Rw0G008360

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00317
OG0001958
Physical Location & Seq
Reverse (-)
34303 .. 36702
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008360.1

Sequence Viewer

Length: 711 bp
ATGGCTTCTCCGAAGAAGAGCCCATCATCATCATCATCTTCAGAACCAGAGCGTCAGCACTCCGGCTCGGCGATCGTAGTCCAACCCTCCTCCCCTCGCTTCCCTCCCAGCGGCACCCCCACCTCTGGCGCCCAGCGCCGCATCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTCAAGTGGGCCGTCCAAAACTACCTCCGCCCCGGCGACGCCGTCGTCCTCCTCCACGTCCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCATCCCCAACGACGAGGCCTCCCAGCAGAAACTCGAGTCCGATTTCGACAACTTCACCATCACCAAGGCCACCGACGTCTCCAAGCCTCTCGAGGAGGCTCGGATCCCCTACAAGATCCACATAGTGAAGGACCACGATATGAAGGAGCGTCTCTGCTTGGAGGTCGAGCGCCTCGGCCTGGTCGCCGTCATTATGGGCAGCCGGGGGTTCGGAGCCACCAAGCGGAGCTCCAACGCCAGGCTCGGTAGTGTTAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATCGTCGTTAGGTTTTCCGATGACAAGGACGGAGACGACCTCGTAAAGCCGGCGAGGTTCGACTCTGTTCACGGGGACGAGCCGGAGTTCCATGACGCTTTGGATAAAGATACGGATAAGGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

236

Amino Acids

25.76

Weight (kDa)

5.75

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 46 - 198 1.2e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 2 cut(s) 291, 372
AccB1I GGYRCC 4 cut(s) 113, 128, 266, 278
AciI CCGC 5 cut(s) 111, 139, 211, 244, 517
AclWI GGATC 4 cut(s) 155, 391, 403, 404
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 6 cut(s) 129, 222, 267, 279, 288, 369
AdeI CACNNNGTG 1 cut(s) 418
AfiI CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 471, 530
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
Alw21I GWGCWC 2 cut(s) 524, 564
Alw26I GTCTC 4 cut(s) 295, 376, 449, 609
Alw44I GTGCAC 1 cut(s) 560
AlwI GGATC 4 cut(s) 155, 391, 403, 404
Ama87I CYCGRG 2 cut(s) 326, 383
AoxI GGCC 4 cut(s) 192, 309, 360, 469
ApaLI GTGCAC 1 cut(s) 560
ApeKI GCWGC 1 cut(s) 492
AspLEI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
AspS9I GGNCC 2 cut(s) 192, 424
AsuC2I CCSGG 2 cut(s) 216, 497
AsuHPI GGTGA 2 cut(s) 340, 346
AvaI CYCGRG 2 cut(s) 326, 383
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 564
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 4 cut(s) 113, 128, 266, 278
BanII GRGCYC 2 cut(s) 23, 524
Bbv12I GWGCWC 2 cut(s) 524, 564
BbvI GCAGC 1 cut(s) 504
BccI CCATC 3 cut(s) 31, 302, 359
BceAI ACGGC 6 cut(s) 137, 167, 179, 209, 280, 464
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 2 cut(s) 473, 532
BcnI CCSGG 2 cut(s) 216, 497
BcoDI GTCTC 4 cut(s) 295, 376, 449, 609
BfoI RGCGCY 6 cut(s) 132, 139, 177, 270, 282, 466
BisI GCNGC 3 cut(s) 112, 139, 493
BlsI GCNGC 3 cut(s) 113, 140, 494
Bme1390I CCNGG 4 cut(s) 216, 473, 497, 532
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 2 cut(s) 326, 383
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 192, 424
BmiI GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
BmrFI CCNGG 4 cut(s) 216, 473, 497, 532
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 283
BplI GAGNNNNNCTC 2 cut(s) 606, 638
BpuMI CCSGG 2 cut(s) 216, 497
BsaHI GRCGYC 6 cut(s) 129, 222, 267, 279, 288, 369
BsaJI CCNNGG 4 cut(s) 214, 357, 466, 496
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 278
BseBI CCWGG 2 cut(s) 473, 532
BseDI CCNNGG 4 cut(s) 214, 357, 466, 496
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 3 cut(s) 79, 224, 401
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 504
BseYI CCCAGC 3 cut(s) 107, 132, 315
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 194, 311, 362, 471
BshNI GGYRCC 4 cut(s) 113, 128, 266, 278
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 524, 564
BsiHKCI CYCGRG 2 cut(s) 326, 383
BsiSI CCGG 6 cut(s) 63, 216, 496, 578, 632, 665
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
BsmAI GTCTC 4 cut(s) 295, 376, 449, 609
BsmBI CGTCTC 4 cut(s) 295, 376, 449, 609
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 4 cut(s) 194, 311, 362, 471
BsoBI CYCGRG 2 cut(s) 326, 383
Bsp1286I GDGCHC 3 cut(s) 23, 524, 564
Bsp143I GATC 5 cut(s) 72, 147, 157, 396, 408
BspACI CCGC 5 cut(s) 111, 139, 211, 244, 517
BspANI GGCC 4 cut(s) 194, 311, 362, 471
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
BspPI GGATC 4 cut(s) 155, 391, 403, 404
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 4 cut(s) 113, 128, 266, 278
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 4 cut(s) 214, 357, 466, 496
BssMI GATC 5 cut(s) 72, 147, 157, 396, 408
BssNI GRCGYC 6 cut(s) 129, 222, 267, 279, 288, 369
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 473, 532
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 6 cut(s) 129, 222, 267, 279, 288, 369
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 294
BstH2I RGCGCY 6 cut(s) 132, 139, 177, 270, 282, 466
BstHHI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
BstKTI GATC 5 cut(s) 75, 150, 160, 399, 411
BstMAI GTCTC 4 cut(s) 295, 376, 449, 609
BstMBI GATC 5 cut(s) 72, 147, 157, 396, 408
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 135, 171, 252
BstNI CCWGG 2 cut(s) 473, 532
BstSCI CCNGG 4 cut(s) 214, 471, 495, 530
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 504
BstX2I RGATCY 2 cut(s) 396, 408
BstYI RGATCY 2 cut(s) 396, 408
BsuRI GGCC 4 cut(s) 194, 311, 362, 471
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 633
CfoI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 2 cut(s) 192, 424
CseI GACGC 6 cut(s) 41, 230, 244, 431, 559, 686
CviAII CATG 1 cut(s) 674
DdeI CTNAG 1 cut(s) 161
DinI GGCGCC 3 cut(s) 130, 268, 280
DpnI GATC 5 cut(s) 74, 149, 159, 398, 410
DpnII GATC 5 cut(s) 72, 147, 157, 396, 408
DraIII CACNNNGTG 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 2 cut(s) 200, 233
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 311
Eco24I GRGCYC 2 cut(s) 23, 524
Eco47I GGWCC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 326, 383
EcoICRI GAGCTC 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 471, 530
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 23, 524
EgeI GGCGCC 3 cut(s) 130, 268, 280
EheI GGCGCC 3 cut(s) 130, 268, 280
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 4 cut(s) 295, 376, 449, 609
FaeI CATG 1 cut(s) 677
FaiI YATR 4 cut(s) 416, 434, 488, 675
FaqI GGGAC 1 cut(s) 671
FatI CATG 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 112, 139, 493
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 2 cut(s) 23, 524
Fsp4HI GCNGC 3 cut(s) 112, 139, 493
GlaI GCGC 6 cut(s) 130, 137, 175, 268, 280, 464
GluI GCNGC 3 cut(s) 112, 139, 493
GsaI CCCAGC 3 cut(s) 111, 136, 319
HaeII RGCGCY 6 cut(s) 132, 139, 177, 270, 282, 466
HaeIII GGCC 4 cut(s) 194, 311, 362, 471
HapII CCGG 6 cut(s) 63, 216, 496, 578, 632, 665
HgaI GACGC 6 cut(s) 41, 230, 244, 431, 559, 686
HhaI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
Hin1I GRCGYC 6 cut(s) 129, 222, 267, 279, 288, 369
Hin1II CATG 1 cut(s) 677
Hin6I GCGC 6 cut(s) 129, 136, 174, 267, 279, 463
HinP1I GCGC 6 cut(s) 129, 136, 174, 267, 279, 463
HinfI GANTC 2 cut(s) 329, 644
HpaII CCGG 6 cut(s) 63, 216, 496, 578, 632, 665
HphI GGTGA 2 cut(s) 340, 346
Hpy166II GTNNAC 2 cut(s) 562, 652
Hpy188I TCNGA 6 cut(s) 12, 43, 334, 396, 506, 601
Hpy188III TCNNGA 2 cut(s) 145, 383
Hpy8I GTNNAC 2 cut(s) 562, 652
Hpy99I CGWCG 8 cut(s) 158, 170, 224, 230, 290, 308, 371, 590
HpyAV CCTTC 3 cut(s) 187, 415, 430
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 3 cut(s) 240, 288, 369
HpyCH4V TGCA 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 171, 252
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 3 cut(s) 240, 288, 369
Hsp92I GRCGYC 6 cut(s) 129, 222, 267, 279, 288, 369
Hsp92II CATG 1 cut(s) 677
HspAI GCGC 6 cut(s) 129, 136, 174, 267, 279, 463
KasI GGCGCC 3 cut(s) 128, 266, 278
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
Kzo9I GATC 5 cut(s) 72, 147, 157, 396, 408
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 4 cut(s) 439, 506, 519, 527
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 1 cut(s) 150
MaeII ACGT 3 cut(s) 240, 288, 369
MaeIII GTNAC 1 cut(s) 548
MalI GATC 5 cut(s) 74, 149, 159, 398, 410
MboI GATC 5 cut(s) 72, 147, 157, 396, 408
MboII GAAGA 3 cut(s) 25, 28, 30
MflI RGATCY 2 cut(s) 396, 408
MhlI GDGCHC 3 cut(s) 23, 524, 564
Mly113I GGCGCC 3 cut(s) 129, 267, 279
MlyI GAGTC 2 cut(s) 338, 638
MmeI TCCRAC 2 cut(s) 106, 549
MroNI GCCGGC 1 cut(s) 631
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 6 cut(s) 63, 216, 496, 578, 632, 665
MspR9I CCNGG 4 cut(s) 216, 473, 497, 532
MvaI CCWGG 2 cut(s) 473, 532
MwoI GCNNNNNNNGC 3 cut(s) 135, 171, 252
NaeI GCCGGC 1 cut(s) 633
NarI GGCGCC 3 cut(s) 129, 267, 279
NciI CCSGG 2 cut(s) 216, 497
NdeII GATC 5 cut(s) 72, 147, 157, 396, 408
NgoMIV GCCGGC 1 cut(s) 631
NlaIII CATG 1 cut(s) 677
NlaIV GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
NmeAIII GCCGAG 2 cut(s) 47, 447
NmuCI GTSAC 1 cut(s) 548
PaeR7I CTCGAG 2 cut(s) 326, 383
PceI AGGCCT 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 162
PdiI GCCGGC 1 cut(s) 633
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 113, 140, 494
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 337, 638
PluTI GGCGCC 3 cut(s) 132, 270, 282
PpsI GAGTC 2 cut(s) 337, 638
Psp124BI GAGCTC 1 cut(s) 524
Psp6I CCWGG 2 cut(s) 471, 530
PspFI CCCAGC 3 cut(s) 107, 132, 315
PspGI CCWGG 2 cut(s) 471, 530
PspN4I GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
PspPI GGNCC 2 cut(s) 192, 424
PspXI VCTCGAGB 1 cut(s) 326
PsuI RGATCY 2 cut(s) 396, 408
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 3 cut(s) 112, 139, 493
Sau3AI GATC 5 cut(s) 72, 147, 157, 396, 408
Sau96I GGNCC 2 cut(s) 192, 424
SchI GAGTC 2 cut(s) 338, 638
ScrFI CCNGG 4 cut(s) 216, 473, 497, 532
SduI GDGCHC 3 cut(s) 23, 524, 564
SfaNI GCATC 1 cut(s) 150
SfoI GGCGCC 3 cut(s) 130, 268, 280
Sfr274I CTCGAG 2 cut(s) 326, 383
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 2 cut(s) 326, 383
SmlI CTYRAG 2 cut(s) 326, 383
SmoI CTYRAG 2 cut(s) 326, 383
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 5 cut(s) 111, 139, 211, 244, 517
SspDI GGCGCC 3 cut(s) 128, 266, 278
SstI GAGCTC 1 cut(s) 524
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 4 cut(s) 214, 471, 495, 530
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 3 cut(s) 243, 291, 372
TaqI TCGA 6 cut(s) 156, 327, 339, 384, 459, 642
TauI GCSGC 2 cut(s) 114, 141
TscAI CASTG 1 cut(s) 572
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 2 cut(s) 627, 710
TspRI CASTG 1 cut(s) 572
Tth111I GACNNNGTC 1 cut(s) 224
VneI GTGCAC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 424
XhoI CTCGAG 2 cut(s) 326, 383
ZraI GACGTC 2 cut(s) 289, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.