Rw5G004510

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001958
Physical Location & Seq
Reverse (-)
4740371 .. 4742803
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G004510.1

Sequence Viewer

Length: 717 bp
ATGGCTTCTCCGAAGAAGAGCCCATCATCATCATCATCTTCAGAACCAGAGCGTCAGCACTCCGGCTCGGCGATCGTAGTCCAACCCTCCTCCCCTCGCTTCCCTCCCAGCGGCACCCCCACCTCTGGCGCCCAGCGCCGCATCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTCAAGTGGGCCGTCCAAAACTACCTCCGCCCCGGCGACGCCGTCGTCCTCCTCCACGTCCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCATCCCCAACGACGAGGCCTCCCAGCAGAAGCTCGAGTCCGATTTCGACAACTTCACCCTCACCAAAGCCACCGACGTCTCCAAGCCTCTCGAGGAGGCTCGGATCCCCTACAAGATCCACATAGTGAAGGACCACGATATGAAGGAGCGTCTCTGCTTGGAGGTCGAGCGCCTCGGCCTGGTCGCCGTCATTATGGGCAGCCGGGGGTTCGGAGCCACCAAGCGGAGCTCCAACGCCAGGCTCGGTAGTGTTAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATCGTCGTTAGGTTTTCCGATGACAAGGACGGAGACGGAGACGACGTCGTAAAGCCGGCGAGGTTTGACTCTGTTCACGGGGACGAGCCGGAGTTCCATGACGCTTTGGATAAAGATACGGATAAGGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

238

Amino Acids

25.92

Weight (kDa)

5.61

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 46 - 198 1.2e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 3 cut(s) 291, 372, 630
AccB1I GGYRCC 4 cut(s) 113, 128, 266, 278
AciI CCGC 5 cut(s) 111, 139, 211, 244, 517
AclWI GGATC 4 cut(s) 155, 391, 403, 404
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 7 cut(s) 129, 222, 267, 279, 288, 369, 627
AdeI CACNNNGTG 1 cut(s) 418
AfiI CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 471, 530
AluBI AGCT 2 cut(s) 325, 522
AluI AGCT 2 cut(s) 325, 522
Alw21I GWGCWC 2 cut(s) 524, 564
Alw26I GTCTC 5 cut(s) 295, 376, 449, 609, 615
Alw44I GTGCAC 1 cut(s) 560
AlwI GGATC 4 cut(s) 155, 391, 403, 404
Ama87I CYCGRG 2 cut(s) 326, 383
AoxI GGCC 3 cut(s) 192, 309, 469
ApaLI GTGCAC 1 cut(s) 560
ApeKI GCWGC 1 cut(s) 492
AspLEI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
AspS9I GGNCC 2 cut(s) 192, 424
AsuC2I CCSGG 2 cut(s) 216, 497
AsuHPI GGTGA 2 cut(s) 340, 346
AvaI CYCGRG 2 cut(s) 326, 383
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 564
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 4 cut(s) 113, 128, 266, 278
BanII GRGCYC 2 cut(s) 23, 524
Bbv12I GWGCWC 2 cut(s) 524, 564
BbvI GCAGC 1 cut(s) 504
BccI CCATC 2 cut(s) 31, 302
BceAI ACGGC 6 cut(s) 137, 167, 179, 209, 280, 464
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 2 cut(s) 473, 532
BcnI CCSGG 2 cut(s) 216, 497
BcoDI GTCTC 5 cut(s) 295, 376, 449, 609, 615
BfoI RGCGCY 6 cut(s) 132, 139, 177, 270, 282, 466
BisI GCNGC 3 cut(s) 112, 139, 493
BlsI GCNGC 3 cut(s) 113, 140, 494
Bme1390I CCNGG 4 cut(s) 216, 473, 497, 532
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 2 cut(s) 326, 383
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 192, 424
BmiI GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
BmrFI CCNGG 4 cut(s) 216, 473, 497, 532
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 216, 497
BsaHI GRCGYC 7 cut(s) 129, 222, 267, 279, 288, 369, 627
BsaJI CCNNGG 3 cut(s) 214, 466, 496
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 612, 642
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 1 cut(s) 278
BseBI CCWGG 2 cut(s) 473, 532
BseDI CCNNGG 3 cut(s) 214, 466, 496
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 3 cut(s) 79, 224, 401
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 504
BseYI CCCAGC 3 cut(s) 107, 132, 315
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 194, 311, 471
BshNI GGYRCC 4 cut(s) 113, 128, 266, 278
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 524, 564
BsiHKCI CYCGRG 2 cut(s) 326, 383
BsiSI CCGG 6 cut(s) 63, 216, 496, 578, 638, 671
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 6 cut(s) 110, 125, 189, 472, 516, 531
BsmAI GTCTC 5 cut(s) 295, 376, 449, 609, 615
BsmBI CGTCTC 5 cut(s) 295, 376, 449, 609, 615
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 3 cut(s) 194, 311, 471
BsoBI CYCGRG 2 cut(s) 326, 383
Bsp1286I GDGCHC 3 cut(s) 23, 524, 564
Bsp143I GATC 5 cut(s) 72, 147, 157, 396, 408
BspACI CCGC 5 cut(s) 111, 139, 211, 244, 517
BspANI GGCC 3 cut(s) 194, 311, 471
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
BspPI GGATC 4 cut(s) 155, 391, 403, 404
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 4 cut(s) 113, 128, 266, 278
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 3 cut(s) 214, 466, 496
BssMI GATC 5 cut(s) 72, 147, 157, 396, 408
BssNI GRCGYC 7 cut(s) 129, 222, 267, 279, 288, 369, 627
Bst2UI CCWGG 2 cut(s) 473, 532
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 7 cut(s) 129, 222, 267, 279, 288, 369, 627
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 294
BstH2I RGCGCY 6 cut(s) 132, 139, 177, 270, 282, 466
BstHHI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
BstKTI GATC 5 cut(s) 75, 150, 160, 399, 411
BstMAI GTCTC 5 cut(s) 295, 376, 449, 609, 615
BstMBI GATC 5 cut(s) 72, 147, 157, 396, 408
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 135, 171, 252
BstNI CCWGG 2 cut(s) 473, 532
BstSCI CCNGG 4 cut(s) 214, 471, 495, 530
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 504
BstX2I RGATCY 2 cut(s) 396, 408
BstYI RGATCY 2 cut(s) 396, 408
BsuRI GGCC 3 cut(s) 194, 311, 471
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 639
CfoI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 192, 424
CseI GACGC 6 cut(s) 41, 230, 244, 431, 559, 692
CviAII CATG 1 cut(s) 680
DdeI CTNAG 1 cut(s) 161
DinI GGCGCC 3 cut(s) 130, 268, 280
DpnI GATC 5 cut(s) 74, 149, 159, 398, 410
DpnII GATC 5 cut(s) 72, 147, 157, 396, 408
DraIII CACNNNGTG 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 2 cut(s) 200, 233
Ecl136II GAGCTC 1 cut(s) 522
Eco147I AGGCCT 1 cut(s) 311
Eco24I GRGCYC 2 cut(s) 23, 524
Eco47I GGWCC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 326, 383
EcoICRI GAGCTC 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 471, 530
EcoT38I GRGCYC 2 cut(s) 23, 524
EgeI GGCGCC 3 cut(s) 130, 268, 280
EheI GGCGCC 3 cut(s) 130, 268, 280
Esp3I CGTCTC 5 cut(s) 295, 376, 449, 609, 615
FaeI CATG 1 cut(s) 683
FaiI YATR 4 cut(s) 416, 434, 488, 681
FaqI GGGAC 1 cut(s) 677
FatI CATG 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 112, 139, 493
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 2 cut(s) 23, 524
Fsp4HI GCNGC 3 cut(s) 112, 139, 493
GlaI GCGC 6 cut(s) 130, 137, 175, 268, 280, 464
GluI GCNGC 3 cut(s) 112, 139, 493
GsaI CCCAGC 3 cut(s) 111, 136, 319
HaeII RGCGCY 6 cut(s) 132, 139, 177, 270, 282, 466
HaeIII GGCC 3 cut(s) 194, 311, 471
HapII CCGG 6 cut(s) 63, 216, 496, 578, 638, 671
HgaI GACGC 6 cut(s) 41, 230, 244, 431, 559, 692
HhaI GCGC 6 cut(s) 131, 138, 176, 269, 281, 465
Hin1I GRCGYC 7 cut(s) 129, 222, 267, 279, 288, 369, 627
Hin1II CATG 1 cut(s) 683
Hin6I GCGC 6 cut(s) 129, 136, 174, 267, 279, 463
HinP1I GCGC 6 cut(s) 129, 136, 174, 267, 279, 463
HinfI GANTC 2 cut(s) 329, 650
HpaII CCGG 6 cut(s) 63, 216, 496, 578, 638, 671
HphI GGTGA 2 cut(s) 340, 346
Hpy166II GTNNAC 2 cut(s) 562, 658
Hpy188I TCNGA 6 cut(s) 12, 43, 334, 396, 506, 601
Hpy188III TCNNGA 2 cut(s) 145, 383
Hpy8I GTNNAC 2 cut(s) 562, 658
HpyAV CCTTC 3 cut(s) 187, 415, 430
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 4 cut(s) 240, 288, 369, 627
HpyCH4V TGCA 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 171, 252
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 4 cut(s) 240, 288, 369, 627
Hsp92I GRCGYC 7 cut(s) 129, 222, 267, 279, 288, 369, 627
Hsp92II CATG 1 cut(s) 683
HspAI GCGC 6 cut(s) 129, 136, 174, 267, 279, 463
KasI GGCGCC 3 cut(s) 128, 266, 278
KroI GCCGGC 1 cut(s) 637
KroNI GCCGGC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 72, 147, 157, 396, 408
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 4 cut(s) 439, 506, 519, 527
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 1 cut(s) 150
MaeII ACGT 4 cut(s) 240, 288, 369, 627
MaeIII GTNAC 1 cut(s) 548
MalI GATC 5 cut(s) 74, 149, 159, 398, 410
MboI GATC 5 cut(s) 72, 147, 157, 396, 408
MboII GAAGA 3 cut(s) 25, 28, 30
MflI RGATCY 2 cut(s) 396, 408
MhlI GDGCHC 3 cut(s) 23, 524, 564
Mly113I GGCGCC 3 cut(s) 129, 267, 279
MlyI GAGTC 2 cut(s) 338, 644
MmeI TCCRAC 2 cut(s) 106, 549
MroNI GCCGGC 1 cut(s) 637
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 6 cut(s) 63, 216, 496, 578, 638, 671
MspR9I CCNGG 4 cut(s) 216, 473, 497, 532
MvaI CCWGG 2 cut(s) 473, 532
MwoI GCNNNNNNNGC 3 cut(s) 135, 171, 252
NaeI GCCGGC 1 cut(s) 639
NarI GGCGCC 3 cut(s) 129, 267, 279
NciI CCSGG 2 cut(s) 216, 497
NdeII GATC 5 cut(s) 72, 147, 157, 396, 408
NgoMIV GCCGGC 1 cut(s) 637
NlaIII CATG 1 cut(s) 683
NlaIV GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
NmeAIII GCCGAG 2 cut(s) 47, 447
NmuCI GTSAC 1 cut(s) 548
PaeR7I CTCGAG 2 cut(s) 326, 383
PceI AGGCCT 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 162, 624
PdiI GCCGGC 1 cut(s) 639
PflFI GACNNNGTC 2 cut(s) 224, 626
PkrI GCNGC 3 cut(s) 113, 140, 494
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 337, 644
PluTI GGCGCC 3 cut(s) 132, 270, 282
PpsI GAGTC 2 cut(s) 337, 644
Psp124BI GAGCTC 1 cut(s) 524
Psp6I CCWGG 2 cut(s) 471, 530
PspFI CCCAGC 3 cut(s) 107, 132, 315
PspGI CCWGG 2 cut(s) 471, 530
PspN4I GGNNCC 6 cut(s) 115, 130, 268, 280, 398, 508
PspPI GGNCC 2 cut(s) 192, 424
PspXI VCTCGAGB 1 cut(s) 326
PsuI RGATCY 2 cut(s) 396, 408
PsyI GACNNNGTC 2 cut(s) 224, 626
PvuI CGATCG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 3 cut(s) 112, 139, 493
Sau3AI GATC 5 cut(s) 72, 147, 157, 396, 408
Sau96I GGNCC 2 cut(s) 192, 424
SchI GAGTC 2 cut(s) 338, 644
ScrFI CCNGG 4 cut(s) 216, 473, 497, 532
SduI GDGCHC 3 cut(s) 23, 524, 564
SfaNI GCATC 1 cut(s) 150
SfoI GGCGCC 3 cut(s) 130, 268, 280
Sfr274I CTCGAG 2 cut(s) 326, 383
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 2 cut(s) 326, 383
SmlI CTYRAG 2 cut(s) 326, 383
SmoI CTYRAG 2 cut(s) 326, 383
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 5 cut(s) 111, 139, 211, 244, 517
SspDI GGCGCC 3 cut(s) 128, 266, 278
SstI GAGCTC 1 cut(s) 524
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 4 cut(s) 214, 471, 495, 530
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 4 cut(s) 243, 291, 372, 630
TaqI TCGA 5 cut(s) 156, 327, 339, 384, 459
TauI GCSGC 2 cut(s) 114, 141
TscAI CASTG 1 cut(s) 572
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 3 cut(s) 627, 633, 716
TspRI CASTG 1 cut(s) 572
Tth111I GACNNNGTC 2 cut(s) 224, 626
VneI GTGCAC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 424
XhoI CTCGAG 2 cut(s) 326, 383
ZraI GACGTC 3 cut(s) 289, 370, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.