Rroxscaffold_2G00089070

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001958
Physical Location & Seq
Forward (+)
10947756 .. 10948424
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089070.1

Sequence Viewer

Length: 669 bp
ATGAACCCTCCCGCCGTACCCAGCCAACCCTCCTCCCCTCTCTTCCCGCTCTCGCCCAGTCCCCACCGCAAGGTCGCGATCGCCGTCGATTTAAGCGACGAGAGCGCCTACGCCGTCCGGTGGGCGGCCGAGCAGTACCTCCGACCCGGCGACGCCGTCGTCCTCCTCCACGTGCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCTGGGTCCCCGTCGACTACACCCTCCCCGTCGCCGGCGACAAGAAATCGGAGGACGACTTCGACGCGTTGACCACGGCCAAGGCGACGGAGCTGGCGCGGCCGCTCGTGGAGGCCGGAATCGAGTTCAAAATCCACATAGTGAAGGATCGCGACATGAAGGAGAGGCTGTGCTTGGAGGTGGAGAGGCTCGGGCTCAGCGCCGTCATTATGGGCAGCCGAGGGTTCGGCGCCGCCTCCAAGAGGAGCCTCAAGATGGCGAGGCTCGGAAGCGTATCGGATTACTGTGTGCAGCACTGTGTGTGTCCCGTCGTGGTGGTGAGGTGTCCTGATGACGTGGAGCGGAGGTTTGGCGGCGATGGTGGTGGTAGCGAAGCGGCGGAGGACGTTCTGCTTCCGGTGCCGGAGGAGGACCAGGAGGACAATGAGGACGGTGAGCCTCGAGGTTTGGCTCTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

222

Amino Acids

24.05

Weight (kDa)

4.79

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 23 - 177 2.7e-26 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AbsI CCTCGAGG 1 cut(s) 648
AccB1I GGYRCC 3 cut(s) 197, 437, 607
AccBSI CCGCTC 3 cut(s) 49, 313, 550
AccI GTMKAC 1 cut(s) 222
AccII CGCG 4 cut(s) 77, 275, 307, 360
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 3 cut(s) 126, 285, 308
AcvI CACGTG 1 cut(s) 172
AcyI GRCGYC 3 cut(s) 153, 198, 438
AdeI CACNNNGTG 2 cut(s) 349, 508
AfaI GTAC 2 cut(s) 18, 137
AfiI CCNNNNNNNGG 6 cut(s) 70, 120, 124, 242, 450, 463
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 2 cut(s) 398, 648
AoxI GGCC 4 cut(s) 126, 285, 308, 321
ApeKI GCWGC 2 cut(s) 423, 499
AsiSI GCGATCGC 1 cut(s) 81
AspLEI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
AspS9I GGNCC 2 cut(s) 214, 619
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 538, 653
AvaI CYCGRG 2 cut(s) 398, 648
AvaII GGWCC 2 cut(s) 214, 619
BanI GGYRCC 3 cut(s) 197, 437, 607
BanII GRGCYC 1 cut(s) 405
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 172
BbvI GCAGC 2 cut(s) 435, 511
BccI CCATC 2 cut(s) 457, 560
BceAI ACGGC 6 cut(s) 68, 98, 140, 211, 300, 395
BciT130I CCWGG 1 cut(s) 623
BcnI CCSGG 1 cut(s) 147
BfoI RGCGCY 4 cut(s) 108, 201, 411, 441
BisI GCNGC 8 cut(s) 126, 308, 311, 424, 441, 500, 562, 585
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 8 cut(s) 127, 309, 312, 425, 442, 501, 563, 586
Bme1390I CCNGG 2 cut(s) 147, 623
Bme18I GGWCC 2 cut(s) 214, 619
BmeT110I CYCGRG 2 cut(s) 398, 648
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 214, 619
BmiI GGNNCC 6 cut(s) 199, 215, 216, 439, 455, 609
BmrFI CCNGG 2 cut(s) 147, 623
BmrI ACTGGG 2 cut(s) 51, 214
BmuI ACTGGG 2 cut(s) 51, 214
Bpu1102I GCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 3 cut(s) 153, 198, 438
BsaJI CCNNGG 3 cut(s) 282, 288, 427
BsaWI WCCGGW 2 cut(s) 117, 604
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 539, 569
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 120, 124, 242, 450, 463
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 57, 209
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 282, 288, 427
BseLI CCNNNNNNNGG 6 cut(s) 70, 120, 124, 242, 450, 463
BseMII CTCAG 1 cut(s) 418
BseNI ACTGG 2 cut(s) 57, 209
BseRI GAGGAG 4 cut(s) 22, 155, 466, 629
BseX3I CGGCCG 2 cut(s) 126, 308
BseXI GCAGC 2 cut(s) 435, 511
BseYI CCCAGC 2 cut(s) 20, 210
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 4 cut(s) 77, 275, 307, 360
Bsh1285I CGRYCG 3 cut(s) 81, 129, 311
BshFI GGCC 4 cut(s) 128, 287, 310, 323
BshNI GGYRCC 3 cut(s) 197, 437, 607
BsiEI CGRYCG 3 cut(s) 81, 129, 311
BsiHKCI CYCGRG 2 cut(s) 398, 648
BsiSI CCGG 6 cut(s) 118, 147, 243, 324, 605, 611
BslFI GGGAC 3 cut(s) 45, 200, 498
BslI CCNNNNNNNGG 6 cut(s) 70, 120, 124, 242, 450, 463
BsmFI GGGAC 3 cut(s) 45, 200, 498
BsnI GGCC 4 cut(s) 128, 287, 310, 323
BsoBI CYCGRG 2 cut(s) 398, 648
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 78, 355
Bsp1720I GCTNAGC 1 cut(s) 404
Bsp68I TCGCGA 2 cut(s) 77, 360
BspANI GGCC 4 cut(s) 128, 287, 310, 323
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 4 cut(s) 77, 275, 307, 360
BspLI GGNNCC 6 cut(s) 199, 215, 216, 439, 455, 609
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 3 cut(s) 197, 437, 607
BsrBI CCGCTC 3 cut(s) 49, 313, 550
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 57, 209
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 282, 288, 427
BssMI GATC 2 cut(s) 78, 355
BssNI GRCGYC 3 cut(s) 153, 198, 438
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 494, 506, 641
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 3 cut(s) 153, 198, 438
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 244, 303
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 448
BstFNI CGCG 4 cut(s) 77, 275, 307, 360
BstH2I RGCGCY 4 cut(s) 108, 201, 411, 441
BstHHI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
BstKTI GATC 2 cut(s) 81, 358
BstMBI GATC 2 cut(s) 78, 355
BstMCI CGRYCG 3 cut(s) 81, 129, 311
BstMWI GCNNNNNNNGC 4 cut(s) 102, 183, 307, 607
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 145, 621
BstUI CGCG 4 cut(s) 77, 275, 307, 360
BstV1I GCAGC 2 cut(s) 435, 511
BstZI CGGCCG 2 cut(s) 126, 308
BsuRI GGCC 4 cut(s) 128, 287, 310, 323
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 579
BtrI CACGTC 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 502
BtuMI TCGCGA 2 cut(s) 77, 360
Cac8I GCNNGC 2 cut(s) 244, 303
CciNI GCGGCCGC 1 cut(s) 308
CfoI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 214, 619
CseI GACGC 3 cut(s) 161, 175, 281
Csp6I GTAC 2 cut(s) 17, 136
CviAII CATG 1 cut(s) 364
CviQI GTAC 2 cut(s) 17, 136
DdeI CTNAG 1 cut(s) 404
DinI GGCGCC 2 cut(s) 199, 439
DpnI GATC 2 cut(s) 80, 357
DpnII GATC 2 cut(s) 78, 355
DraIII CACNNNGTG 2 cut(s) 349, 508
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 3 cut(s) 126, 285, 308
EagI CGGCCG 2 cut(s) 126, 308
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 602
EclXI CGGCCG 2 cut(s) 126, 308
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 214, 619
Eco52I CGGCCG 2 cut(s) 126, 308
Eco72I CACGTG 1 cut(s) 172
Eco88I CYCGRG 2 cut(s) 398, 648
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 405
EgeI GGCGCC 2 cut(s) 199, 439
EheI GGCGCC 2 cut(s) 199, 439
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 367
FaiI YATR 3 cut(s) 347, 365, 419
FaqI GGGAC 3 cut(s) 45, 200, 498
FatI CATG 1 cut(s) 363
FauI CCCGC 2 cut(s) 19, 54
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 8 cut(s) 126, 308, 311, 424, 441, 500, 562, 585
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 8 cut(s) 126, 308, 311, 424, 441, 500, 562, 585
GlaI GCGC 6 cut(s) 106, 176, 199, 306, 409, 439
GluI GCNGC 8 cut(s) 126, 308, 311, 424, 441, 500, 562, 585
GsaI CCCAGC 2 cut(s) 24, 214
HaeII RGCGCY 4 cut(s) 108, 201, 411, 441
HaeIII GGCC 4 cut(s) 128, 287, 310, 323
HapII CCGG 6 cut(s) 118, 147, 243, 324, 605, 611
HgaI GACGC 3 cut(s) 161, 175, 281
HhaI GCGC 6 cut(s) 107, 177, 200, 307, 410, 440
Hin1I GRCGYC 3 cut(s) 153, 198, 438
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 6 cut(s) 105, 175, 198, 305, 408, 438
HinP1I GCGC 6 cut(s) 105, 175, 198, 305, 408, 438
HincII GTYRAC 2 cut(s) 223, 279
HindII GTYRAC 2 cut(s) 223, 279
HinfI GANTC 1 cut(s) 327
HpaII CCGG 6 cut(s) 118, 147, 243, 324, 605, 611
HphI GGTGA 2 cut(s) 538, 653
Hpy166II GTNNAC 2 cut(s) 223, 279
Hpy188I TCNGA 5 cut(s) 143, 259, 476, 487, 663
Hpy188III TCNNGA 4 cut(s) 76, 359, 460, 536
Hpy8I GTNNAC 2 cut(s) 223, 279
Hpy99I CGWCG 9 cut(s) 89, 101, 155, 161, 224, 242, 275, 298, 521
HpyAV CCTTC 2 cut(s) 346, 361
HpyCH4III ACNGT 3 cut(s) 494, 506, 641
HpyCH4IV ACGT 3 cut(s) 171, 543, 594
HpyCH4V TGCA 1 cut(s) 499
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 183, 307, 607
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 3 cut(s) 171, 543, 594
Hsp92I GRCGYC 3 cut(s) 153, 198, 438
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 6 cut(s) 105, 175, 198, 305, 408, 438
KasI GGCGCC 2 cut(s) 197, 437
KflI GGGWCCC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 78, 355
LmnI GCTCC 3 cut(s) 298, 453, 547
Lsp1109I GCAGC 2 cut(s) 435, 511
MaeII ACGT 3 cut(s) 171, 543, 594
MalI GATC 2 cut(s) 80, 357
MbiI CCGCTC 3 cut(s) 49, 313, 550
MboI GATC 2 cut(s) 78, 355
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 405
MluI ACGCGT 1 cut(s) 273
Mly113I GGCGCC 2 cut(s) 198, 438
MmeI TCCRAC 1 cut(s) 166
MreI CGCCGGCG 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 242
MseI TTAA 2 cut(s) 92, 667
MspI CCGG 6 cut(s) 118, 147, 243, 324, 605, 611
MspR9I CCNGG 2 cut(s) 147, 623
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 4 cut(s) 77, 275, 307, 360
MwoI GCNNNNNNNGC 4 cut(s) 102, 183, 307, 607
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 2 cut(s) 198, 438
NciI CCSGG 1 cut(s) 147
NdeII GATC 2 cut(s) 78, 355
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 6 cut(s) 199, 215, 216, 439, 455, 609
NmeAIII GCCGAG 2 cut(s) 154, 452
NotI GCGGCCGC 1 cut(s) 308
NruI TCGCGA 2 cut(s) 77, 360
PaeR7I CTCGAG 1 cut(s) 648
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 93, 290
PdiI GCCGGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 127, 309, 312, 425, 442, 501, 563, 586
Ple19I CGATCG 1 cut(s) 81
PluTI GGCGCC 2 cut(s) 201, 441
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 621
PspCI CACGTG 1 cut(s) 172
PspFI CCCAGC 2 cut(s) 20, 210
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 6 cut(s) 199, 215, 216, 439, 455, 609
PspPI GGNCC 2 cut(s) 214, 619
PspPPI RGGWCCY 1 cut(s) 214
PspXI VCTCGAGB 1 cut(s) 648
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 81
RgaI GCGATCGC 1 cut(s) 81
RruI TCGCGA 2 cut(s) 77, 360
RsaI GTAC 2 cut(s) 18, 137
RsaNI GTAC 2 cut(s) 17, 136
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 92, 667
SatI GCNGC 8 cut(s) 126, 308, 311, 424, 441, 500, 562, 585
Sau3AI GATC 2 cut(s) 78, 355
Sau96I GGNCC 2 cut(s) 214, 619
ScrFI CCNGG 2 cut(s) 147, 623
SduI GDGCHC 1 cut(s) 405
SfaAI GCGATCGC 1 cut(s) 81
SfoI GGCGCC 2 cut(s) 199, 439
Sfr274I CTCGAG 1 cut(s) 648
SgfI GCGATCGC 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 2 cut(s) 214, 619
SlaI CTCGAG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 458, 648
SmoI CTYRAG 2 cut(s) 458, 648
SspDI GGCGCC 2 cut(s) 197, 437
StyD4I CCNGG 2 cut(s) 145, 621
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 494, 506, 641
TaiI ACGT 3 cut(s) 174, 546, 597
TaqI TCGA 5 cut(s) 87, 222, 270, 330, 649
TauI GCSGC 6 cut(s) 128, 310, 313, 443, 564, 587
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 92, 667
Tru9I TTAA 2 cut(s) 92, 667
TscAI CASTG 1 cut(s) 509
TseI GCWGC 2 cut(s) 423, 499
TspDTI ATGAA 2 cut(s) 17, 380
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 509
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 214, 619
XagI CCTNNNNNAGG 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 648
XmiI GTMKAC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.