Rh5DG199600

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001958
Physical Location & Seq
Forward (+)
22192560 .. 22192793
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG199600.1

Sequence Viewer

Length: 234 bp
ATGCTCATGGGCAGCTGGGAGTTCGGAGCCACCAAGCGGAGCTCGAACGCCAGGCTCGGCAGTGTCAGCGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATAGTCATTAGGTTTTCTGATGACAAGAAGGAGATGGAGATGACGTTGTACAGTCGGCGAGGTTTGACTATTCACGAGGAAGAGTCGGAGTTCCATGACGCTTTGGGTAAAGGTCAGCATTGTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

77

Amino Acids

8.73

Weight (kDa)

6.17

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 9 - 38 7.3e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 36
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 2 cut(s) 15, 42
AluI AGCT 2 cut(s) 15, 42
Alw21I GWGCWC 3 cut(s) 44, 84, 229
Alw44I GTGCAC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 44
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 3 cut(s) 44, 84, 229
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 52
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 52
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 44, 84, 229
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 44, 84, 229
Bsp1407I TGTACA 1 cut(s) 150
BspACI CCGC 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 150
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 77, 155
Bst6I CTCTTC 1 cut(s) 177
BstAUI TGTACA 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 24
BtsI GCAGTG 2 cut(s) 67, 85
BtsIMutI CAGTG 2 cut(s) 67, 85
CseI GACGC 2 cut(s) 79, 209
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 7, 197
CviJI RGCY 4 cut(s) 15, 29, 42, 55
CviKI_1 RGCY 4 cut(s) 15, 29, 42, 55
CviQI GTAC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 2 cut(s) 10, 200
FaiI YATR 3 cut(s) 8, 104, 198
FatI CATG 2 cut(s) 6, 196
Fnu4HI GCNGC 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 19
HapII CCGG 1 cut(s) 98
HgaI GACGC 2 cut(s) 79, 209
Hin1II CATG 2 cut(s) 10, 200
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 26, 121, 190
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 77, 155
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 2 cut(s) 10, 200
LmnI GCTCC 2 cut(s) 26, 39
LpnPI CCDG 3 cut(s) 37, 64, 111
Lsp1109I GCAGC 1 cut(s) 24
MaeII ACGT 1 cut(s) 146
MboII GAAGA 1 cut(s) 194
MhlI GDGCHC 3 cut(s) 44, 84, 229
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 155, 172
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 66
NlaIII CATG 2 cut(s) 10, 200
NlaIV GGNNCC 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 36
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 15
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SacI GAGCTC 1 cut(s) 44
SatI GCNGC 1 cut(s) 13
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 3 cut(s) 44, 84, 229
SetI ASST 6 cut(s) 17, 44, 116, 149, 166, 217
SsiI CCGC 1 cut(s) 37
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 2 cut(s) 77, 155
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 44
TatI WGTACW 1 cut(s) 150
TscAI CASTG 2 cut(s) 67, 92
TseI GCWGC 1 cut(s) 12
TspRI CASTG 2 cut(s) 67, 92
VneI GTGCAC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.