FvH4_3g03650

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001958
Physical Location & Seq
Reverse (-)
2047356 .. 2051306
3951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03650.t3

Sequence Viewer

Length: 687 bp
ATGGCTTCTCCGATAAAGAGCCCATCATCTTCAGAACCAGAGCGCCACCACTCCGCCTCCGCGATCGTCGTCCAACCCACCTCCCCGCGCTTCCCTCCCACCGGCACCCCCACCTCCGGTGCCCAGCGCCGCATTGGCATCGCCGTCGACCTCAGCGACGAGAGCGCCTTCGCCGTCACCTGGGCCGTCCAGAACTACCTCCGCCCCGGCGATGCCGTCGTCCTCCTCCACGTCCGCCCCACCTCCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCGTCCCTTCCGACGAGGCCTCCCAGCAGAAACTCGAGTCCGATTTCGACCGCTTCACCGTCACCAAAGCCAACGACCTCGCCAAGCCTCTCGGCGAGGCCAAGATCCCGTTCAAGATCCACATCGTGAAGGATCACGACTTGAAGGAGCGGCTCTGCTTGGAGGTCGAGCGGCTTGGTCTGATCGCCGTCATTATGGGCAGCCGGGGCTTCGGAGCCACGCGGCGGAGCTCCAATGCTAGGCTCGGCAGTGTTAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATTGTCGTTAGATTCTCCGATGTGGAGGACGGAGACGACAATGCCGTAAAGGTTTATGAAGAGGAGCCGGAGTTCCATGACGCTTTGGATAAAGATACGGATAAGGTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

229

Amino Acids

24.91

Weight (kDa)

5.48

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 43 - 195 3e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 4 cut(s) 104, 119, 257, 269
AccBSI CCGCTC 2 cut(s) 433, 454
AccI GTMKAC 1 cut(s) 147
AccII CGCG 3 cut(s) 62, 88, 505
AclWI GGATC 3 cut(s) 382, 394, 423
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 3 cut(s) 258, 270, 279
AdeI CACNNNGTG 1 cut(s) 409
AfiI CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
AgsI TTSAA 2 cut(s) 397, 427
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 1 cut(s) 513
AluI AGCT 1 cut(s) 513
Alw21I GWGCWC 2 cut(s) 515, 555
Alw26I GTCTC 2 cut(s) 286, 600
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 3 cut(s) 382, 394, 423
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 3 cut(s) 183, 300, 381
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 483
AspLEI GCGC 6 cut(s) 45, 90, 129, 167, 260, 272
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 2 cut(s) 207, 488
AsuHPI GGTGA 3 cut(s) 169, 331, 337
AvaI CYCGRG 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 124, 555
BanI GGYRCC 4 cut(s) 104, 119, 257, 269
BanII GRGCYC 2 cut(s) 23, 515
Bbv12I GWGCWC 2 cut(s) 515, 555
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 31
BceAI ACGGC 7 cut(s) 128, 158, 170, 200, 271, 455, 602
BcgI CGANNNNNNTGC 4 cut(s) 121, 127, 155, 161
BciT130I CCWGG 1 cut(s) 181
BcnI CCSGG 2 cut(s) 207, 488
BcoDI GTCTC 2 cut(s) 286, 600
BfaI CTAG 1 cut(s) 522
BfoI RGCGCY 5 cut(s) 46, 130, 168, 261, 273
BglI GCCNNNNNGGC 1 cut(s) 135
BisI GCNGC 5 cut(s) 130, 434, 455, 484, 506
BlsI GCNGC 5 cut(s) 131, 435, 456, 485, 507
Bme1390I CCNGG 3 cut(s) 181, 207, 488
BmeT110I CYCGRG 1 cut(s) 317
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 6 cut(s) 106, 121, 259, 271, 499, 639
BmrFI CCNGG 3 cut(s) 181, 207, 488
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 147, 202
BmuI ACTGGG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 207, 488
BsaBI GATNNNNATC 1 cut(s) 404
BsaHI GRCGYC 3 cut(s) 258, 270, 279
BsaJI CCNNGG 3 cut(s) 180, 205, 487
BsaWI WCCGGW 2 cut(s) 116, 568
BsaXI ACNNNNNCTCC 6 cut(s) 41, 71, 287, 317, 629, 659
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 404
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 180, 205, 487
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 215, 650
BseSI GKGCMC 2 cut(s) 124, 555
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 2 cut(s) 123, 306
Bsh1236I CGCG 3 cut(s) 62, 88, 505
Bsh1285I CGRYCG 2 cut(s) 66, 334
BshFI GGCC 3 cut(s) 185, 302, 383
BshNI GGYRCC 4 cut(s) 104, 119, 257, 269
BsiEI CGRYCG 2 cut(s) 66, 334
BsiHKAI GWGCWC 2 cut(s) 515, 555
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 6 cut(s) 102, 117, 207, 487, 569, 641
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 5 cut(s) 101, 116, 180, 507, 522
BsmAI GTCTC 2 cut(s) 286, 600
BsmBI CGTCTC 2 cut(s) 286, 600
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 3 cut(s) 185, 302, 383
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 4 cut(s) 23, 124, 515, 555
Bsp143I GATC 5 cut(s) 63, 387, 399, 415, 465
BspANI GGCC 3 cut(s) 185, 302, 383
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 3 cut(s) 62, 88, 505
BspLI GGNNCC 6 cut(s) 106, 121, 259, 271, 499, 639
BspPI GGATC 3 cut(s) 382, 394, 423
BspT107I GGYRCC 4 cut(s) 104, 119, 257, 269
BsrBI CCGCTC 2 cut(s) 433, 454
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 180, 205, 487
BssMI GATC 5 cut(s) 63, 387, 399, 415, 465
BssNI GRCGYC 3 cut(s) 258, 270, 279
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 343, 548
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 3 cut(s) 258, 270, 279
BstDEI CTNAG 1 cut(s) 152
BstFNI CGCG 3 cut(s) 62, 88, 505
BstH2I RGCGCY 5 cut(s) 46, 130, 168, 261, 273
BstHHI GCGC 6 cut(s) 45, 90, 129, 167, 260, 272
BstKTI GATC 5 cut(s) 66, 390, 402, 418, 468
BstMAI GTCTC 2 cut(s) 286, 600
BstMBI GATC 5 cut(s) 63, 387, 399, 415, 465
BstMCI CGRYCG 2 cut(s) 66, 334
BstMWI GCNNNNNNNGC 3 cut(s) 135, 162, 489
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 179, 205, 486
BstSLI GKGCMC 2 cut(s) 124, 555
BstUI CGCG 3 cut(s) 62, 88, 505
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 387, 399
BstYI RGATCY 2 cut(s) 387, 399
BsuRI GGCC 3 cut(s) 185, 302, 383
BtgZI GCGATG 2 cut(s) 124, 225
BtrI CACGTC 1 cut(s) 232
BtsI GCAGTG 2 cut(s) 538, 556
BtsIMutI CAGTG 2 cut(s) 538, 556
CfoI GCGC 6 cut(s) 45, 90, 129, 167, 260, 272
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 2 cut(s) 550, 662
CviAII CATG 1 cut(s) 650
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 2 cut(s) 259, 271
DpnI GATC 5 cut(s) 65, 389, 401, 417, 467
DpnII GATC 5 cut(s) 63, 387, 399, 415, 465
DraIII CACNNNGTG 1 cut(s) 409
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 4 cut(s) 43, 191, 224, 523
Ecl136II GAGCTC 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 23, 515
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 179
EcoT38I GRGCYC 2 cut(s) 23, 515
EgeI GGCGCC 2 cut(s) 259, 271
EheI GGCGCC 2 cut(s) 259, 271
Esp3I CGTCTC 2 cut(s) 286, 600
FaeI CATG 1 cut(s) 653
FaiI YATR 3 cut(s) 479, 630, 651
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 649
FauI CCCGC 1 cut(s) 93
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 5 cut(s) 130, 434, 455, 484, 506
FriOI GRGCYC 2 cut(s) 23, 515
Fsp4HI GCNGC 5 cut(s) 130, 434, 455, 484, 506
FspBI CTAG 1 cut(s) 522
GlaI GCGC 6 cut(s) 44, 89, 128, 166, 259, 271
GluI GCNGC 5 cut(s) 130, 434, 455, 484, 506
GsaI CCCAGC 2 cut(s) 127, 310
HaeII RGCGCY 5 cut(s) 46, 130, 168, 261, 273
HaeIII GGCC 3 cut(s) 185, 302, 383
HapII CCGG 6 cut(s) 102, 117, 207, 487, 569, 641
HgaI GACGC 2 cut(s) 550, 662
HhaI GCGC 6 cut(s) 45, 90, 129, 167, 260, 272
Hin1I GRCGYC 3 cut(s) 258, 270, 279
Hin1II CATG 1 cut(s) 653
Hin6I GCGC 6 cut(s) 43, 88, 127, 165, 258, 270
HinP1I GCGC 6 cut(s) 43, 88, 127, 165, 258, 270
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 320, 585
HpaII CCGG 6 cut(s) 102, 117, 207, 487, 569, 641
HphI GGTGA 3 cut(s) 169, 331, 337
Hpy166II GTNNAC 2 cut(s) 148, 553
Hpy188I TCNGA 7 cut(s) 12, 34, 295, 325, 465, 497, 592
Hpy188III TCNNGA 4 cut(s) 190, 397, 409, 419
Hpy8I GTNNAC 2 cut(s) 148, 553
Hpy99I CGWCG 6 cut(s) 71, 149, 161, 221, 281, 299
HpyAV CCTTC 4 cut(s) 178, 300, 406, 421
HpyCH4III ACNGT 2 cut(s) 343, 548
HpyCH4IV ACGT 2 cut(s) 231, 279
HpyCH4V TGCA 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 162, 489
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 231, 279
Hsp92I GRCGYC 3 cut(s) 258, 270, 279
Hsp92II CATG 1 cut(s) 653
HspAI GCGC 6 cut(s) 43, 88, 127, 165, 258, 270
KasI GGCGCC 2 cut(s) 257, 269
Kzo9I GATC 5 cut(s) 63, 387, 399, 415, 465
LmnI GCTCC 5 cut(s) 430, 497, 510, 518, 637
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 2 cut(s) 147, 202
MaeI CTAG 1 cut(s) 522
MaeII ACGT 2 cut(s) 231, 279
MaeIII GTNAC 3 cut(s) 175, 343, 539
MalI GATC 5 cut(s) 65, 389, 401, 417, 467
MbiI CCGCTC 2 cut(s) 433, 454
MboI GATC 5 cut(s) 63, 387, 399, 415, 465
MboII GAAGA 2 cut(s) 21, 644
MflI RGATCY 2 cut(s) 387, 399
MhlI GDGCHC 4 cut(s) 23, 124, 515, 555
Mly113I GGCGCC 2 cut(s) 258, 270
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 97, 318
MspI CCGG 6 cut(s) 102, 117, 207, 487, 569, 641
MspR9I CCNGG 3 cut(s) 181, 207, 488
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 3 cut(s) 62, 88, 505
MwoI GCNNNNNNNGC 3 cut(s) 135, 162, 489
NarI GGCGCC 2 cut(s) 258, 270
NciI CCSGG 2 cut(s) 207, 488
NdeII GATC 5 cut(s) 63, 387, 399, 415, 465
NlaIII CATG 1 cut(s) 653
NlaIV GGNNCC 6 cut(s) 106, 121, 259, 271, 499, 639
NmeAIII GCCGAG 2 cut(s) 354, 507
NmuCI GTSAC 3 cut(s) 175, 343, 539
PaeR7I CTCGAG 1 cut(s) 317
PceI AGGCCT 1 cut(s) 302
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 615
PfeI GAWTC 1 cut(s) 585
PkrI GCNGC 5 cut(s) 131, 435, 456, 485, 507
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 1 cut(s) 328
PluTI GGCGCC 2 cut(s) 261, 273
PpsI GAGTC 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 179
PspFI CCCAGC 2 cut(s) 123, 306
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 6 cut(s) 106, 121, 259, 271, 499, 639
PspPI GGNCC 1 cut(s) 183
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 2 cut(s) 387, 399
PvuI CGATCG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 515
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 5 cut(s) 130, 434, 455, 484, 506
Sau3AI GATC 5 cut(s) 63, 387, 399, 415, 465
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 3 cut(s) 181, 207, 488
SduI GDGCHC 4 cut(s) 23, 124, 515, 555
SfaNI GCATC 2 cut(s) 147, 202
SfoI GGCGCC 2 cut(s) 259, 271
Sfr274I CTCGAG 1 cut(s) 317
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SseBI AGGCCT 1 cut(s) 302
SspDI GGCGCC 2 cut(s) 257, 269
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 515
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 3 cut(s) 179, 205, 486
TaaI ACNGT 2 cut(s) 343, 548
TaiI ACGT 2 cut(s) 234, 282
TaqI TCGA 4 cut(s) 147, 318, 330, 450
TauI GCSGC 4 cut(s) 132, 436, 457, 508
TfiI GAWTC 1 cut(s) 585
TscAI CASTG 2 cut(s) 538, 563
TseFI GTSAC 3 cut(s) 175, 343, 539
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 3 cut(s) 175, 343, 539
TspDTI ATGAA 1 cut(s) 645
TspGWI ACGGA 4 cut(s) 235, 274, 618, 686
TspRI CASTG 2 cut(s) 538, 563
VneI GTGCAC 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 522
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.