Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001958

Physical Location & Seq

Genomic Coordinates Forward (+)

23466309 .. 23468674

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG199300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCACCGGGAGTTCGGAGCCACCAAGCGGAGCTCGAACGCCAGGCTCGGCAGTGTCAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATAGTCATTAGGTTTTCTGATGACAAGAAGGAGATGGAGACGACGTTGTACAGTCGGCGAGTATTTGACTCTGTTAATGTGGTTGCGGGCGCCGGAACATCGATCCACTACGAGTTCAACAGCCTCAACTCGCCGCTCTACCCGAGGACCCAAGGATTCAATTTCGGCTCCTCCAAAATCCGATTCCAGAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

9.22

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11360 AT1G11360 AT1G11360 AT1G11360
fragaria_vesca	FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_6g44300 FvH4_6g44300 FvH4_6g44300
malus_domestica	MD05G1329100.v1.1 MD09G1099000.v1.1 MD10G1306000.v1.1 MD17G1087300.v1.1
prunus_persica	Prupe.3G227200_v2.0.a1 Prupe.4G033700_v2.0.a1
pyrus_communis	pycom05g30240 pycom09g02270 pycom10g25830 pycom17g08450
rosa_chinensis	RchiOBHm_Chr2g0161161 RchiOBHm_Chr5g0005691
rosa_laevigata	RLG00000021263 RLG00000031318
rosa_multiflora	Rmu_co8321989.1_g000001 Rmu_sc0000570.1_g000027 Rmu_sc0006420.1_g000039
rosa_roxburghii	Rroxscaffold_1G00070150 Rroxscaffold_2G00089070
rosa_rugosa	Rorug02G0486700 Rorug04G0417300 Rorug04G0417300
rosa_samantha	Rh2AG553400 Rh2BG567100 Rh2CG537200 Rh2DG576400 Rh5AG199300 Rh5BG043600 Rh5CG217700 Rh5DG199600 Rh5DG199700
rosa_wichuraiana	Rw0G008360 Rw2G045770 Rw5G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	229
AciI	CCGC	3 cut(s)	28, 179, 227
AclWI	GGATC	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	211, 253
AjnI	CCWGG	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	2 cut(s)	35, 75
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	235
ApaLI	GTGCAC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	35, 75
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	186
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	8, 43
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	4 cut(s)	19, 184, 242, 262
BmrFI	CCNGG	2 cut(s)	8, 43
BpuMI	CCSGG	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	236, 244
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	236, 244
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	194
BsiHKAI	GWGCWC	2 cut(s)	35, 75
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	7, 89, 186
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	35, 75
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	3 cut(s)	28, 179, 227
BspDI	ATCGAT	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	19, 184, 242, 262
BspPI	GGATC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	236, 244
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	68, 146
BstACI	GRCGYC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	6, 41
BstSLI	GKGCMC	1 cut(s)	75
Bsu15I	ATCGAT	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	194
BtsI	GCAGTG	2 cut(s)	58, 76
BtsIMutI	CAGTG	3 cut(s)	58, 64, 76
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	5 cut(s)	20, 33, 46, 216, 261
CviKI_1	RGCY	5 cut(s)	20, 33, 46, 216, 261
CviQI	GTAC	1 cut(s)	142
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	125
FaiI	YATR	1 cut(s)	95
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	186
HapII	CCGG	3 cut(s)	7, 89, 186
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	161, 249, 276
HpaII	CCGG	3 cut(s)	7, 89, 186
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	17, 112, 275
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	68, 146
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	4, 73
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	1 cut(s)	183
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	3 cut(s)	17, 30, 266
LpnPI	CCDG	5 cut(s)	20, 28, 55, 102, 199
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	197
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	35, 75
MluCI	AATT	1 cut(s)	253
Mly113I	GGCGCC	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	3 cut(s)	227, 231, 274
MseI	TTAA	1 cut(s)	168
MspI	CCGG	3 cut(s)	7, 89, 186
MspR9I	CCNGG	2 cut(s)	8, 43
MvaI	CCWGG	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	195
NlaIV	GGNNCC	4 cut(s)	19, 184, 242, 262
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	249, 276
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	155
PluTI	GGCGCC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	19, 184, 242, 262
PspPI	GGNCC	1 cut(s)	240
PspPPI	RGGWCCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	8, 43
SduI	GDGCHC	2 cut(s)	35, 75
SetI	ASST	3 cut(s)	35, 107, 140
SfoI	GGCGCC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	240
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	3 cut(s)	28, 179, 227
SspDI	GGCGCC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	6, 41
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	68, 146
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	35, 194
TasI	AATT	1 cut(s)	253
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	249, 276
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	58, 64, 83
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	3 cut(s)	58, 64, 83
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.