Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001958

Physical Location & Seq

Genomic Coordinates Forward (+)

57853479 .. 57856669

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0417300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGACTACGGATACTACTGTTCTAAGATATTGGTGGAACTGGAGGTTCTTGATCAGTGCAATATTTATATTGTCTAGTATGGTTCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGGAAGAAGAGAAAATCAGCGCGAAACAGTAGGATCTCTATATGAGGATGAAGCCTGGAGGACATCTTTCAAAGTAATTCATCCCACTTGGCTTCTTGCTTACAGAGTTGTTGTTTTCGTTTTGCTTCTGTCCTTGATAGTTACCAATTTTGTTCTTGATGGAGCTGGCATACTTTACTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAATAGAGTTGGTGAGGATGCAGCTGATCGTGTGAGACATGAAGAACAAGGTAGTACTTATGTTGCTCCAACACTTGGCAAAAATGCAGATACATCCAACTCATCTAAAAGTTTCACTGACGAAGAATGTCCCTCCCACCAAGGCGCTGGTCTAATTGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGCGCTGTGGTGCTCACTGATGTGGTATTTTGGCTCATTCTGTATCCATTTCTAACAAGCAAAGATTACAAACTGGACTTTATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGCGGTTTCCATTGTTTCGAATCTCATATTTTGTGCTATGGACTGGAGTATTCGTGATTTTCCAATGGATAATCCACGCTTGTAAAAACATGTGGTGGCCTTATCCATTTCTCGACTTGTCATCCTCATATGCACCCTTATGGTATCTTGGGGTTGGAGTGATGCATATCCCATGCTATGGAATCTTCGCTTTAATTATTTGGATGAAGCAGTGTGGTTCTCAAGATCATTCCCGGAGTCTTTTCAGGGTGAGAGGTGACACGCTGTGTTCATTGAATCACAAGACTTCATACTGTGCCACCAACCCGGCACAATCATTAGATATAAAAGAACCATTAGTGATATCATTTTTTGGCCTAGACATGGGAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

370

Amino Acids

42.69

Weight (kDa)

8.43

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11360 AT1G11360 AT1G11360 AT1G11360
fragaria_vesca	FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_6g44300 FvH4_6g44300 FvH4_6g44300
malus_domestica	MD05G1329100.v1.1 MD09G1099000.v1.1 MD10G1306000.v1.1 MD17G1087300.v1.1
prunus_persica	Prupe.3G227200_v2.0.a1 Prupe.4G033700_v2.0.a1
pyrus_communis	pycom05g30240 pycom09g02270 pycom10g25830 pycom17g08450
rosa_chinensis	RchiOBHm_Chr2g0161161 RchiOBHm_Chr5g0005691
rosa_laevigata	RLG00000021263 RLG00000031318
rosa_multiflora	Rmu_co8321989.1_g000001 Rmu_sc0000570.1_g000027 Rmu_sc0006420.1_g000039
rosa_roxburghii	Rroxscaffold_1G00070150 Rroxscaffold_2G00089070
rosa_rugosa	Rorug02G0486700 Rorug04G0417300 Rorug04G0417300
rosa_samantha	Rh2AG553400 Rh2BG567100 Rh2CG537200 Rh2DG576400 Rh5AG199300 Rh5BG043600 Rh5CG217700 Rh5DG199600 Rh5DG199700
rosa_wichuraiana	Rw0G008360 Rw2G045770 Rw5G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	473, 914
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	90, 397, 739
AclWI	GGATC	2 cut(s)	175, 370
AcoI	YGGCCR	1 cut(s)	678
AdeI	CACNNNGTG	1 cut(s)	1002
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	3 cut(s)	473, 914, 1099
AflIII	ACRYGT	1 cut(s)	825
AgsI	TTSAA	5 cut(s)	205, 569, 697, 730, 1012
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	1 cut(s)	611
AluBI	AGCT	3 cut(s)	299, 422, 735
AluI	AGCT	3 cut(s)	299, 422, 735
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	2 cut(s)	427, 713
AlwI	GGATC	2 cut(s)	175, 370
AoxI	GGCC	3 cut(s)	678, 833, 1090
ApeKI	GCWGC	2 cut(s)	117, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	3 cut(s)	156, 545, 596
AsuC2I	CCSGG	2 cut(s)	970, 1043
AsuHPI	GGTGA	4 cut(s)	422, 728, 997, 1004
AsuII	TTCGAA	1 cut(s)	754
BaeI	ACNNNNGTAYC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	104, 431
BccI	CCATC	2 cut(s)	287, 670
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	2 cut(s)	4, 645
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	970, 1043
BcoDI	GTCTC	2 cut(s)	427, 713
BfaI	CTAG	3 cut(s)	75, 86, 1094
BfoI	RGCGCY	2 cut(s)	546, 597
BfuI	GTATCC	2 cut(s)	4, 645
BisI	GCNGC	3 cut(s)	90, 118, 420
BlsI	GCNGC	3 cut(s)	91, 119, 421
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	3 cut(s)	190, 970, 1043
BmrFI	CCNGG	3 cut(s)	190, 970, 1043
BmsI	GCATC	3 cut(s)	374, 406, 888
BpmI	CTGGAG	3 cut(s)	61, 211, 801
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	942
BpuMI	CCSGG	2 cut(s)	970, 1043
BsaBI	GATNNNNATC	1 cut(s)	902
BsaJI	CCNNGG	2 cut(s)	538, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 914, 1099
Bse1I	ACTGG	4 cut(s)	44, 669, 681, 784
Bse8I	GATNNNNATC	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	538, 712
BseGI	GGATG	7 cut(s)	187, 214, 389, 421, 491, 857, 945
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	3 cut(s)	473, 914, 1099
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	4 cut(s)	44, 669, 681, 784
BseXI	GCAGC	2 cut(s)	104, 431
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	680, 835, 1092
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	970, 1043
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	3 cut(s)	473, 914, 1099
BsmAI	GTCTC	2 cut(s)	427, 713
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	680, 835, 1092
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	5 cut(s)	51, 167, 362, 424, 961
BspACI	CCGC	3 cut(s)	90, 397, 739
BspANI	GGCC	3 cut(s)	680, 835, 1092
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	156
BspPI	GGATC	2 cut(s)	175, 370
BspT104I	TTCGAA	1 cut(s)	754
BsrI	ACTGG	4 cut(s)	44, 669, 681, 784
BssECI	CCNNGG	2 cut(s)	538, 712
BssMI	GATC	5 cut(s)	51, 167, 362, 424, 961
BssT1I	CCWWGG	2 cut(s)	538, 712
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	19, 163, 1031
Bst6I	CTCTTC	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	301, 737
BstDEI	CTNAG	2 cut(s)	23, 321
BstF5I	GGATG	7 cut(s)	187, 214, 389, 421, 491, 857, 945
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	546, 597
BstHHI	GCGC	3 cut(s)	156, 545, 596
BstKTI	GATC	5 cut(s)	54, 170, 365, 427, 964
BstMAI	GTCTC	2 cut(s)	427, 713
BstMBI	GATC	5 cut(s)	51, 167, 362, 424, 961
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	829
BstSCI	CCNGG	3 cut(s)	188, 968, 1041
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	104, 431
BstX2I	RGATCY	2 cut(s)	167, 362
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	2 cut(s)	167, 362
BsuI	GTATCC	2 cut(s)	4, 645
BsuRI	GGCC	3 cut(s)	680, 835, 1092
BtsCI	GGATG	7 cut(s)	187, 214, 389, 421, 491, 857, 945
BtsI	GCAGTG	1 cut(s)	953
BtsIMutI	CAGTG	5 cut(s)	61, 329, 513, 606, 953
Cac8I	GCNNGC	2 cut(s)	301, 737
CfoI	GCGC	3 cut(s)	156, 545, 596
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	4 cut(s)	437, 826, 909, 1099
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	23, 321
DpnI	GATC	5 cut(s)	53, 169, 364, 426, 963
DpnII	GATC	5 cut(s)	51, 167, 362, 424, 961
DraIII	CACNNNGTG	1 cut(s)	1002
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	538, 712
Eco32I	GATATC	1 cut(s)	1080
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	1080
EcoT14I	CCWWGG	2 cut(s)	538, 712
EcoT22I	ATGCAT	1 cut(s)	903
ErhI	CCWWGG	2 cut(s)	538, 712
FaeI	CATG	4 cut(s)	440, 829, 912, 1102
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	436, 825, 908, 1098
FauNDI	CATATG	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	90, 118, 420
FokI	GGATG	7 cut(s)	194, 201, 396, 428, 478, 844, 952
Fsp4HI	GCNGC	3 cut(s)	90, 118, 420
FspBI	CTAG	3 cut(s)	75, 86, 1094
GlaI	GCGC	3 cut(s)	155, 544, 595
GluI	GCNGC	3 cut(s)	90, 118, 420
GsuI	CTGGAG	3 cut(s)	61, 211, 801
HaeII	RGCGCY	2 cut(s)	546, 597
HaeIII	GGCC	3 cut(s)	680, 835, 1092
HapII	CCGG	2 cut(s)	970, 1043
HhaI	GCGC	3 cut(s)	156, 545, 596
Hin1II	CATG	4 cut(s)	440, 829, 912, 1102
Hin6I	GCGC	3 cut(s)	154, 543, 594
HinP1I	GCGC	3 cut(s)	154, 543, 594
HinfI	GANTC	4 cut(s)	756, 918, 973, 1012
HpaII	CCGG	2 cut(s)	970, 1043
HphI	GGTGA	4 cut(s)	422, 728, 997, 1004
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	6 cut(s)	49, 129, 290, 790, 848, 959
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	107, 126
HpyCH4III	ACNGT	3 cut(s)	19, 163, 1031
HpyCH4V	TGCA	7 cut(s)	59, 120, 419, 485, 688, 869, 901
HpyF3I	CTNAG	2 cut(s)	23, 321
Hsp92II	CATG	4 cut(s)	440, 829, 912, 1102
HspAI	GCGC	3 cut(s)	154, 543, 594
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	5 cut(s)	51, 167, 362, 424, 961
LmnI	GCTCC	2 cut(s)	296, 469
Lsp1109I	GCAGC	2 cut(s)	104, 431
LweI	GCATC	3 cut(s)	374, 406, 888
MaeI	CTAG	3 cut(s)	75, 86, 1094
MaeIII	GTNAC	3 cut(s)	274, 340, 992
MalI	GATC	5 cut(s)	53, 169, 364, 426, 963
MboI	GATC	5 cut(s)	51, 167, 362, 424, 961
MboII	GAAGA	6 cut(s)	150, 153, 357, 452, 533, 913
MflI	RGATCY	2 cut(s)	167, 362
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	4 cut(s)	210, 280, 552, 930
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	982
MmeI	TCCRAC	3 cut(s)	491, 519, 871
MnlI	CCTC	8 cut(s)	36, 172, 186, 406, 541, 719, 871, 983
Mox20I	TGGCCA	1 cut(s)	680
Mph1103I	ATGCAT	1 cut(s)	903
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	1 cut(s)	929
MslI	CAYNNNNRTG	2 cut(s)	611, 874
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	970, 1043
MspR9I	CCNGG	3 cut(s)	190, 970, 1043
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	156
NciI	CCSGG	2 cut(s)	970, 1043
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	5 cut(s)	51, 167, 362, 424, 961
NlaIII	CATG	4 cut(s)	440, 829, 912, 1102
NmuCI	GTSAC	2 cut(s)	340, 992
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	1 cut(s)	829
NspV	TTCGAA	1 cut(s)	754
OliI	CACNNNNGTG	1 cut(s)	611
PciI	ACATGT	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	756, 918, 1012
PflMI	CCANNNNNTGG	2 cut(s)	473, 914
PfoI	TCCNGGA	1 cut(s)	968
PkrI	GCNGC	3 cut(s)	91, 119, 421
PleI	GAGTC	1 cut(s)	981
PpsI	GAGTC	1 cut(s)	981
PscI	ACATGT	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	167, 362
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	2 cut(s)	611, 874
SaqAI	TTAA	1 cut(s)	929
SatI	GCNGC	3 cut(s)	90, 118, 420
Sau3AI	GATC	5 cut(s)	51, 167, 362, 424, 961
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	1 cut(s)	982
ScrFI	CCNGG	3 cut(s)	190, 970, 1043
SduI	GDGCHC	1 cut(s)	606
SetI	ASST	6 cut(s)	47, 301, 424, 451, 737, 994
SfaNI	GCATC	3 cut(s)	374, 406, 888
SfuI	TTCGAA	1 cut(s)	754
SmiMI	CAYNNNNRTG	2 cut(s)	611, 874
SmlI	CTYRAG	1 cut(s)	957
SmoI	CTYRAG	1 cut(s)	957
Sse9I	AATT	4 cut(s)	210, 280, 552, 930
SsiI	CCGC	3 cut(s)	90, 397, 739
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	3 cut(s)	75, 86, 1094
StyD4I	CCNGG	3 cut(s)	188, 968, 1041
StyI	CCWWGG	2 cut(s)	538, 712
TaaI	ACNGT	3 cut(s)	19, 163, 1031
TaqI	TCGA	2 cut(s)	754, 849
TasI	AATT	4 cut(s)	210, 280, 552, 930
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	756, 918, 1012
Tru1I	TTAA	1 cut(s)	929
Tru9I	TTAA	1 cut(s)	929
TscAI	CASTG	5 cut(s)	61, 329, 520, 613, 953
TseFI	GTSAC	2 cut(s)	340, 992
TseI	GCWGC	2 cut(s)	117, 419
Tsp45I	GTSAC	2 cut(s)	340, 992
TspDTI	ATGAA	7 cut(s)	126, 198, 203, 453, 956, 996, 1014
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	5 cut(s)	61, 329, 520, 613, 953
Van91I	CCANNNNNTGG	2 cut(s)	473, 914
XceI	RCATGY	1 cut(s)	829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XspI	CTAG	3 cut(s)	75, 86, 1094
ZrmI	AGTACT	1 cut(s)	454
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.