Rh5BG043600

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001958
Physical Location & Seq
Reverse (-)
3475542 .. 3478568
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG043600.1

Sequence Viewer

Length: 714 bp
ATGGCTTCTCCGAAGAAGAGCCCATCATCTTCAGAACCAGAGCGTCAGCACTCCGGCTCGGCGATCGTAGTCCAACCCTCCTCCCCTCGCTTCCCTCCCAGCGGCACCCCCACCTCTGGCGCCCAGCGCCGCATCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTCAAGTGGGCCGTCCAAAACTACCTCCGCCCCGGCGACGCCGTCGTCCTCCTCCACGTCCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCGTCCCCTACGACGAGGCCTCCCAGCAGAAACTCGAGTCCGATTTCGACAACTTCACCCTCACCAAAGCCACCGACCTCTCCAAGCCTCTCGAGGAGGCTCGGATCCCCTACAAGATCCACATAGTGAAGGACCACGATATGAAGGAGCGTCTCTGCTTGGAGGTCGAGCGGCTCGGCCTGGTCGCCGTCATTATGGGCAGCCGGGGGTTCGGAGCCACCAAGCGGAGCTCCAACGCCAGGCTCGGTAGTGTTAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATCGTCGTTAGGTTTTCCGATGACAAGGACGGAGATGGAGACGGAGACCACGTCGTAAAGCCGGCGAGGTTTGACTCTGTTCACGAGGAAGAGCCGGAGTTCCATGACGCTTTGGATAAAGATACGGATAAGGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

237

Amino Acids

25.98

Weight (kDa)

5.58

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 43 - 195 1.4e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 218, 284
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 4 cut(s) 104, 119, 257, 269
AccBSI CCGCTC 1 cut(s) 454
AciI CCGC 6 cut(s) 102, 130, 202, 235, 454, 508
AclWI GGATC 4 cut(s) 146, 382, 394, 395
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 5 cut(s) 120, 213, 258, 270, 279
AdeI CACNNNGTG 1 cut(s) 409
AfiI CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
AjiI CACGTC 2 cut(s) 232, 625
AjnI CCWGG 2 cut(s) 462, 521
AluBI AGCT 1 cut(s) 513
AluI AGCT 1 cut(s) 513
Alw21I GWGCWC 2 cut(s) 515, 555
Alw26I GTCTC 4 cut(s) 286, 440, 606, 612
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 4 cut(s) 146, 382, 394, 395
Ama87I CYCGRG 2 cut(s) 317, 374
AoxI GGCC 3 cut(s) 183, 300, 460
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 483
AspLEI GCGC 5 cut(s) 122, 129, 167, 260, 272
AspS9I GGNCC 2 cut(s) 183, 415
AsuC2I CCSGG 2 cut(s) 207, 488
AsuHPI GGTGA 2 cut(s) 331, 337
AvaI CYCGRG 2 cut(s) 317, 374
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 555
BamHI GGATCC 1 cut(s) 387
BanI GGYRCC 4 cut(s) 104, 119, 257, 269
BanII GRGCYC 2 cut(s) 23, 515
BauI CACGAG 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 515, 555
BbvI GCAGC 1 cut(s) 495
BccI CCATC 2 cut(s) 31, 602
BceAI ACGGC 6 cut(s) 128, 158, 170, 200, 271, 455
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 2 cut(s) 464, 523
BcnI CCSGG 2 cut(s) 207, 488
BcoDI GTCTC 4 cut(s) 286, 440, 606, 612
BfoI RGCGCY 5 cut(s) 123, 130, 168, 261, 273
BisI GCNGC 4 cut(s) 103, 130, 455, 484
BlsI GCNGC 4 cut(s) 104, 131, 456, 485
Bme1390I CCNGG 4 cut(s) 207, 464, 488, 523
Bme18I GGWCC 1 cut(s) 415
BmeT110I CYCGRG 2 cut(s) 317, 374
BmgBI CACGTC 2 cut(s) 232, 625
BmgT120I GGNCC 2 cut(s) 183, 415
BmiI GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
BmrFI CCNGG 4 cut(s) 207, 464, 488, 523
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 274
BpuMI CCSGG 2 cut(s) 207, 488
BsaHI GRCGYC 5 cut(s) 120, 213, 258, 270, 279
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 205, 487
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 609, 639
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 464, 523
BseDI CCNNGG 2 cut(s) 205, 487
BseLI CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 70, 215, 392
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 3 cut(s) 98, 123, 306
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 185, 302, 462
BshNI GGYRCC 4 cut(s) 104, 119, 257, 269
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 515, 555
BsiHKCI CYCGRG 2 cut(s) 317, 374
BsiSI CCGG 6 cut(s) 54, 207, 487, 569, 635, 668
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
BsmAI GTCTC 4 cut(s) 286, 440, 606, 612
BsmBI CGTCTC 3 cut(s) 286, 440, 606
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 3 cut(s) 185, 302, 462
Bso31I GGTCTC 1 cut(s) 612
BsoBI CYCGRG 2 cut(s) 317, 374
Bsp1286I GDGCHC 3 cut(s) 23, 515, 555
Bsp143I GATC 5 cut(s) 63, 138, 148, 387, 399
BspACI CCGC 6 cut(s) 102, 130, 202, 235, 454, 508
BspANI GGCC 3 cut(s) 185, 302, 462
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
BspPI GGATC 4 cut(s) 146, 382, 394, 395
BspQI GCTCTTC 2 cut(s) 11, 657
BspT107I GGYRCC 4 cut(s) 104, 119, 257, 269
BspTNI GGTCTC 1 cut(s) 612
BsrBI CCGCTC 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 634
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 205, 487
BssMI GATC 5 cut(s) 63, 138, 148, 387, 399
BssNI GRCGYC 5 cut(s) 120, 213, 258, 270, 279
BssSI CACGAG 1 cut(s) 656
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 2 cut(s) 464, 523
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 11, 657
BstACI GRCGYC 5 cut(s) 120, 213, 258, 270, 279
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 1 cut(s) 152
BstH2I RGCGCY 5 cut(s) 123, 130, 168, 261, 273
BstHHI GCGC 5 cut(s) 122, 129, 167, 260, 272
BstKTI GATC 5 cut(s) 66, 141, 151, 390, 402
BstMAI GTCTC 4 cut(s) 286, 440, 606, 612
BstMBI GATC 5 cut(s) 63, 138, 148, 387, 399
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 126, 162, 243
BstNI CCWGG 2 cut(s) 464, 523
BstSCI CCNGG 4 cut(s) 205, 462, 486, 521
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 387, 399
BstYI RGATCY 2 cut(s) 387, 399
BsuRI GGCC 3 cut(s) 185, 302, 462
BtrI CACGTC 2 cut(s) 232, 625
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 636
CfoI GCGC 5 cut(s) 122, 129, 167, 260, 272
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 183, 415
CseI GACGC 6 cut(s) 32, 221, 235, 422, 550, 689
CviAII CATG 1 cut(s) 677
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 3 cut(s) 121, 259, 271
DpnI GATC 5 cut(s) 65, 140, 150, 389, 401
DpnII GATC 5 cut(s) 63, 138, 148, 387, 399
DraIII CACNNNGTG 1 cut(s) 409
DrdI GACNNNNNNGTC 2 cut(s) 218, 284
DseDI GACNNNNNNGTC 2 cut(s) 218, 284
Eam1104I CTCTTC 2 cut(s) 11, 657
EarI CTCTTC 2 cut(s) 11, 657
EciI GGCGGA 2 cut(s) 191, 224
Ecl136II GAGCTC 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 23, 515
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 2 cut(s) 317, 374
EcoICRI GAGCTC 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 462, 521
EcoT38I GRGCYC 2 cut(s) 23, 515
EgeI GGCGCC 3 cut(s) 121, 259, 271
EheI GGCGCC 3 cut(s) 121, 259, 271
Esp3I CGTCTC 3 cut(s) 286, 440, 606
FaeI CATG 1 cut(s) 680
FaiI YATR 4 cut(s) 407, 425, 479, 678
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 676
Fnu4HI GCNGC 4 cut(s) 103, 130, 455, 484
FriOI GRGCYC 2 cut(s) 23, 515
Fsp4HI GCNGC 4 cut(s) 103, 130, 455, 484
GlaI GCGC 5 cut(s) 121, 128, 166, 259, 271
GluI GCNGC 4 cut(s) 103, 130, 455, 484
GsaI CCCAGC 3 cut(s) 102, 127, 310
HaeII RGCGCY 5 cut(s) 123, 130, 168, 261, 273
HaeIII GGCC 3 cut(s) 185, 302, 462
HapII CCGG 6 cut(s) 54, 207, 487, 569, 635, 668
HgaI GACGC 6 cut(s) 32, 221, 235, 422, 550, 689
HhaI GCGC 5 cut(s) 122, 129, 167, 260, 272
Hin1I GRCGYC 5 cut(s) 120, 213, 258, 270, 279
Hin1II CATG 1 cut(s) 680
Hin6I GCGC 5 cut(s) 120, 127, 165, 258, 270
HinP1I GCGC 5 cut(s) 120, 127, 165, 258, 270
HinfI GANTC 2 cut(s) 320, 647
HpaII CCGG 6 cut(s) 54, 207, 487, 569, 635, 668
HphI GGTGA 2 cut(s) 331, 337
Hpy166II GTNNAC 2 cut(s) 553, 655
Hpy188I TCNGA 6 cut(s) 12, 34, 325, 387, 497, 592
Hpy188III TCNNGA 3 cut(s) 136, 374, 656
Hpy8I GTNNAC 2 cut(s) 553, 655
Hpy99I CGWCG 8 cut(s) 149, 161, 215, 221, 281, 299, 581, 629
HpyAV CCTTC 3 cut(s) 178, 406, 421
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 3 cut(s) 231, 279, 624
HpyCH4V TGCA 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 162, 243
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 3 cut(s) 231, 279, 624
Hsp92I GRCGYC 5 cut(s) 120, 213, 258, 270, 279
Hsp92II CATG 1 cut(s) 680
HspAI GCGC 5 cut(s) 120, 127, 165, 258, 270
KasI GGCGCC 3 cut(s) 119, 257, 269
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Kzo9I GATC 5 cut(s) 63, 138, 148, 387, 399
LguI GCTCTTC 2 cut(s) 11, 657
LmnI GCTCC 4 cut(s) 430, 497, 510, 518
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 141
MaeII ACGT 3 cut(s) 231, 279, 624
MaeIII GTNAC 1 cut(s) 539
MalI GATC 5 cut(s) 65, 140, 150, 389, 401
MbiI CCGCTC 1 cut(s) 454
MboI GATC 5 cut(s) 63, 138, 148, 387, 399
MboII GAAGA 4 cut(s) 21, 25, 28, 674
MflI RGATCY 2 cut(s) 387, 399
MhlI GDGCHC 3 cut(s) 23, 515, 555
Mly113I GGCGCC 3 cut(s) 120, 258, 270
MlyI GAGTC 2 cut(s) 329, 641
MmeI TCCRAC 2 cut(s) 97, 540
MroNI GCCGGC 1 cut(s) 634
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 6 cut(s) 54, 207, 487, 569, 635, 668
MspR9I CCNGG 4 cut(s) 207, 464, 488, 523
MvaI CCWGG 2 cut(s) 464, 523
MwoI GCNNNNNNNGC 3 cut(s) 126, 162, 243
NaeI GCCGGC 1 cut(s) 636
NarI GGCGCC 3 cut(s) 120, 258, 270
NciI CCSGG 2 cut(s) 207, 488
NdeII GATC 5 cut(s) 63, 138, 148, 387, 399
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 1 cut(s) 680
NlaIV GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
NmeAIII GCCGAG 2 cut(s) 38, 438
NmuCI GTSAC 1 cut(s) 539
PaeR7I CTCGAG 2 cut(s) 317, 374
PceI AGGCCT 1 cut(s) 302
PciSI GCTCTTC 2 cut(s) 11, 657
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 153, 621
PdiI GCCGGC 1 cut(s) 636
PflFI GACNNNGTC 2 cut(s) 215, 623
PkrI GCNGC 4 cut(s) 104, 131, 456, 485
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 2 cut(s) 328, 641
PluTI GGCGCC 3 cut(s) 123, 261, 273
PpsI GAGTC 2 cut(s) 328, 641
Psp124BI GAGCTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 462, 521
PspFI CCCAGC 3 cut(s) 98, 123, 306
PspGI CCWGG 2 cut(s) 462, 521
PspN4I GGNNCC 6 cut(s) 106, 121, 259, 271, 389, 499
PspPI GGNCC 2 cut(s) 183, 415
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 2 cut(s) 387, 399
PsyI GACNNNGTC 2 cut(s) 215, 623
PvuI CGATCG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 515
SapI GCTCTTC 2 cut(s) 11, 657
SatI GCNGC 4 cut(s) 103, 130, 455, 484
Sau3AI GATC 5 cut(s) 63, 138, 148, 387, 399
Sau96I GGNCC 2 cut(s) 183, 415
SchI GAGTC 2 cut(s) 329, 641
ScrFI CCNGG 4 cut(s) 207, 464, 488, 523
SduI GDGCHC 3 cut(s) 23, 515, 555
SfaNI GCATC 1 cut(s) 141
SfoI GGCGCC 3 cut(s) 121, 259, 271
Sfr274I CTCGAG 2 cut(s) 317, 374
SinI GGWCC 1 cut(s) 415
SlaI CTCGAG 2 cut(s) 317, 374
SmlI CTYRAG 2 cut(s) 317, 374
SmoI CTYRAG 2 cut(s) 317, 374
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 6 cut(s) 102, 130, 202, 235, 454, 508
SspDI GGCGCC 3 cut(s) 119, 257, 269
SstI GAGCTC 1 cut(s) 515
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 4 cut(s) 205, 462, 486, 521
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 3 cut(s) 234, 282, 627
TaqI TCGA 5 cut(s) 147, 318, 330, 375, 450
TauI GCSGC 3 cut(s) 105, 132, 457
TscAI CASTG 1 cut(s) 563
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 4 cut(s) 274, 618, 630, 713
TspRI CASTG 1 cut(s) 563
Tth111I GACNNNGTC 2 cut(s) 215, 623
VneI GTGCAC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 415
XhoI CTCGAG 2 cut(s) 317, 374
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.