Fnu4HI GCNGC 9 cut(s) 126, 308, 311, 395, 441, 444, 447, 506, 596
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 9 cut(s) 126, 308, 311, 395, 441, 444, 447, 506, 596
FspBI CTAG 1 cut(s) 398
GlaI GCGC 8 cut(s) 41, 106, 176, 199, 276, 306, 409, 439
GluI GCNGC 9 cut(s) 126, 308, 311, 395, 441, 444, 447, 506, 596
GsaI CCCAGC 1 cut(s) 214
HaeII RGCGCY 4 cut(s) 108, 201, 411, 441
HaeIII GGCC 5 cut(s) 125, 145, 189, 323, 654
HapII CCGG 8 cut(s) 142, 147, 186, 243, 324, 556, 602, 608
HgaI GACGC 1 cut(s) 281
HhaI GCGC 8 cut(s) 42, 107, 177, 200, 277, 307, 410, 440
Hin1I GRCGYC 3 cut(s) 198, 284, 438
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 8 cut(s) 40, 105, 175, 198, 275, 305, 408, 438
HinP1I GCGC 8 cut(s) 40, 105, 175, 198, 275, 305, 408, 438
HincII GTYRAC 2 cut(s) 88, 223
HindII GTYRAC 2 cut(s) 88, 223
HinfI GANTC 3 cut(s) 152, 327, 460
HpaII CCGG 8 cut(s) 142, 147, 186, 243, 324, 556, 602, 608
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 88, 223
Hpy188I TCNGA 3 cut(s) 119, 259, 493
Hpy188III TCNNGA 7 cut(s) 76, 337, 359, 466, 542, 620, 647
Hpy8I GTNNAC 2 cut(s) 88, 223
HpyAV CCTTC 4 cut(s) 283, 346, 361, 644
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 3 cut(s) 171, 284, 591
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 102, 195, 307, 400, 446, 604
HpyF3I CTNAG 2 cut(s) 20, 404
HpySE526I ACGT 3 cut(s) 171, 284, 591
Hsp92I GRCGYC 3 cut(s) 198, 284, 438
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 8 cut(s) 40, 105, 175, 198, 275, 305, 408, 438
KasI GGCGCC 2 cut(s) 197, 437
KflI GGGWCCC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 5 cut(s) 78, 130, 339, 355, 616
LmnI GCTCC 2 cut(s) 298, 391
Lsp1109I GCAGC 3 cut(s) 319, 517, 582
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 398
MaeII ACGT 3 cut(s) 171, 284, 591
MalI GATC 5 cut(s) 80, 132, 341, 357, 618
MbiI CCGCTC 2 cut(s) 313, 394
MboI GATC 5 cut(s) 78, 130, 339, 355, 616
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 405, 521
Mly113I GGCGCC 2 cut(s) 198, 438
MlyI GAGTC 2 cut(s) 146, 469
MreI CGCCGGCG 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 242
MseI TTAA 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 8 cut(s) 142, 147, 186, 243, 324, 556, 602, 608
MspR9I CCNGG 1 cut(s) 147
MvnI CGCG 3 cut(s) 40, 77, 275
MwoI GCNNNNNNNGC 7 cut(s) 46, 102, 195, 307, 400, 446, 604
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 2 cut(s) 198, 438
NciI CCSGG 1 cut(s) 147
NdeII GATC 5 cut(s) 78, 130, 339, 355, 616
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 6 cut(s) 199, 215, 216, 439, 554, 606
NmeAIII GCCGAG 1 cut(s) 452
NruI TCGCGA 1 cut(s) 77
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 93, 290
PdiI GCCGGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 327
PflFI GACNNNGTC 2 cut(s) 155, 283
PkrI GCNGC 9 cut(s) 127, 309, 312, 396, 442, 445, 448, 507, 597
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 2 cut(s) 146, 468
PluTI GGCGCC 2 cut(s) 201, 441
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
PpsI GAGTC 2 cut(s) 146, 468
Ppu21I YACGTR 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspCI CACGTG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 210
PspN4I GGNNCC 6 cut(s) 199, 215, 216, 439, 554, 606
PspPI GGNCC 4 cut(s) 123, 144, 214, 553
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 339
PsyI GACNNNGTC 2 cut(s) 155, 283
PvuI CGATCG 1 cut(s) 81
RgaI GCGATCGC 1 cut(s) 81
RruI TCGCGA 1 cut(s) 77
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SalI GTCGAC 2 cut(s) 86, 221
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 9 cut(s) 126, 308, 311, 395, 441, 444, 447, 506, 596
Sau3AI GATC 5 cut(s) 78, 130, 339, 355, 616
Sau96I GGNCC 4 cut(s) 123, 144, 214, 553
SchI GAGTC 2 cut(s) 146, 469
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 2 cut(s) 405, 521
SetI ASST 8 cut(s) 75, 141, 174, 287, 303, 390, 539, 594
SfaAI GCGATCGC 1 cut(s) 81
SfaNI GCATC 1 cut(s) 652
SfoI GGCGCC 2 cut(s) 199, 439
SgfI GCGATCGC 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 2 cut(s) 214, 553
SmlI CTYRAG 2 cut(s) 91, 464
SmoI CTYRAG 2 cut(s) 91, 464
SspDI GGCGCC 2 cut(s) 197, 437
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 3 cut(s) 174, 287, 594
TaqI TCGA 5 cut(s) 87, 222, 270, 287, 330
TatI WGTACW 1 cut(s) 624
TauI GCSGC 6 cut(s) 128, 313, 397, 443, 446, 449
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 515
TseI GCWGC 3 cut(s) 307, 505, 595
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 2 cut(s) 145, 311
TspRI CASTG 1 cut(s) 515
Tth111I GACNNNGTC 2 cut(s) 155, 283
Vha464I CTTAAG 1 cut(s) 91
VpaK11BI GGWCC 2 cut(s) 214, 553
XagI CCTNNNNNAGG 1 cut(s) 454
XmiI GTMKAC 2 cut(s) 87, 222
XspI CTAG 1 cut(s) 398
ZraI GACGTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.