MD17G1087300.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001958
Physical Location & Seq
Forward (+)
7196903 .. 7198053
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1087300.v1.1.491

Sequence Viewer

Length: 699 bp
ATGAACCCGCCACCGCCCGTACACATCCAACTCTCCTCCCCGGGCTTTCCGCCAGCCACCACGATCACCCCAACACCTGATGGGACCCACCGGAAGGTCGCGATCGCCGTTGATTTAAGTGAGGAGAGCGCCTTCGCCGTCCGATGGGCCGTCCAGAACTACCTCCGACCCGGGGACACCGTCATCCTCCTCCACGTTCGACCCACCAGCGTCCTCTACGGCGCCGACTGGGGATCCGTTGACCCCAACGACGCCGTCTCCTCCTTCTCTGAGTCGCAGCAGAAATTGGAGGACGACTTCGACGCCTTCACCACTACCAAGGCGGCCGACCTGGCGCAGCCGTTAGTGGAGGCGCAATTTCCGTTCAAAATCCACATAGTGAAGGACCACGACATGAAGGAGCGGCTCTGCTTGGAAGTCGAGAGGCTCCGGCTCAGCGTCGTCATCATGGGCAGCCGCGGCTTCGGCGCCGCCAAGCGAGCCCCCAAGGTCGGCAGGCTCGGCAGCGTCACTGACTACTGTGTTCACCACTGTGTTTGTCCAGTTGTGGTCGTGAGGTATCCTGATGACTCGGACGGGTTGGGCCCTGGCGGCGAACCCGATACCCCGGTGGATCTCCACCCGGTGCCGGAGGAGGATCCGGAGGACTTCAATGAAGGCTCCTCCTCCGACAACGATGATGCGCATGAAATCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

233

Amino Acids

25.26

Weight (kDa)

4.68

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 31 - 186 3.2e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 684
AccB1I GGYRCC 3 cut(s) 221, 467, 625
AccBSI CCGCTC 1 cut(s) 403
AccII CGCG 2 cut(s) 101, 459
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 9 cut(s) 8, 14, 50, 323, 403, 457, 459, 471, 591
AclWI GGATC 5 cut(s) 228, 241, 621, 632, 645
AcoI YGGCCR 1 cut(s) 324
AcyI GRCGYC 4 cut(s) 222, 252, 303, 468
AdeI CACNNNGTG 2 cut(s) 379, 625
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 5 cut(s) 94, 144, 172, 491, 628
AgsI TTSAA 2 cut(s) 367, 652
AjnI CCWGG 2 cut(s) 330, 586
AleI CACNNNNGTG 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 5 cut(s) 228, 241, 621, 632, 645
Ama87I CYCGRG 2 cut(s) 40, 170
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 3 cut(s) 147, 324, 583
ApaI GGGCCC 1 cut(s) 587
ApeKI GCWGC 4 cut(s) 277, 337, 453, 504
AsiSI GCGATCGC 1 cut(s) 105
AspLEI GCGC 6 cut(s) 131, 224, 337, 355, 470, 685
AspS9I GGNCC 5 cut(s) 84, 147, 385, 583, 584
AsuC2I CCSGG 6 cut(s) 41, 42, 171, 172, 608, 623
AsuHPI GGTGA 3 cut(s) 58, 301, 518
AvaI CYCGRG 2 cut(s) 40, 170
AvaII GGWCC 2 cut(s) 84, 385
BaeGI GKGCMC 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BamHI GGATCC 2 cut(s) 233, 637
BanI GGYRCC 3 cut(s) 221, 467, 625
BanII GRGCYC 2 cut(s) 484, 587
BbvI GCAGC 4 cut(s) 289, 349, 465, 516
BccI CCATC 2 cut(s) 74, 138
BceAI ACGGC 6 cut(s) 92, 122, 134, 235, 239, 325
BciT130I CCWGG 2 cut(s) 332, 588
BciVI GTATCC 1 cut(s) 570
BcnI CCSGG 6 cut(s) 41, 42, 171, 172, 608, 623
BcoDI GTCTC 1 cut(s) 262
BfoI RGCGCY 3 cut(s) 132, 225, 471
BfuI GTATCC 1 cut(s) 570
BglI GCCNNNNNGGC 2 cut(s) 332, 591
BlpI GCTNAGC 1 cut(s) 434
Bme1390I CCNGG 8 cut(s) 41, 42, 171, 172, 332, 588, 608, 623
Bme18I GGWCC 2 cut(s) 84, 385
BmeT110I CYCGRG 2 cut(s) 40, 170
BmgT120I GGNCC 5 cut(s) 84, 147, 385, 583, 584
BmrFI CCNGG 8 cut(s) 41, 42, 171, 172, 332, 588, 608, 623
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 670
BmuI ACTGGG 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 434
BpuMI CCSGG 6 cut(s) 41, 42, 171, 172, 608, 623
BsaHI GRCGYC 4 cut(s) 222, 252, 303, 468
BsaJI CCNNGG 9 cut(s) 39, 40, 170, 171, 318, 457, 486, 586, 606
BsaWI WCCGGW 2 cut(s) 90, 640
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 144, 172, 491, 628
Bse1I ACTGG 2 cut(s) 233, 542
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 2 cut(s) 332, 588
BseDI CCNNGG 9 cut(s) 39, 40, 170, 171, 318, 457, 486, 586, 606
BseGI GGATG 2 cut(s) 24, 183
BseLI CCNNNNNNNGG 5 cut(s) 94, 144, 172, 491, 628
BseMII CTCAG 2 cut(s) 261, 448
BseNI ACTGG 2 cut(s) 233, 542
BseRI GAGGAG 7 cut(s) 25, 137, 179, 250, 647, 652, 655
BseSI GKGCMC 1 cut(s) 587
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 4 cut(s) 289, 349, 465, 516
Bsh1236I CGCG 2 cut(s) 101, 459
Bsh1285I CGRYCG 2 cut(s) 105, 327
BshFI GGCC 3 cut(s) 149, 326, 585
BshNI GGYRCC 3 cut(s) 221, 467, 625
BsiEI CGRYCG 2 cut(s) 105, 327
BsiHKCI CYCGRG 2 cut(s) 40, 170
BsiSI CCGG 8 cut(s) 41, 91, 171, 430, 608, 623, 629, 641
BslFI GGGAC 2 cut(s) 97, 188
BslI CCNNNNNNNGG 5 cut(s) 94, 144, 172, 491, 628
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 2 cut(s) 97, 188
BsnI GGCC 3 cut(s) 149, 326, 585
BsoBI CYCGRG 2 cut(s) 40, 170
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 2 cut(s) 484, 587
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 5 cut(s) 63, 102, 233, 613, 637
Bsp1720I GCTNAGC 1 cut(s) 434
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 9 cut(s) 8, 14, 50, 323, 403, 457, 459, 471, 591
BspANI GGCC 3 cut(s) 149, 326, 585
BspCNI CTCAG 2 cut(s) 262, 447
BspEI TCCGGA 1 cut(s) 640
BspFNI CGCG 2 cut(s) 101, 459
BspPI GGATC 5 cut(s) 228, 241, 621, 632, 645
BspT107I GGYRCC 3 cut(s) 221, 467, 625
BsrBI CCGCTC 1 cut(s) 403
BsrI ACTGG 2 cut(s) 233, 542
BssECI CCNNGG 9 cut(s) 39, 40, 170, 171, 318, 457, 486, 586, 606
BssMI GATC 5 cut(s) 63, 102, 233, 613, 637
BssNI GRCGYC 4 cut(s) 222, 252, 303, 468
BssT1I CCWWGG 2 cut(s) 318, 486
Bst2UI CCWGG 2 cut(s) 332, 588
Bst4CI ACNGT 3 cut(s) 181, 521, 533
BstACI GRCGYC 4 cut(s) 222, 252, 303, 468
BstC8I GCNNGC 3 cut(s) 54, 480, 497
BstDEI CTNAG 2 cut(s) 270, 434
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 24, 183
BstFNI CGCG 2 cut(s) 101, 459
BstH2I RGCGCY 3 cut(s) 132, 225, 471
BstHHI GCGC 6 cut(s) 131, 224, 337, 355, 470, 685
BstKTI GATC 5 cut(s) 66, 105, 236, 616, 640
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 5 cut(s) 63, 102, 233, 613, 637
BstMCI CGRYCG 2 cut(s) 105, 327
BstMWI GCNNNNNNNGC 6 cut(s) 332, 459, 465, 479, 501, 591
BstNI CCWGG 2 cut(s) 332, 588
BstSCI CCNGG 8 cut(s) 39, 40, 169, 170, 330, 586, 606, 621
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 2 cut(s) 101, 459
BstV1I GCAGC 4 cut(s) 289, 349, 465, 516
BstX2I RGATCY 3 cut(s) 233, 613, 637
BstYI RGATCY 3 cut(s) 233, 613, 637
BstZI CGGCCG 1 cut(s) 324
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 3 cut(s) 149, 326, 585
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 24, 183
BtsIMutI CAGTG 2 cut(s) 510, 529
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 3 cut(s) 54, 480, 497
CfoI GCGC 6 cut(s) 131, 224, 337, 355, 470, 685
Cfr13I GGNCC 5 cut(s) 84, 147, 385, 583, 584
Cfr42I CCGCGG 1 cut(s) 460
Cfr9I CCCGGG 2 cut(s) 40, 170
CseI GACGC 5 cut(s) 199, 260, 311, 427, 496
Csp6I GTAC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 518, 553
CviAII CATG 3 cut(s) 394, 448, 686
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 270, 434
DinI GGCGCC 2 cut(s) 223, 469
DpnI GATC 5 cut(s) 65, 104, 235, 615, 639
DpnII GATC 5 cut(s) 63, 102, 233, 613, 637
DraIII CACNNNGTG 2 cut(s) 379, 625
EaeI YGGCCR 1 cut(s) 324
EagI CGGCCG 1 cut(s) 324
EciI GGCGGA 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 318, 486
Eco24I GRGCYC 2 cut(s) 484, 587
Eco47I GGWCC 2 cut(s) 84, 385
Eco52I CGGCCG 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 40, 170
EcoO109I RGGNCCY 2 cut(s) 84, 584
EcoRII CCWGG 2 cut(s) 330, 586
EcoT14I CCWWGG 2 cut(s) 318, 486
EcoT38I GRGCYC 2 cut(s) 484, 587
EgeI GGCGCC 2 cut(s) 223, 469
EheI GGCGCC 2 cut(s) 223, 469
ErhI CCWWGG 2 cut(s) 318, 486
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 3 cut(s) 397, 451, 689
FaiI YATR 4 cut(s) 377, 395, 449, 687
FaqI GGGAC 2 cut(s) 97, 188
FatI CATG 3 cut(s) 393, 447, 685
FauI CCCGC 1 cut(s) 15
FokI GGATG 2 cut(s) 11, 170
FriOI GRGCYC 2 cut(s) 484, 587
FspAI RTGCGCAY 1 cut(s) 684
FspI TGCGCA 1 cut(s) 684
GlaI GCGC 6 cut(s) 130, 223, 336, 354, 469, 684
HaeII RGCGCY 3 cut(s) 132, 225, 471
HaeIII GGCC 3 cut(s) 149, 326, 585
HapII CCGG 8 cut(s) 41, 91, 171, 430, 608, 623, 629, 641
HgaI GACGC 5 cut(s) 199, 260, 311, 427, 496
HhaI GCGC 6 cut(s) 131, 224, 337, 355, 470, 685
Hin1I GRCGYC 4 cut(s) 222, 252, 303, 468
Hin1II CATG 3 cut(s) 397, 451, 689
Hin6I GCGC 6 cut(s) 129, 222, 335, 353, 468, 683
HinP1I GCGC 6 cut(s) 129, 222, 335, 353, 468, 683
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 272, 569
HpaII CCGG 8 cut(s) 41, 91, 171, 430, 608, 623, 629, 641
HphI GGTGA 3 cut(s) 58, 301, 518
Hpy166II GTNNAC 3 cut(s) 22, 241, 526
Hpy188I TCNGA 5 cut(s) 143, 167, 271, 574, 670
Hpy188III TCNNGA 6 cut(s) 100, 154, 421, 553, 563, 641
Hpy8I GTNNAC 3 cut(s) 22, 241, 526
Hpy99I CGWCG 3 cut(s) 254, 305, 443
HpyAV CCTTC 7 cut(s) 88, 142, 274, 316, 376, 391, 650
HpyCH4III ACNGT 3 cut(s) 181, 521, 533
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 6 cut(s) 332, 459, 465, 479, 501, 591
HpyF3I CTNAG 2 cut(s) 270, 434
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 4 cut(s) 222, 252, 303, 468
Hsp92II CATG 3 cut(s) 397, 451, 689
HspAI GCGC 6 cut(s) 129, 222, 335, 353, 468, 683
KasI GGCGCC 2 cut(s) 221, 467
KflI GGGWCCC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 640
KspI CCGCGG 1 cut(s) 460
Kzo9I GATC 5 cut(s) 63, 102, 233, 613, 637
LmnI GCTCC 3 cut(s) 400, 432, 665
Lsp1109I GCAGC 4 cut(s) 289, 349, 465, 516
LweI GCATC 1 cut(s) 670
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 508
MalI GATC 5 cut(s) 65, 104, 235, 615, 639
MbiI CCGCTC 1 cut(s) 403
MboI GATC 5 cut(s) 63, 102, 233, 613, 637
MflI RGATCY 3 cut(s) 233, 613, 637
MhlI GDGCHC 2 cut(s) 484, 587
MluCI AATT 2 cut(s) 284, 356
Mly113I GGCGCC 2 cut(s) 222, 468
MlyI GAGTC 2 cut(s) 281, 563
MmeI TCCRAC 3 cut(s) 52, 190, 693
MroI TCCGGA 1 cut(s) 640
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 8 cut(s) 41, 91, 171, 430, 608, 623, 629, 641
MspR9I CCNGG 8 cut(s) 41, 42, 171, 172, 332, 588, 608, 623
MvaI CCWGG 2 cut(s) 332, 588
MvnI CGCG 2 cut(s) 101, 459
MwoI GCNNNNNNNGC 6 cut(s) 332, 459, 465, 479, 501, 591
NarI GGCGCC 2 cut(s) 222, 468
NciI CCSGG 6 cut(s) 41, 42, 171, 172, 608, 623
NdeII GATC 5 cut(s) 63, 102, 233, 613, 637
NlaIII CATG 3 cut(s) 397, 451, 689
NmeAIII GCCGAG 1 cut(s) 480
NmuCI GTSAC 1 cut(s) 508
NruI TCGCGA 1 cut(s) 101
NsbI TGCGCA 1 cut(s) 684
OliI CACNNNNGTG 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PflFI GACNNNGTC 2 cut(s) 179, 254
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 2 cut(s) 280, 563
PluTI GGCGCC 2 cut(s) 225, 471
PpsI GAGTC 2 cut(s) 280, 563
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 330, 586
PspGI CCWGG 2 cut(s) 330, 586
PspOMI GGGCCC 1 cut(s) 583
PspPI GGNCC 5 cut(s) 84, 147, 385, 583, 584
PspPPI RGGWCCY 1 cut(s) 84
PsuI RGATCY 3 cut(s) 233, 613, 637
PsyI GACNNNGTC 2 cut(s) 179, 254
PvuI CGATCG 1 cut(s) 105
RgaI GCGATCGC 1 cut(s) 105
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 531
SacII CCGCGG 1 cut(s) 460
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 5 cut(s) 63, 102, 233, 613, 637
Sau96I GGNCC 5 cut(s) 84, 147, 385, 583, 584
SchI GAGTC 2 cut(s) 281, 563
ScrFI CCNGG 8 cut(s) 41, 42, 171, 172, 332, 588, 608, 623
SduI GDGCHC 2 cut(s) 484, 587
SetI ASST 7 cut(s) 79, 99, 165, 198, 333, 492, 560
SfaAI GCGATCGC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 670
SfoI GGCGCC 2 cut(s) 223, 469
Sfr303I CCGCGG 1 cut(s) 460
SgfI GCGATCGC 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 460
SinI GGWCC 2 cut(s) 84, 385
SmaI CCCGGG 2 cut(s) 42, 172
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 2 cut(s) 284, 356
SsiI CCGC 9 cut(s) 8, 14, 50, 323, 403, 457, 459, 471, 591
SspDI GGCGCC 2 cut(s) 221, 467
StyD4I CCNGG 8 cut(s) 39, 40, 169, 170, 330, 586, 606, 621
StyI CCWWGG 2 cut(s) 318, 486
TaaI ACNGT 3 cut(s) 181, 521, 533
TaiI ACGT 1 cut(s) 198
TaqI TCGA 4 cut(s) 199, 300, 420, 693
TasI AATT 2 cut(s) 284, 356
TauI GCSGC 6 cut(s) 326, 406, 459, 462, 473, 594
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 517, 536
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 4 cut(s) 277, 337, 453, 504
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 3 cut(s) 17, 410, 669
TspGWI ACGGA 2 cut(s) 226, 351
TspMI CCCGGG 2 cut(s) 40, 170
TspRI CASTG 2 cut(s) 517, 536
Tth111I GACNNNGTC 2 cut(s) 179, 254
VpaK11BI GGWCC 2 cut(s) 84, 385
XmaI CCCGGG 2 cut(s) 40, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.