pycom09g02270

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001958
Physical Location & Seq
Forward (+)
1736591 .. 1737361
771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02270.1

Sequence Viewer

Length: 693 bp
ATGAACCAGCCACCGCCCGTACACATCCAACCATCCTCCCCGCGGCTAACCAACACGATCACCCCAACACCTGATGGAACCCACCGGAAGGTCGCGATCGCCGTCGATTTAAGCGAGGAGAGCGCCTTTGCCGTCCGATGGGCCGTCCAGAACTACCTTCGACCGGGGGACTCTGTCGTCCTCCTCCACGTGCGACCCACCAGCGTCCTCTACGGCGCCGACTGGGGCTCTGTCGACCCCAACGACGCCGTCTCCTCCTCATCCGAGTCGCAGCAGAAATTGGAGGACGACTTCGACGCCTTCACCACCACCAAGGCAGCGGACCTGGCGCAGCCGTTAGTGGAGGCGCAATTTCCGTTTAAAATCCACATAGTGAAGGACCACGATATGAAGGAGCGGCTCTGCTTGGAAGTCGAGAGGCTCTGGCTCAGCGTCGTCATCATGGGCAGCCGCGGCTTCGGCGCCACCAAGCGTGCCGCAAAGGTCGGCAGGCTCGGCAGCGTCACTGATTACTGCGTGCAACACTGTGTCTGTCCAGTTGTGGTTGTGAGGTATCCTGATGACTCGGACAGGTCGGGCGCTGGCGGTGAACCCGATGGCCCGGTGGAGCTCCACCCGGTGCCGGAAGAGGACCCGGAGGAATTCAACAACGGTTCCTCCTCCGATAACAATGACGCTCATGAAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

231

Amino Acids

25.13

Weight (kDa)

4.8

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 29 - 184 2.6e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB1I GGYRCC 3 cut(s) 215, 461, 619
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 234
AccII CGCG 3 cut(s) 43, 95, 453
AciI CCGC 9 cut(s) 14, 41, 43, 320, 397, 451, 453, 477, 585
AcsI RAATTY 1 cut(s) 641
AcvI CACGTG 1 cut(s) 190
AcyI GRCGYC 4 cut(s) 216, 246, 297, 462
AdeI CACNNNGTG 2 cut(s) 373, 619
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 5 cut(s) 42, 88, 138, 163, 622
AgsI TTSAA 2 cut(s) 646, 689
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 1 cut(s) 610
AluI AGCT 1 cut(s) 610
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 2 cut(s) 141, 598
ApeKI GCWGC 5 cut(s) 271, 317, 331, 447, 498
ApoI RAATTY 1 cut(s) 641
AsiSI GCGATCGC 1 cut(s) 99
AspLEI GCGC 6 cut(s) 125, 218, 331, 349, 464, 581
AspS9I GGNCC 5 cut(s) 141, 322, 379, 599, 631
AsuC2I CCSGG 4 cut(s) 165, 602, 617, 635
AsuHPI GGTGA 3 cut(s) 52, 295, 599
AvaII GGWCC 3 cut(s) 322, 379, 631
BanI GGYRCC 3 cut(s) 215, 461, 619
BanII GRGCYC 2 cut(s) 230, 612
BbrPI CACGTG 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 5 cut(s) 283, 329, 343, 459, 510
BccI CCATC 4 cut(s) 40, 68, 132, 590
BceAI ACGGC 6 cut(s) 86, 116, 128, 229, 233, 319
BciT130I CCWGG 1 cut(s) 326
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 4 cut(s) 165, 602, 617, 635
BcoDI GTCTC 1 cut(s) 256
BfoI RGCGCY 4 cut(s) 126, 219, 465, 582
BfuI GTATCC 1 cut(s) 564
BlpI GCTNAGC 1 cut(s) 428
Bme1390I CCNGG 5 cut(s) 165, 326, 602, 617, 635
Bme18I GGWCC 3 cut(s) 322, 379, 631
BmgT120I GGNCC 5 cut(s) 141, 322, 379, 599, 631
BmiI GGNNCC 6 cut(s) 79, 217, 463, 621, 633, 655
BmrFI CCNGG 5 cut(s) 165, 326, 602, 617, 635
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
Bpu1102I GCTNAGC 1 cut(s) 428
BpuMI CCSGG 4 cut(s) 165, 602, 617, 635
BsaAI YACGTR 1 cut(s) 190
BsaHI GRCGYC 4 cut(s) 216, 246, 297, 462
BsaJI CCNNGG 4 cut(s) 41, 164, 312, 451
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 641, 671
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 88, 138, 163, 622
Bse1I ACTGG 2 cut(s) 227, 536
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 4 cut(s) 41, 164, 312, 451
BseGI GGATG 3 cut(s) 24, 32, 260
BseLI CCNNNNNNNGG 5 cut(s) 42, 88, 138, 163, 622
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 227, 536
BseRI GAGGAG 5 cut(s) 131, 173, 244, 247, 649
BseXI GCAGC 5 cut(s) 283, 329, 343, 459, 510
Bsh1236I CGCG 3 cut(s) 43, 95, 453
Bsh1285I CGRYCG 2 cut(s) 99, 164
BshFI GGCC 2 cut(s) 143, 600
BshNI GGYRCC 3 cut(s) 215, 461, 619
BsiEI CGRYCG 2 cut(s) 99, 164
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 6 cut(s) 85, 164, 602, 617, 623, 635
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 5 cut(s) 42, 88, 138, 163, 622
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 143, 600
Bsp1286I GDGCHC 2 cut(s) 230, 612
Bsp143I GATC 2 cut(s) 57, 96
Bsp1720I GCTNAGC 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 9 cut(s) 14, 41, 43, 320, 397, 451, 453, 477, 585
BspANI GGCC 2 cut(s) 143, 600
BspCNI CTCAG 1 cut(s) 441
BspFNI CGCG 3 cut(s) 43, 95, 453
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 6 cut(s) 79, 217, 463, 621, 633, 655
BspT107I GGYRCC 3 cut(s) 215, 461, 619
BsrBI CCGCTC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 227, 536
BssECI CCNNGG 4 cut(s) 41, 164, 312, 451
BssMI GATC 2 cut(s) 57, 96
BssNI GRCGYC 4 cut(s) 216, 246, 297, 462
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 527, 653
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 4 cut(s) 216, 246, 297, 462
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 4 cut(s) 474, 491, 518, 583
BstDEI CTNAG 1 cut(s) 428
BstDSI CCRYGG 2 cut(s) 41, 451
BstF5I GGATG 3 cut(s) 24, 32, 260
BstFNI CGCG 3 cut(s) 43, 95, 453
BstH2I RGCGCY 4 cut(s) 126, 219, 465, 582
BstHHI GCGC 6 cut(s) 125, 218, 331, 349, 464, 581
BstKTI GATC 2 cut(s) 60, 99
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 57, 96
BstMCI CGRYCG 2 cut(s) 99, 164
BstMWI GCNNNNNNNGC 5 cut(s) 120, 326, 453, 459, 495
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 5 cut(s) 163, 324, 600, 615, 633
BstUI CGCG 3 cut(s) 43, 95, 453
BstV1I GCAGC 5 cut(s) 283, 329, 343, 459, 510
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 2 cut(s) 143, 600
BtgI CCRYGG 2 cut(s) 41, 451
BtsCI GGATG 3 cut(s) 24, 32, 260
BtsIMutI CAGTG 2 cut(s) 504, 523
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 474, 491, 518, 583
CciI TCATGA 1 cut(s) 679
CfoI GCGC 6 cut(s) 125, 218, 331, 349, 464, 581
Cfr13I GGNCC 5 cut(s) 141, 322, 379, 599, 631
Cfr42I CCGCGG 2 cut(s) 44, 454
CseI GACGC 6 cut(s) 193, 254, 305, 421, 490, 683
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 442, 680
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 428
DinI GGCGCC 2 cut(s) 217, 463
DpnI GATC 2 cut(s) 59, 98
DpnII GATC 2 cut(s) 57, 96
DraI TTTAAA 1 cut(s) 361
DraIII CACNNNGTG 2 cut(s) 373, 619
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 230, 612
Eco47I GGWCC 3 cut(s) 322, 379, 631
Eco53kI GAGCTC 1 cut(s) 610
Eco72I CACGTG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 230, 612
EgeI GGCGCC 2 cut(s) 217, 463
EheI GGCGCC 2 cut(s) 217, 463
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 445, 683
FaiI YATR 4 cut(s) 371, 389, 443, 681
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 441, 679
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 234
FokI GGATG 3 cut(s) 11, 19, 247
FriOI GRGCYC 2 cut(s) 230, 612
GlaI GCGC 6 cut(s) 124, 217, 330, 348, 463, 580
HaeII RGCGCY 4 cut(s) 126, 219, 465, 582
HaeIII GGCC 2 cut(s) 143, 600
HapII CCGG 6 cut(s) 85, 164, 602, 617, 623, 635
HgaI GACGC 6 cut(s) 193, 254, 305, 421, 490, 683
HhaI GCGC 6 cut(s) 125, 218, 331, 349, 464, 581
Hin1I GRCGYC 4 cut(s) 216, 246, 297, 462
Hin1II CATG 2 cut(s) 445, 683
Hin6I GCGC 6 cut(s) 123, 216, 329, 347, 462, 579
HinP1I GCGC 6 cut(s) 123, 216, 329, 347, 462, 579
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 170, 266, 563
HpaII CCGG 6 cut(s) 85, 164, 602, 617, 623, 635
HphI GGTGA 3 cut(s) 52, 295, 599
Hpy166II GTNNAC 3 cut(s) 22, 235, 590
Hpy188I TCNGA 4 cut(s) 137, 265, 568, 664
Hpy188III TCNNGA 5 cut(s) 94, 148, 415, 557, 680
Hpy8I GTNNAC 3 cut(s) 22, 235, 590
Hpy99I CGWCG 4 cut(s) 107, 248, 299, 437
HpyAV CCTTC 5 cut(s) 82, 167, 310, 370, 385
HpyCH4III ACNGT 2 cut(s) 527, 653
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 520
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 326, 453, 459, 495
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 4 cut(s) 216, 246, 297, 462
Hsp92II CATG 2 cut(s) 445, 683
HspAI GCGC 6 cut(s) 123, 216, 329, 347, 462, 579
KasI GGCGCC 2 cut(s) 215, 461
KspI CCGCGG 2 cut(s) 44, 454
Kzo9I GATC 2 cut(s) 57, 96
LmnI GCTCC 3 cut(s) 394, 607, 615
Lsp1109I GCAGC 5 cut(s) 283, 329, 343, 459, 510
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 502
MalI GATC 2 cut(s) 59, 98
MbiI CCGCTC 1 cut(s) 397
MboI GATC 2 cut(s) 57, 96
MboII GAAGA 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 230, 612
MluCI AATT 3 cut(s) 278, 350, 641
Mly113I GGCGCC 2 cut(s) 216, 462
MlyI GAGTC 3 cut(s) 164, 275, 557
MmeI TCCRAC 1 cut(s) 52
MseI TTAA 2 cut(s) 110, 360
MspA1I CMGCKG 3 cut(s) 43, 320, 453
MspI CCGG 6 cut(s) 85, 164, 602, 617, 623, 635
MspR9I CCNGG 5 cut(s) 165, 326, 602, 617, 635
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 3 cut(s) 43, 95, 453
MwoI GCNNNNNNNGC 5 cut(s) 120, 326, 453, 459, 495
NarI GGCGCC 2 cut(s) 216, 462
NciI CCSGG 4 cut(s) 165, 602, 617, 635
NdeII GATC 2 cut(s) 57, 96
NlaIII CATG 2 cut(s) 445, 683
NlaIV GGNNCC 6 cut(s) 79, 217, 463, 621, 633, 655
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 502
NruI TCGCGA 1 cut(s) 95
PagI TCATGA 1 cut(s) 679
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 111, 240
PflFI GACNNNGTC 2 cut(s) 173, 248
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 3 cut(s) 164, 274, 557
PluTI GGCGCC 2 cut(s) 219, 465
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
PpsI GAGTC 3 cut(s) 164, 274, 557
Ppu21I YACGTR 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 631
Psp124BI GAGCTC 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 324
PspCI CACGTG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 6 cut(s) 79, 217, 463, 621, 633, 655
PspPI GGNCC 5 cut(s) 141, 322, 379, 599, 631
PspPPI RGGWCCY 1 cut(s) 631
PsyI GACNNNGTC 2 cut(s) 173, 248
PvuI CGATCG 1 cut(s) 99
RgaI GCGATCGC 1 cut(s) 99
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SacI GAGCTC 1 cut(s) 612
SacII CCGCGG 2 cut(s) 44, 454
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 110, 360
Sau3AI GATC 2 cut(s) 57, 96
Sau96I GGNCC 5 cut(s) 141, 322, 379, 599, 631
SchI GAGTC 3 cut(s) 164, 275, 557
ScrFI CCNGG 5 cut(s) 165, 326, 602, 617, 635
SduI GDGCHC 2 cut(s) 230, 612
SetI ASST 9 cut(s) 73, 93, 159, 192, 327, 486, 554, 575, 612
SfaAI GCGATCGC 1 cut(s) 99
SfoI GGCGCC 2 cut(s) 217, 463
Sfr303I CCGCGG 2 cut(s) 44, 454
SgfI GCGATCGC 1 cut(s) 99
SgrBI CCGCGG 2 cut(s) 44, 454
SinI GGWCC 3 cut(s) 322, 379, 631
Sse9I AATT 3 cut(s) 278, 350, 641
SsiI CCGC 9 cut(s) 14, 41, 43, 320, 397, 451, 453, 477, 585
SspDI GGCGCC 2 cut(s) 215, 461
SstI GAGCTC 1 cut(s) 612
StyD4I CCNGG 5 cut(s) 163, 324, 600, 615, 633
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 527, 653
TaiI ACGT 1 cut(s) 192
TaqI TCGA 5 cut(s) 105, 160, 234, 294, 414
TasI AATT 3 cut(s) 278, 350, 641
TauI GCSGC 5 cut(s) 46, 400, 453, 456, 479
Tru1I TTAA 2 cut(s) 110, 360
Tru9I TTAA 2 cut(s) 110, 360
TscAI CASTG 2 cut(s) 511, 530
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 5 cut(s) 271, 317, 331, 447, 498
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 2 cut(s) 17, 404
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 511, 530
Tth111I GACNNNGTC 2 cut(s) 173, 248
VpaK11BI GGWCC 3 cut(s) 322, 379, 631
XapI RAATTY 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.