Rorug02G0486700

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001958
Physical Location & Seq
Reverse (-)
61633850 .. 61635142
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0486700.1

Sequence Viewer

Length: 1293 bp
ATGCCGCAAGAGTTTGCAATGGAGGAGAGCAGAGGCAATCAACTCCCAGGCGAGAGGTTCTGCCCCATGGAGGACGAACTAGTTCTCTTCTACCTCAAGCCCATGTTGAGCGGACAGAAGGTGCCTGGCAGAAACCGCGTGGTATTTGACTGCGACCTCTACGGTCACCAAGAACCTTGGGAGATATGGGACGCCTACAAGACCAGAAGACCAAACGACTTGAGGCTCAACAAGGACATCTACTTCTTAACCCAACACAAGAAGATGAGTTCCACAGACAAGCGCGTACGCCGTACTGTTGGAAATGGCACCTGGAAGGGCGATGACTCCGGCAAGCCAGTAAAATCTTTGGAGACTGGTTGTGTGGTTGGCTTGAAGAAAAGATTTACTTACAAGAACAAAGCATCGGTGCACAACGGTTGTTGGATCTTGTATGAGTTCTACCTTGATCGATCACTCAGAGACAAGAAACAAAAGGTGAAAGACTATGTTCTTTGTCTACTACGAAAAAATGGTGAACCCCAAACCAAGATCGAAAAGAAGAGAAAGCAACGTGAAGAGGAAGAGGTTCTTGAACACAATTATGCTTATGATGATGTAGAAAACTATAGGGAGCAAGAAGAGTTTCTTGAGCCACAAGCGAAGCGACAACAAATTGTACCATCCATTGATAATGCAACAGTACCAATGCCATCAGAAGATGATGCATTCGCAGCTGAACTAGAAGGGTTATTGCCATGCTCTGAAGATGATAATATACCCTCAAGAGCTGAAGCAATTGGCTTTCAAGGTGAGGAGAATGGGGAAGTGCAACAATTAGCTTCCGAGATGCAATCATGCCCTTCATTTGGAGACTATCATGGAATATTTAATCCACTACCAGAGGAAGATTTTCTCTTGGAGGAAATGGTAGAAGAAATGGGTATGGTAGAAATGGAAGACCTGCTAGTTGTTAATGGTGCGACTAGTAATATGGATGTGGCGGAAGAAAACGTGCTAAACAGCACCCTTCTTCACACTCCCACATCATCCATGTCTGCGGCCTATGATGGCACTGATATGCCATATTTATCCATGAAAAATGGTTGCACTGATCCAGCTGGAAGCAACAATATTTGTGGAGGATCGATTGGCTTTCAGGGTGGTGCGTACTGGCCTGAGTCTTTAGTGGAGGTCCCAACTGAAGAGAAACAAAAGACAGCTGATGGAGATTGTTCAGATTGGTTGGACTCAATCAGTTTTAGTCCTGAGGAAAACAACTTCCTTTGGAGTGAAGTGCAATGGTGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

430

Amino Acids

48.99

Weight (kDa)

4.61

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 148 6e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccB1I GGYRCC 2 cut(s) 121, 308
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 499
AccII CGCG 2 cut(s) 138, 285
AciI CCGC 5 cut(s) 5, 111, 136, 983, 1040
AclWI GGATC 3 cut(s) 434, 1088, 1132
AcuI CTGAAG 3 cut(s) 765, 792, 1203
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 5 cut(s) 288, 295, 660, 684, 1151
AfiI CCNNNNNNNGG 2 cut(s) 70, 848
AgsI TTSAA 3 cut(s) 376, 575, 788
AhlI ACTAGT 2 cut(s) 79, 965
AjnI CCWGG 3 cut(s) 46, 124, 311
AluBI AGCT 5 cut(s) 716, 770, 821, 1100, 1202
AluI AGCT 5 cut(s) 716, 770, 821, 1100, 1202
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 3 cut(s) 347, 456, 846
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 3 cut(s) 434, 1088, 1132
AoxI GGCC 2 cut(s) 1041, 1154
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 713
Asp700I GAANNNNTTC 4 cut(s) 81, 567, 624, 891
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 1174
AsuHPI GGTGA 4 cut(s) 158, 490, 527, 803
AvaII GGWCC 1 cut(s) 1174
AxyI CCTNAGG 1 cut(s) 1248
BaeGI GKGCMC 1 cut(s) 414
BanI GGYRCC 2 cut(s) 121, 308
BbsI GAAGAC 2 cut(s) 214, 945
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 725
BccI CCATC 4 cut(s) 670, 700, 1043, 1199
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 3 cut(s) 48, 126, 313
BcoDI GTCTC 3 cut(s) 347, 456, 846
BcuI ACTAGT 2 cut(s) 79, 965
BfaI CTAG 4 cut(s) 80, 722, 947, 966
BfmI CTRYAG 1 cut(s) 607
BfuAI ACCTGC 1 cut(s) 951
BisI GCNGC 3 cut(s) 5, 714, 1041
BlsI GCNGC 3 cut(s) 6, 715, 1042
Bme1390I CCNGG 3 cut(s) 48, 126, 313
Bme18I GGWCC 1 cut(s) 1174
BmgT120I GGNCC 1 cut(s) 1174
BmiI GGNNCC 3 cut(s) 123, 310, 1176
BmrFI CCNGG 3 cut(s) 48, 126, 313
BmsI GCATC 3 cut(s) 413, 694, 819
BpiI GAAGAC 2 cut(s) 214, 945
BpuEI CTTGAG 4 cut(s) 80, 241, 650, 748
Bsa29I ATCGAT 2 cut(s) 451, 1127
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 46, 66, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 848
Bse1I ACTGG 3 cut(s) 338, 361, 1157
Bse21I CCTNAGG 1 cut(s) 1248
Bse3DI GCAATG 2 cut(s) 24, 1286
BseBI CCWGG 3 cut(s) 48, 126, 313
BseCI ATCGAT 2 cut(s) 451, 1127
BseDI CCNNGG 3 cut(s) 46, 66, 176
BseGI GGATG 3 cut(s) 662, 982, 1028
BseLI CCNNNNNNNGG 2 cut(s) 70, 848
BseMI GCAATG 2 cut(s) 24, 1286
BseMII CTCAG 3 cut(s) 472, 1149, 1239
BseNI ACTGG 3 cut(s) 338, 361, 1157
BseRI GAGGAG 2 cut(s) 38, 809
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 1 cut(s) 725
Bsh1236I CGCG 2 cut(s) 138, 285
BshFI GGCC 2 cut(s) 1043, 1156
BshNI GGYRCC 2 cut(s) 121, 308
BshVI ATCGAT 2 cut(s) 451, 1127
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 330
BsiWI CGTACG 1 cut(s) 286
BslFI GGGAC 2 cut(s) 203, 1160
BslI CCNNNNNNNGG 2 cut(s) 70, 848
BsmAI GTCTC 3 cut(s) 347, 456, 846
BsmFI GGGAC 2 cut(s) 203, 1160
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 2 cut(s) 1043, 1156
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 5 cut(s) 5, 111, 136, 983, 1040
BspANI GGCC 2 cut(s) 1043, 1156
BspCNI CTCAG 3 cut(s) 471, 1150, 1240
BspDI ATCGAT 2 cut(s) 451, 1127
BspFNI CGCG 2 cut(s) 138, 285
BspLI GGNNCC 3 cut(s) 123, 310, 1176
BspMI ACCTGC 1 cut(s) 951
BspPI GGATC 3 cut(s) 434, 1088, 1132
BspT107I GGYRCC 2 cut(s) 121, 308
BsrBI CCGCTC 1 cut(s) 111
BsrDI GCAATG 2 cut(s) 24, 1286
BsrI ACTGG 3 cut(s) 338, 361, 1157
BssECI CCNNGG 3 cut(s) 46, 66, 176
BssMI GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 66, 176
Bst2UI CCWGG 3 cut(s) 48, 126, 313
Bst4CI ACNGT 4 cut(s) 164, 298, 419, 682
Bst6I CTCTTC 6 cut(s) 92, 536, 552, 558, 615, 1179
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 3 cut(s) 458, 1158, 1248
BstDSI CCRYGG 1 cut(s) 66
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 3 cut(s) 662, 982, 1028
BstFNI CGCG 2 cut(s) 138, 285
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 6 cut(s) 429, 451, 455, 534, 1096, 1127
BstMAI GTCTC 3 cut(s) 347, 456, 846
BstMBI GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
BstMWI GCNNNNNNNGC 2 cut(s) 135, 713
BstNI CCWGG 3 cut(s) 48, 126, 313
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 46, 124, 311
BstSFI CTRYAG 1 cut(s) 607
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 2 cut(s) 138, 285
BstV1I GCAGC 1 cut(s) 725
BstV2I GAAGAC 2 cut(s) 214, 945
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
Bsu15I ATCGAT 2 cut(s) 451, 1127
Bsu36I CCTNAGG 1 cut(s) 1248
BsuRI GGCC 2 cut(s) 1043, 1156
BsuTUI ATCGAT 2 cut(s) 451, 1127
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 662, 982, 1028
BtsIMutI CAGTG 2 cut(s) 1053, 1089
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 1174
ClaI ATCGAT 2 cut(s) 451, 1127
CseI GACGC 1 cut(s) 200
Csp6I GTAC 5 cut(s) 287, 294, 659, 683, 1150
CspCI CAANNNNNGTGG 2 cut(s) 1099, 1134
CviAII CATG 7 cut(s) 67, 103, 738, 837, 860, 1033, 1075
CviQI GTAC 5 cut(s) 287, 294, 659, 683, 1150
DdeI CTNAG 3 cut(s) 458, 1158, 1248
DpnI GATC 6 cut(s) 428, 450, 454, 533, 1095, 1126
DpnII GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
Eam1104I CTCTTC 6 cut(s) 92, 536, 552, 558, 615, 1179
EarI CTCTTC 6 cut(s) 92, 536, 552, 558, 615, 1179
EciI GGCGGA 1 cut(s) 998
Eco130I CCWWGG 2 cut(s) 66, 176
Eco47I GGWCC 1 cut(s) 1174
Eco57I CTGAAG 3 cut(s) 765, 792, 1203
Eco81I CCTNAGG 1 cut(s) 1248
Eco91I GGTNACC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 1174
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 46, 124, 311
EcoT14I CCWWGG 2 cut(s) 66, 176
EcoT22I ATGCAT 1 cut(s) 709
ErhI CCWWGG 2 cut(s) 66, 176
FaeI CATG 7 cut(s) 70, 106, 741, 840, 863, 1036, 1078
FalI AAGNNNNNCTT 6 cut(s) 373, 405, 555, 587, 612, 644
FaqI GGGAC 2 cut(s) 203, 1160
FatI CATG 7 cut(s) 66, 102, 737, 836, 859, 1032, 1074
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 5, 714, 1041
FokI GGATG 3 cut(s) 649, 989, 1015
Fsp4HI GCNGC 3 cut(s) 5, 714, 1041
FspBI CTAG 4 cut(s) 80, 722, 947, 966
GlaI GCGC 1 cut(s) 284
GluI GCNGC 3 cut(s) 5, 714, 1041
HaeIII GGCC 2 cut(s) 1043, 1156
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 7 cut(s) 70, 106, 741, 840, 863, 1036, 1078
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 3 cut(s) 326, 1160, 1229
HpaII CCGG 1 cut(s) 330
HphI GGTGA 4 cut(s) 158, 490, 527, 803
Hpy166II GTNNAC 3 cut(s) 412, 500, 518
Hpy188I TCNGA 5 cut(s) 461, 697, 745, 826, 1219
Hpy188III TCNNGA 4 cut(s) 572, 629, 765, 1247
Hpy8I GTNNAC 3 cut(s) 412, 500, 518
HpyAV CCTTC 5 cut(s) 112, 310, 719, 852, 1019
HpyCH4III ACNGT 4 cut(s) 164, 298, 419, 682
HpyCH4IV ACGT 2 cut(s) 553, 993
HpyCH4V TGCA 8 cut(s) 17, 412, 677, 707, 811, 832, 1089, 1279
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 713
HpyF3I CTNAG 3 cut(s) 458, 1158, 1248
HpySE526I ACGT 2 cut(s) 553, 993
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 7 cut(s) 70, 106, 741, 840, 863, 1036, 1078
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 1 cut(s) 725
LweI GCATC 3 cut(s) 413, 694, 819
MaeI CTAG 4 cut(s) 80, 722, 947, 966
MaeII ACGT 2 cut(s) 553, 993
MaeIII GTNAC 1 cut(s) 164
MalI GATC 6 cut(s) 428, 450, 454, 533, 1095, 1126
MbiI CCGCTC 1 cut(s) 111
MboI GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 580, 654, 777, 815
MlyI GAGTC 3 cut(s) 320, 1169, 1223
MmeI TCCRAC 3 cut(s) 280, 404, 1206
Mph1103I ATGCAT 1 cut(s) 709
MroXI GAANNNNTTC 4 cut(s) 81, 567, 624, 891
MseI TTAA 3 cut(s) 248, 870, 954
MslI CAYNNNNRTG 2 cut(s) 582, 1058
MspA1I CMGCKG 3 cut(s) 716, 1100, 1202
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 3 cut(s) 48, 126, 313
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 3 cut(s) 48, 126, 313
MvnI CGCG 2 cut(s) 138, 285
MwoI GCNNNNNNNGC 2 cut(s) 135, 713
NcoI CCATGG 1 cut(s) 66
NdeII GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
NlaIII CATG 7 cut(s) 70, 106, 741, 840, 863, 1036, 1078
NlaIV GGNNCC 3 cut(s) 123, 310, 1176
NmuCI GTSAC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 709
PctI GAATGC 1 cut(s) 707
PdmI GAANNNNTTC 4 cut(s) 81, 567, 624, 891
Pfl23II CGTACG 1 cut(s) 286
PkrI GCNGC 3 cut(s) 6, 715, 1042
PleI GAGTC 3 cut(s) 320, 1168, 1223
PpsI GAGTC 3 cut(s) 320, 1168, 1223
PpuMI RGGWCCY 1 cut(s) 1174
Psp5II RGGWCCY 1 cut(s) 1174
Psp6I CCWGG 3 cut(s) 46, 124, 311
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 3 cut(s) 46, 124, 311
PspLI CGTACG 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 123, 310, 1176
PspPI GGNCC 1 cut(s) 1174
PspPPI RGGWCCY 1 cut(s) 1174
PsuI RGATCY 1 cut(s) 426
PvuII CAGCTG 3 cut(s) 716, 1100, 1202
RsaI GTAC 5 cut(s) 288, 295, 660, 684, 1151
RsaNI GTAC 5 cut(s) 287, 294, 659, 683, 1150
RseI CAYNNNNRTG 2 cut(s) 582, 1058
SaqAI TTAA 3 cut(s) 248, 870, 954
SatI GCNGC 3 cut(s) 5, 714, 1041
Sau3AI GATC 6 cut(s) 426, 448, 452, 531, 1093, 1124
Sau96I GGNCC 1 cut(s) 1174
SchI GAGTC 3 cut(s) 320, 1169, 1223
ScrFI CCNGG 3 cut(s) 48, 126, 313
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 3 cut(s) 413, 694, 819
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 1 cut(s) 1174
SmiMI CAYNNNNRTG 2 cut(s) 582, 1058
SmlI CTYRAG 4 cut(s) 95, 220, 629, 763
SmoI CTYRAG 4 cut(s) 95, 220, 629, 763
SpeI ACTAGT 2 cut(s) 79, 965
Sse9I AATT 4 cut(s) 580, 654, 777, 815
SsiI CCGC 5 cut(s) 5, 111, 136, 983, 1040
SspI AATATT 2 cut(s) 867, 1114
SspMI CTAG 4 cut(s) 80, 722, 947, 966
StyD4I CCNGG 3 cut(s) 46, 124, 311
StyI CCWWGG 2 cut(s) 66, 176
TaaI ACNGT 4 cut(s) 164, 298, 419, 682
TaiI ACGT 2 cut(s) 556, 996
TaqI TCGA 3 cut(s) 451, 534, 1127
TasI AATT 4 cut(s) 580, 654, 777, 815
TauI GCSGC 2 cut(s) 7, 1043
Tru1I TTAA 3 cut(s) 248, 870, 954
Tru9I TTAA 3 cut(s) 248, 870, 954
TscAI CASTG 2 cut(s) 1060, 1096
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 834, 1091
TspRI CASTG 2 cut(s) 1060, 1096
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 1174
XmiI GTMKAC 1 cut(s) 499
XmnI GAANNNNTTC 4 cut(s) 81, 567, 624, 891
XspI CTAG 4 cut(s) 80, 722, 947, 966
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.