RLG00000021263

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001958
Physical Location & Seq
Reverse (-)
73502515 .. 73503558
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021263

Sequence Viewer

Length: 678 bp
ATGAACCCTCCCGCCGCACCCAGCCAACCCTCCTCCCCTCTCTTCCCGCTCTCGCCCAGTCCCCACCGCAAGGTCGCGATCGCCGTCGATTTGAGCGACGAGAGCGCCTACGCCGTCCGGTGGGCTGCCGAGCAGTACCTCCGACCCGGCGACGCCGTCGTCCTCCTCCACGTGCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCTGGGTCCCGGTCGACTACACCCTCCCCGTCGCCGGCGACAAGAAATCGGAGGACGACTTCGACTCGTTGACCACGGCCAAGGCGACGGAGCTGGCGCGGCCGCTCGTGGAGGCCGGAATCGAGTTCAAAATCCACATAGTGAAGGATCGCGACATGAAGGAGAGGCTGTGCTTGGAGGTGGAGAGGCTCGGCCTCAGCGCCGTCATTATGGGCAGCCGAGGGTTCGGCGCCTCCGCCTCCGCCTCCGCCTCCAAGAGGAGCCTCAAGATGGCGAGGCTCGGAAGCGTATCGGATTACTGTGTGCAGCACTGTGTGTGTCCCGTCGTGGTGGTGAGGTGTCCTGATGACGTGGAGCGGAGGTTTGGCGGCGATGGTGGTGGTACTGAAGCGGCGGAGGACGTTCTGCTTCCGGTGCCGGAGGAGGATCAGGAGGACAATGAGGACGGTGAGCCTCGAGAAATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

226

Amino Acids

24.34

Weight (kDa)

4.75

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 23 - 182 1.6e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 3 cut(s) 197, 437, 622
AccBSI CCGCTC 3 cut(s) 49, 313, 565
AccI GTMKAC 1 cut(s) 222
AccII CGCG 3 cut(s) 77, 307, 360
AclWI GGATC 2 cut(s) 363, 642
AcoI YGGCCR 2 cut(s) 285, 308
AcuI CTGAAG 1 cut(s) 615
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 3 cut(s) 153, 198, 438
AdeI CACNNNGTG 2 cut(s) 349, 523
AfaI GTAC 2 cut(s) 137, 592
AfiI CCNNNNNNNGG 5 cut(s) 70, 120, 242, 465, 478
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 559
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 2 cut(s) 363, 642
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 4 cut(s) 285, 308, 321, 400
ApeKI GCWGC 3 cut(s) 125, 423, 514
AsiSI GCGATCGC 1 cut(s) 81
AspLEI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 2 cut(s) 147, 218
AsuHPI GGTGA 2 cut(s) 553, 668
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 1 cut(s) 214
BanI GGYRCC 3 cut(s) 197, 437, 622
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 112, 435, 526
BccI CCATC 2 cut(s) 472, 575
BceAI ACGGC 6 cut(s) 68, 98, 140, 211, 300, 395
BcnI CCSGG 2 cut(s) 147, 218
BfoI RGCGCY 4 cut(s) 108, 201, 411, 441
BisI GCNGC 8 cut(s) 15, 126, 308, 311, 424, 515, 577, 600
BlsI GCNGC 8 cut(s) 16, 127, 309, 312, 425, 516, 578, 601
Bme1390I CCNGG 2 cut(s) 147, 218
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 663
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 6 cut(s) 199, 215, 216, 439, 470, 624
BmrFI CCNGG 2 cut(s) 147, 218
BmrI ACTGGG 2 cut(s) 51, 214
BmuI ACTGGG 2 cut(s) 51, 214
Bpu10I CCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 147, 218
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 3 cut(s) 153, 198, 438
BsaJI CCNNGG 3 cut(s) 282, 288, 427
BsaWI WCCGGW 2 cut(s) 117, 619
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 554, 584
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 120, 242, 465, 478
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 57, 209
BseDI CCNNGG 3 cut(s) 282, 288, 427
BseLI CCNNNNNNNGG 5 cut(s) 70, 120, 242, 465, 478
BseMII CTCAG 1 cut(s) 418
BseNI ACTGG 2 cut(s) 57, 209
BseRI GAGGAG 4 cut(s) 22, 155, 481, 644
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 112, 435, 526
BseYI CCCAGC 2 cut(s) 20, 210
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 3 cut(s) 77, 307, 360
Bsh1285I CGRYCG 3 cut(s) 81, 222, 311
BshFI GGCC 4 cut(s) 287, 310, 323, 402
BshNI GGYRCC 3 cut(s) 197, 437, 622
BsiEI CGRYCG 3 cut(s) 81, 222, 311
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 7 cut(s) 118, 147, 218, 243, 324, 620, 626
BslFI GGGAC 3 cut(s) 45, 200, 513
BslI CCNNNNNNNGG 5 cut(s) 70, 120, 242, 465, 478
BsmFI GGGAC 3 cut(s) 45, 200, 513
BsnI GGCC 4 cut(s) 287, 310, 323, 402
BsoBI CYCGRG 1 cut(s) 663
Bsp143I GATC 3 cut(s) 78, 355, 634
Bsp68I TCGCGA 2 cut(s) 77, 360
BspANI GGCC 4 cut(s) 287, 310, 323, 402
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 3 cut(s) 77, 307, 360
BspLI GGNNCC 6 cut(s) 199, 215, 216, 439, 470, 624
BspPI GGATC 2 cut(s) 363, 642
BspT107I GGYRCC 3 cut(s) 197, 437, 622
BsrBI CCGCTC 3 cut(s) 49, 313, 565
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 57, 209
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 282, 288, 427
BssMI GATC 3 cut(s) 78, 355, 634
BssNI GRCGYC 3 cut(s) 153, 198, 438
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 509, 521, 656
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 3 cut(s) 153, 198, 438
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 244, 303
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 463
BstFNI CGCG 3 cut(s) 77, 307, 360
BstH2I RGCGCY 4 cut(s) 108, 201, 411, 441
BstHHI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
BstKTI GATC 3 cut(s) 81, 358, 637
BstMBI GATC 3 cut(s) 78, 355, 634
BstMCI CGRYCG 3 cut(s) 81, 222, 311
BstMWI GCNNNNNNNGC 4 cut(s) 102, 183, 307, 622
BstSCI CCNGG 2 cut(s) 145, 216
BstUI CGCG 3 cut(s) 77, 307, 360
BstV1I GCAGC 3 cut(s) 112, 435, 526
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 4 cut(s) 287, 310, 323, 402
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 594
BtrI CACGTC 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 517
BtuMI TCGCGA 2 cut(s) 77, 360
Cac8I GCNNGC 2 cut(s) 244, 303
CciNI GCGGCCGC 1 cut(s) 308
CfoI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 2 cut(s) 161, 175
Csp6I GTAC 2 cut(s) 136, 591
CviAII CATG 1 cut(s) 364
CviQI GTAC 2 cut(s) 136, 591
DdeI CTNAG 1 cut(s) 404
DinI GGCGCC 2 cut(s) 199, 439
DpnI GATC 3 cut(s) 80, 357, 636
DpnII GATC 3 cut(s) 78, 355, 634
DraIII CACNNNGTG 2 cut(s) 349, 523
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 2 cut(s) 285, 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 4 cut(s) 433, 439, 445, 617
EclXI CGGCCG 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 214
Eco52I CGGCCG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 615
Eco72I CACGTG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 288
EgeI GGCGCC 2 cut(s) 199, 439
EheI GGCGCC 2 cut(s) 199, 439
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 367
FaiI YATR 3 cut(s) 347, 365, 419
FaqI GGGAC 3 cut(s) 45, 200, 513
FatI CATG 1 cut(s) 363
FauI CCCGC 2 cut(s) 19, 54
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 8 cut(s) 15, 126, 308, 311, 424, 515, 577, 600
Fsp4HI GCNGC 8 cut(s) 15, 126, 308, 311, 424, 515, 577, 600
GlaI GCGC 6 cut(s) 106, 176, 199, 306, 409, 439
GluI GCNGC 8 cut(s) 15, 126, 308, 311, 424, 515, 577, 600
GsaI CCCAGC 2 cut(s) 24, 214
HaeII RGCGCY 4 cut(s) 108, 201, 411, 441
HaeIII GGCC 4 cut(s) 287, 310, 323, 402
HapII CCGG 7 cut(s) 118, 147, 218, 243, 324, 620, 626
HgaI GACGC 2 cut(s) 161, 175
HhaI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
Hin1I GRCGYC 3 cut(s) 153, 198, 438
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 6 cut(s) 105, 175, 198, 305, 408, 438
HinP1I GCGC 6 cut(s) 105, 175, 198, 305, 408, 438
HincII GTYRAC 2 cut(s) 223, 279
HindII GTYRAC 2 cut(s) 223, 279
HinfI GANTC 2 cut(s) 272, 327
HpaII CCGG 7 cut(s) 118, 147, 218, 243, 324, 620, 626
HphI GGTGA 2 cut(s) 553, 668
Hpy166II GTNNAC 2 cut(s) 223, 279
Hpy188I TCNGA 4 cut(s) 143, 259, 491, 502
Hpy188III TCNNGA 6 cut(s) 76, 359, 475, 551, 638, 665
Hpy8I GTNNAC 2 cut(s) 223, 279
Hpy99I CGWCG 7 cut(s) 89, 101, 155, 161, 242, 298, 536
HpyAV CCTTC 2 cut(s) 346, 361
HpyCH4III ACNGT 3 cut(s) 509, 521, 656
HpyCH4IV ACGT 3 cut(s) 171, 558, 609
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 183, 307, 622
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 3 cut(s) 171, 558, 609
Hsp92I GRCGYC 3 cut(s) 153, 198, 438
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 6 cut(s) 105, 175, 198, 305, 408, 438
KasI GGCGCC 2 cut(s) 197, 437
KflI GGGWCCC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 78, 355, 634
LmnI GCTCC 3 cut(s) 298, 468, 562
Lsp1109I GCAGC 3 cut(s) 112, 435, 526
MaeII ACGT 3 cut(s) 171, 558, 609
MalI GATC 3 cut(s) 80, 357, 636
MbiI CCGCTC 3 cut(s) 49, 313, 565
MboI GATC 3 cut(s) 78, 355, 634
MboII GAAGA 1 cut(s) 34
MluCI AATT 1 cut(s) 669
Mly113I GGCGCC 2 cut(s) 198, 438
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 166
MreI CGCCGGCG 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 242
MseI TTAA 1 cut(s) 672
MspI CCGG 7 cut(s) 118, 147, 218, 243, 324, 620, 626
MspR9I CCNGG 2 cut(s) 147, 218
MvnI CGCG 3 cut(s) 77, 307, 360
MwoI GCNNNNNNNGC 4 cut(s) 102, 183, 307, 622
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 2 cut(s) 198, 438
NciI CCSGG 2 cut(s) 147, 218
NdeII GATC 3 cut(s) 78, 355, 634
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 6 cut(s) 199, 215, 216, 439, 470, 624
NmeAIII GCCGAG 3 cut(s) 154, 378, 452
NotI GCGGCCGC 1 cut(s) 308
NruI TCGCGA 2 cut(s) 77, 360
PaeR7I CTCGAG 1 cut(s) 663
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 93, 290
PdiI GCCGGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 16, 127, 309, 312, 425, 516, 578, 601
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 1 cut(s) 266
PluTI GGCGCC 2 cut(s) 201, 441
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspCI CACGTG 1 cut(s) 172
PspFI CCCAGC 2 cut(s) 20, 210
PspN4I GGNNCC 6 cut(s) 199, 215, 216, 439, 470, 624
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 81
RgaI GCGATCGC 1 cut(s) 81
RruI TCGCGA 2 cut(s) 77, 360
RsaI GTAC 2 cut(s) 137, 592
RsaNI GTAC 2 cut(s) 136, 591
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 8 cut(s) 15, 126, 308, 311, 424, 515, 577, 600
Sau3AI GATC 3 cut(s) 78, 355, 634
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 147, 218
SetI ASST 9 cut(s) 75, 141, 174, 303, 390, 548, 561, 572, 612
SfaAI GCGATCGC 1 cut(s) 81
SfoI GGCGCC 2 cut(s) 199, 439
Sfr274I CTCGAG 1 cut(s) 663
SgfI GCGATCGC 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 473, 663
SmoI CTYRAG 2 cut(s) 473, 663
Sse9I AATT 1 cut(s) 669
SspDI GGCGCC 2 cut(s) 197, 437
StyD4I CCNGG 2 cut(s) 145, 216
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 509, 521, 656
TaiI ACGT 3 cut(s) 174, 561, 612
TaqI TCGA 5 cut(s) 87, 222, 270, 330, 664
TasI AATT 1 cut(s) 669
TauI GCSGC 5 cut(s) 17, 310, 313, 579, 602
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 524
TseI GCWGC 3 cut(s) 125, 423, 514
TspDTI ATGAA 2 cut(s) 17, 380
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 524
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 214
XagI CCTNNNNNAGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.