MD05G1329100.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0001958
Physical Location & Seq
Forward (+)
45418865 .. 45422016
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1329100.v1.1.491

Sequence Viewer

Length: 852 bp
ATGGAACCCCGAACCATTTTGCCAGAAAGTGTACCCAAAATTCACTTAAAATATTTGCGACCTCCACACACTCTCTACCGAAAAAAAAAAAACTTTTTGATTCCCTTAACCATCGTTCTTCTCAAATATTCCGATTATATCCCCATGGCTTCTCCCAGAAAGAGCCCGTTATCGGAACCCGGAGATCGCCAGTCCGCTGCGGCAATCGTAGTCCAACCGTCGTCCCCGCGCTACCCTCCCAGCGGGACTCCCACCTCCGGAGCCCAGCGCCGAATCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTTAAATGGGCCGTCCAGAACTACCTCCGCCCCGGAGACGCCGTCATCCTCCTCCACGTCCGTCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCATCCCCGAGGACCAGGAGTCCCAGCAGAAGCTCGAGGACGATTTCGACAATTTCACCGTCACCAAGGCCAACGACCTCGCCAAGCCGCTCGAGGAGGCCAAGATGCCGTACAAGATCCACATAGTCAAGGACCATGACATGAAGGAGCGGTTGTGTTTGGAGGTCGAGAGGCTCGGCCTCAGCGCCGTCGTGATGGGCAGCCGGGGATTCGGGGCTTCTAAGCGGACCTCCAAGGCCAGGCTCGGCAGTGTCAGTGACTACTGCGTGCAACACTGCGTTTGCCCTGTCATCGTCGTGAGGTTCTCCGATGACAAGGATGATGAAATCGACGCCGTAAAGCAAGGTAATTTTGACTGCCCCGTCGTGCCTGAGGAGGAGCCGGAGTTTCATGATGCTTTGGATAAAGATGCCGATAAGGCGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

284

Amino Acids

31.54

Weight (kDa)

6.01

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 90 - 242 5.3e-27 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AatII GACGTC 1 cut(s) 423
AccB1I GGYRCC 2 cut(s) 398, 410
AccBSI CCGCTC 2 cut(s) 514, 574
AccII CGCG 2 cut(s) 229, 847
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 8 cut(s) 195, 200, 227, 243, 343, 512, 574, 649
AclWI GGATC 2 cut(s) 287, 535
AcsI RAATTY 1 cut(s) 39
AcyI GRCGYC 5 cut(s) 354, 399, 411, 420, 756
AfaI GTAC 2 cut(s) 33, 536
AfiI CCNNNNNNNGG 5 cut(s) 172, 242, 257, 321, 663
AhdI GACNNNNNGTC 1 cut(s) 442
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 2 cut(s) 438, 662
AluBI AGCT 1 cut(s) 457
AluI AGCT 1 cut(s) 457
Alw26I GTCTC 2 cut(s) 345, 427
AlwI GGATC 2 cut(s) 287, 535
Ama87I CYCGRG 3 cut(s) 431, 458, 515
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 5 cut(s) 324, 492, 522, 601, 660
ApeKI GCWGC 2 cut(s) 197, 624
ApoI RAATTY 1 cut(s) 39
AspLEI GCGC 8 cut(s) 231, 270, 308, 401, 413, 611, 847, 849
AspS9I GGNCC 4 cut(s) 324, 436, 556, 651
AsuC2I CCSGG 3 cut(s) 180, 348, 629
AsuHPI GGTGA 2 cut(s) 472, 478
AvaI CYCGRG 3 cut(s) 431, 458, 515
AvaII GGWCC 3 cut(s) 436, 556, 651
AxyI CCTNAGG 1 cut(s) 795
BanI GGYRCC 2 cut(s) 398, 410
BanII GRGCYC 2 cut(s) 167, 265
BbvCI CCTCAGC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 184, 636
BccI CCATC 3 cut(s) 119, 434, 613
BceAI ACGGC 8 cut(s) 269, 299, 311, 341, 412, 517, 596, 743
BciT130I CCWGG 2 cut(s) 440, 664
BcnI CCSGG 3 cut(s) 180, 348, 629
BcoDI GTCTC 2 cut(s) 345, 427
BfoI RGCGCY 5 cut(s) 271, 309, 402, 414, 612
BglI GCCNNNNNGGC 1 cut(s) 842
BisI GCNGC 4 cut(s) 198, 201, 512, 625
BlsI GCNGC 4 cut(s) 199, 202, 513, 626
Bme1390I CCNGG 5 cut(s) 180, 348, 440, 629, 664
Bme18I GGWCC 3 cut(s) 436, 556, 651
BmeRI GACNNNNNGTC 1 cut(s) 442
BmeT110I CYCGRG 3 cut(s) 431, 458, 515
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 4 cut(s) 324, 436, 556, 651
BmiI GGNNCC 6 cut(s) 6, 177, 262, 400, 412, 804
BmrFI CCNGG 5 cut(s) 180, 348, 440, 629, 664
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 3 cut(s) 519, 808, 823
BmuI ACTGGG 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 605
BpuMI CCSGG 3 cut(s) 180, 348, 629
BsaHI GRCGYC 5 cut(s) 354, 399, 411, 420, 756
BsaJI CCNNGG 6 cut(s) 144, 346, 432, 489, 628, 657
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 6 cut(s) 342, 372, 563, 593, 794, 824
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 242, 257, 321, 663
Bse1I ACTGG 2 cut(s) 190, 410
Bse21I CCTNAGG 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 2 cut(s) 440, 664
BseDI CCNNGG 6 cut(s) 144, 346, 432, 489, 628, 657
BseGI GGATG 3 cut(s) 360, 426, 748
BseLI CCNNNNNNNGG 5 cut(s) 172, 242, 257, 321, 663
BseMII CTCAG 3 cut(s) 307, 619, 786
BseNI ACTGG 2 cut(s) 190, 410
BsePI GCGCGC 1 cut(s) 845
BseRI GAGGAG 4 cut(s) 356, 533, 812, 815
BseXI GCAGC 2 cut(s) 184, 636
BseYI CCCAGC 3 cut(s) 239, 264, 447
Bsh1236I CGCG 2 cut(s) 229, 847
BshFI GGCC 5 cut(s) 326, 494, 524, 603, 662
BshNI GGYRCC 2 cut(s) 398, 410
BsiHKCI CYCGRG 3 cut(s) 431, 458, 515
BsiSI CCGG 5 cut(s) 180, 258, 348, 628, 806
BslFI GGGAC 4 cut(s) 208, 259, 363, 430
BslI CCNNNNNNNGG 5 cut(s) 172, 242, 257, 321, 663
BsmAI GTCTC 2 cut(s) 345, 427
BsmBI CGTCTC 2 cut(s) 345, 427
BsmFI GGGAC 4 cut(s) 208, 259, 363, 430
BsnI GGCC 5 cut(s) 326, 494, 524, 603, 662
BsoBI CYCGRG 3 cut(s) 431, 458, 515
Bsp1286I GDGCHC 2 cut(s) 167, 265
Bsp13I TCCGGA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 184, 279, 289, 540
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 8 cut(s) 195, 200, 227, 243, 343, 512, 574, 649
BspANI GGCC 5 cut(s) 326, 494, 524, 603, 662
BspCNI CTCAG 3 cut(s) 306, 618, 787
BspEI TCCGGA 1 cut(s) 257
BspFNI CGCG 2 cut(s) 229, 847
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 6 cut(s) 6, 177, 262, 400, 412, 804
BspPI GGATC 2 cut(s) 287, 535
BspT107I GGYRCC 2 cut(s) 398, 410
BsrBI CCGCTC 2 cut(s) 514, 574
BsrI ACTGG 2 cut(s) 190, 410
BssECI CCNNGG 6 cut(s) 144, 346, 432, 489, 628, 657
BssHII GCGCGC 1 cut(s) 845
BssMI GATC 4 cut(s) 184, 279, 289, 540
BssNI GRCGYC 5 cut(s) 354, 399, 411, 420, 756
BssT1I CCWWGG 3 cut(s) 144, 489, 657
Bst2UI CCWGG 2 cut(s) 440, 664
Bst4CI ACNGT 2 cut(s) 219, 484
BstACI GRCGYC 5 cut(s) 354, 399, 411, 420, 756
BstC8I GCNNGC 2 cut(s) 692, 847
BstDEI CTNAG 4 cut(s) 293, 605, 645, 795
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 360, 426, 748
BstFNI CGCG 2 cut(s) 229, 847
BstH2I RGCGCY 5 cut(s) 271, 309, 402, 414, 612
BstHHI GCGC 8 cut(s) 231, 270, 308, 401, 413, 611, 847, 849
BstKTI GATC 4 cut(s) 187, 282, 292, 543
BstMAI GTCTC 2 cut(s) 345, 427
BstMBI GATC 4 cut(s) 184, 279, 289, 540
BstMWI GCNNNNNNNGC 2 cut(s) 303, 842
BstNI CCWGG 2 cut(s) 440, 664
BstSCI CCNGG 5 cut(s) 178, 346, 438, 627, 662
BstUI CGCG 2 cut(s) 229, 847
BstV1I GCAGC 2 cut(s) 184, 636
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
Bsu36I CCTNAGG 1 cut(s) 795
BsuRI GGCC 5 cut(s) 326, 494, 524, 603, 662
BtgI CCRYGG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 3 cut(s) 360, 426, 748
BtsI GCAGTG 2 cut(s) 679, 697
BtsIMutI CAGTG 3 cut(s) 679, 685, 697
Cac8I GCNNGC 2 cut(s) 692, 847
CciI TCATGA 1 cut(s) 814
CfoI GCGC 8 cut(s) 231, 270, 308, 401, 413, 611, 847, 849
Cfr13I GGNCC 4 cut(s) 324, 436, 556, 651
CseI GACGC 3 cut(s) 362, 376, 764
Csp6I GTAC 2 cut(s) 32, 535
CviAII CATG 4 cut(s) 145, 560, 565, 815
CviQI GTAC 2 cut(s) 32, 535
DdeI CTNAG 4 cut(s) 293, 605, 645, 795
DinI GGCGCC 2 cut(s) 400, 412
DpnI GATC 4 cut(s) 186, 281, 291, 542
DpnII GATC 4 cut(s) 184, 279, 289, 540
DrdI GACNNNNNNGTC 1 cut(s) 785
DriI GACNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 785
Eam1105I GACNNNNNGTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 144, 489, 657
Eco24I GRGCYC 2 cut(s) 167, 265
Eco47I GGWCC 3 cut(s) 436, 556, 651
Eco81I CCTNAGG 1 cut(s) 795
Eco88I CYCGRG 3 cut(s) 431, 458, 515
EcoRII CCWGG 2 cut(s) 438, 662
EcoT14I CCWWGG 3 cut(s) 144, 489, 657
EcoT38I GRGCYC 2 cut(s) 167, 265
EgeI GGCGCC 2 cut(s) 400, 412
EheI GGCGCC 2 cut(s) 400, 412
ErhI CCWWGG 3 cut(s) 144, 489, 657
Esp3I CGTCTC 2 cut(s) 345, 427
FaeI CATG 4 cut(s) 148, 563, 568, 818
FaiI YATR 6 cut(s) 138, 146, 548, 561, 566, 816
FaqI GGGAC 4 cut(s) 208, 259, 363, 430
FatI CATG 4 cut(s) 144, 559, 564, 814
FauI CCCGC 2 cut(s) 234, 236
Fnu4HI GCNGC 4 cut(s) 198, 201, 512, 625
FokI GGATG 3 cut(s) 347, 413, 755
FriOI GRGCYC 2 cut(s) 167, 265
Fsp4HI GCNGC 4 cut(s) 198, 201, 512, 625
GlaI GCGC 8 cut(s) 230, 269, 307, 400, 412, 610, 846, 848
GluI GCNGC 4 cut(s) 198, 201, 512, 625
GsaI CCCAGC 3 cut(s) 243, 268, 451
HaeII RGCGCY 5 cut(s) 271, 309, 402, 414, 612
HaeIII GGCC 5 cut(s) 326, 494, 524, 603, 662
HapII CCGG 5 cut(s) 180, 258, 348, 628, 806
HgaI GACGC 3 cut(s) 362, 376, 764
HhaI GCGC 8 cut(s) 231, 270, 308, 401, 413, 611, 847, 849
Hin1I GRCGYC 5 cut(s) 354, 399, 411, 420, 756
Hin1II CATG 4 cut(s) 148, 563, 568, 818
Hin6I GCGC 8 cut(s) 229, 268, 306, 399, 411, 609, 845, 847
HinP1I GCGC 8 cut(s) 229, 268, 306, 399, 411, 609, 845, 847
HinfI GANTC 5 cut(s) 100, 247, 273, 443, 633
HpaII CCGG 5 cut(s) 180, 258, 348, 628, 806
HphI GGTGA 2 cut(s) 472, 478
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 133, 175, 733
Hpy188III TCNNGA 7 cut(s) 258, 277, 331, 592, 616, 721, 815
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 8 cut(s) 223, 290, 302, 422, 617, 722, 758, 791
HpyAV CCTTC 2 cut(s) 319, 562
HpyCH4III ACNGT 2 cut(s) 219, 484
HpyCH4IV ACGT 2 cut(s) 372, 420
HpyCH4V TGCA 1 cut(s) 694
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 842
HpyF3I CTNAG 4 cut(s) 293, 605, 645, 795
HpySE526I ACGT 2 cut(s) 372, 420
Hsp92I GRCGYC 5 cut(s) 354, 399, 411, 420, 756
Hsp92II CATG 4 cut(s) 148, 563, 568, 818
HspAI GCGC 8 cut(s) 229, 268, 306, 399, 411, 609, 845, 847
KasI GGCGCC 2 cut(s) 398, 410
Kpn2I TCCGGA 1 cut(s) 257
Kzo9I GATC 4 cut(s) 184, 279, 289, 540
LmnI GCTCC 3 cut(s) 260, 571, 802
Lsp1109I GCAGC 2 cut(s) 184, 636
LweI GCATC 3 cut(s) 519, 808, 823
MaeII ACGT 2 cut(s) 372, 420
MaeIII GTNAC 2 cut(s) 484, 680
MalI GATC 4 cut(s) 186, 281, 291, 542
MbiI CCGCTC 2 cut(s) 514, 574
MboI GATC 4 cut(s) 184, 279, 289, 540
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 2 cut(s) 167, 265
MluCI AATT 3 cut(s) 39, 475, 772
Mly113I GGCGCC 2 cut(s) 399, 411
MlyI GAGTC 2 cut(s) 241, 452
MmeI TCCRAC 1 cut(s) 238
MroI TCCGGA 1 cut(s) 257
MseI TTAA 3 cut(s) 47, 107, 318
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 2 cut(s) 197, 243
MspI CCGG 5 cut(s) 180, 258, 348, 628, 806
MspR9I CCNGG 5 cut(s) 180, 348, 440, 629, 664
MvaI CCWGG 2 cut(s) 440, 664
MvnI CGCG 2 cut(s) 229, 847
MwoI GCNNNNNNNGC 2 cut(s) 303, 842
NarI GGCGCC 2 cut(s) 399, 411
NciI CCSGG 3 cut(s) 180, 348, 629
NcoI CCATGG 1 cut(s) 144
NdeII GATC 4 cut(s) 184, 279, 289, 540
NlaIII CATG 4 cut(s) 148, 563, 568, 818
NlaIV GGNNCC 6 cut(s) 6, 177, 262, 400, 412, 804
NmeAIII GCCGAG 2 cut(s) 579, 648
NmuCI GTSAC 2 cut(s) 484, 680
PaeR7I CTCGAG 2 cut(s) 458, 515
PagI TCATGA 1 cut(s) 814
PauI GCGCGC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 294
PfeI GAWTC 3 cut(s) 100, 273, 633
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 199, 202, 513, 626
PleI GAGTC 2 cut(s) 241, 451
PluTI GGCGCC 2 cut(s) 402, 414
PpsI GAGTC 2 cut(s) 241, 451
Psp6I CCWGG 2 cut(s) 438, 662
PspFI CCCAGC 3 cut(s) 239, 264, 447
PspGI CCWGG 2 cut(s) 438, 662
PspN4I GGNNCC 6 cut(s) 6, 177, 262, 400, 412, 804
PspPI GGNCC 4 cut(s) 324, 436, 556, 651
PspXI VCTCGAGB 2 cut(s) 458, 515
PsuI RGATCY 1 cut(s) 540
PsyI GACNNNGTC 1 cut(s) 356
PteI GCGCGC 1 cut(s) 845
RsaI GTAC 2 cut(s) 33, 536
RsaNI GTAC 2 cut(s) 32, 535
RseI CAYNNNNRTG 1 cut(s) 719
SaqAI TTAA 3 cut(s) 47, 107, 318
SatI GCNGC 4 cut(s) 198, 201, 512, 625
Sau3AI GATC 4 cut(s) 184, 279, 289, 540
Sau96I GGNCC 4 cut(s) 324, 436, 556, 651
SchI GAGTC 2 cut(s) 241, 452
ScrFI CCNGG 5 cut(s) 180, 348, 440, 629, 664
SduI GDGCHC 2 cut(s) 167, 265
SfaNI GCATC 3 cut(s) 519, 808, 823
SfoI GGCGCC 2 cut(s) 400, 412
Sfr274I CTCGAG 2 cut(s) 458, 515
SinI GGWCC 3 cut(s) 436, 556, 651
SlaI CTCGAG 2 cut(s) 458, 515
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 2 cut(s) 458, 515
SmoI CTYRAG 2 cut(s) 458, 515
Sse9I AATT 3 cut(s) 39, 475, 772
SsiI CCGC 8 cut(s) 195, 200, 227, 243, 343, 512, 574, 649
SspDI GGCGCC 2 cut(s) 398, 410
SspI AATATT 2 cut(s) 53, 128
StyD4I CCNGG 5 cut(s) 178, 346, 438, 627, 662
StyI CCWWGG 3 cut(s) 144, 489, 657
TaaI ACNGT 2 cut(s) 219, 484
TaiI ACGT 2 cut(s) 375, 423
TaqI TCGA 6 cut(s) 288, 459, 471, 516, 591, 753
TasI AATT 3 cut(s) 39, 475, 772
TauI GCSGC 2 cut(s) 203, 514
TfiI GAWTC 3 cut(s) 100, 273, 633
Tru1I TTAA 3 cut(s) 47, 107, 318
Tru9I TTAA 3 cut(s) 47, 107, 318
TscAI CASTG 3 cut(s) 679, 685, 704
TseFI GTSAC 2 cut(s) 484, 680
TseI GCWGC 2 cut(s) 197, 624
Tsp45I GTSAC 2 cut(s) 484, 680
TspDTI ATGAA 3 cut(s) 581, 762, 803
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 3 cut(s) 679, 685, 704
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 3 cut(s) 436, 556, 651
XapI RAATTY 1 cut(s) 39
XhoI CTCGAG 2 cut(s) 458, 515
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.