Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006420.1

Orthogroup ID

OG0001958

Physical Location & Seq

Genomic Coordinates Reverse (-)

167769 .. 168446

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006420.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaaccctcccgccgtacccagccaaccctcctcccctctcttcccgctctcgcccagtccccaccgcaaggtcgcgatcgccgtcgatttaagcgacgagagcgcctacgccgtccggtgggcggccgagcagtacctccgacccggcgacgccgtcgtcctcctccacgtgcgccccaccaccgtcctctacggcgccgactggggctgggtccccgtcgactacaccctccccgtcgccggcgacaagaaatcggaggacgacttcgacgcgttgaccacggccaaggcgacggagctggctcggccgctcgtggaggccggaatcgagttcaaaatccacatagtgaaggatcgcgacatgaaggagaggctgtgcttggaggtggagaggctcgggctcagcgccgtcattatgggcagccgagggttcggcgccacctccaagaggagcctcaagatggcgaggctcggaagcgtgtcggattactgtgtgcaacactgtgtgtgtccggtcgtggtggtgaggtgtcctgatgacgtggagcggaggtttggcggcagtggtggtggtagtgaagcggcggaggacgacgttctgcttccggtgccggaggaggaccaggaggacaatgaggacggtgagcctcgaggtttggctctctctctgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

225

Amino Acids

24.38

Weight (kDa)

4.79

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11360 AT1G11360 AT1G11360 AT1G11360
fragaria_vesca	FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_6g44300 FvH4_6g44300 FvH4_6g44300
malus_domestica	MD05G1329100.v1.1 MD09G1099000.v1.1 MD10G1306000.v1.1 MD17G1087300.v1.1
prunus_persica	Prupe.3G227200_v2.0.a1 Prupe.4G033700_v2.0.a1
pyrus_communis	pycom05g30240 pycom09g02270 pycom10g25830 pycom17g08450
rosa_chinensis	RchiOBHm_Chr2g0161161 RchiOBHm_Chr5g0005691
rosa_laevigata	RLG00000021263 RLG00000031318
rosa_multiflora	Rmu_co8321989.1_g000001 Rmu_sc0000570.1_g000027 Rmu_sc0006420.1_g000039
rosa_roxburghii	Rroxscaffold_1G00070150 Rroxscaffold_2G00089070
rosa_rugosa	Rorug02G0486700 Rorug04G0417300 Rorug04G0417300
rosa_samantha	Rh2AG553400 Rh2BG567100 Rh2CG537200 Rh2DG576400 Rh5AG199300 Rh5BG043600 Rh5CG217700 Rh5DG199600 Rh5DG199700
rosa_wichuraiana	Rw0G008360 Rw2G045770 Rw5G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AbsI	CCTCGAGG	1 cut(s)	651
AccB1I	GGYRCC	3 cut(s)	197, 437, 610
AccBSI	CCGCTC	3 cut(s)	49, 313, 550
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	3 cut(s)	77, 275, 360
AciI	CCGC	9 cut(s)	12, 47, 67, 125, 311, 550, 561, 584, 587
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	3 cut(s)	126, 285, 308
AcvI	CACGTG	1 cut(s)	172
AcyI	GRCGYC	3 cut(s)	153, 198, 438
AdeI	CACNNNGTG	2 cut(s)	349, 508
AfaI	GTAC	2 cut(s)	18, 137
AfiI	CCNNNNNNNGG	6 cut(s)	70, 120, 124, 242, 450, 463
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
AlwI	GGATC	1 cut(s)	363
Ama87I	CYCGRG	2 cut(s)	398, 651
AoxI	GGCC	4 cut(s)	126, 285, 308, 321
ApeKI	GCWGC	1 cut(s)	423
AsiSI	GCGATCGC	1 cut(s)	81
AspLEI	GCGC	5 cut(s)	107, 177, 200, 410, 440
AspS9I	GGNCC	2 cut(s)	214, 622
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	538, 656
AvaI	CYCGRG	2 cut(s)	398, 651
AvaII	GGWCC	2 cut(s)	214, 622
BanI	GGYRCC	3 cut(s)	197, 437, 610
BanII	GRGCYC	1 cut(s)	405
BauI	CACGAG	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	6 cut(s)	68, 98, 140, 211, 300, 395
BciT130I	CCWGG	1 cut(s)	626
BcnI	CCSGG	1 cut(s)	147
BfoI	RGCGCY	4 cut(s)	108, 201, 411, 441
BisI	GCNGC	5 cut(s)	126, 311, 424, 562, 585
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	5 cut(s)	127, 312, 425, 563, 586
Bme1390I	CCNGG	2 cut(s)	147, 626
Bme18I	GGWCC	2 cut(s)	214, 622
BmeT110I	CYCGRG	2 cut(s)	398, 651
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	214, 622
BmiI	GGNNCC	6 cut(s)	199, 215, 216, 439, 455, 612
BmrFI	CCNGG	2 cut(s)	147, 626
BmrI	ACTGGG	2 cut(s)	51, 214
BmuI	ACTGGG	2 cut(s)	51, 214
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	3 cut(s)	153, 198, 438
BsaJI	CCNNGG	3 cut(s)	282, 288, 427
BsaWI	WCCGGW	3 cut(s)	117, 514, 607
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 539, 569
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 120, 124, 242, 450, 463
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	57, 209
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	282, 288, 427
BseLI	CCNNNNNNNGG	6 cut(s)	70, 120, 124, 242, 450, 463
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	2 cut(s)	57, 209
BseRI	GAGGAG	4 cut(s)	22, 155, 466, 632
BseX3I	CGGCCG	2 cut(s)	126, 308
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	2 cut(s)	20, 210
Bsh1236I	CGCG	3 cut(s)	77, 275, 360
Bsh1285I	CGRYCG	4 cut(s)	81, 129, 311, 519
BshFI	GGCC	4 cut(s)	128, 287, 310, 323
BshNI	GGYRCC	3 cut(s)	197, 437, 610
BsiEI	CGRYCG	4 cut(s)	81, 129, 311, 519
BsiHKCI	CYCGRG	2 cut(s)	398, 651
BsiSI	CCGG	7 cut(s)	118, 147, 243, 324, 515, 608, 614
BslFI	GGGAC	2 cut(s)	45, 200
BslI	CCNNNNNNNGG	6 cut(s)	70, 120, 124, 242, 450, 463
BsmFI	GGGAC	2 cut(s)	45, 200
BsnI	GGCC	4 cut(s)	128, 287, 310, 323
BsoBI	CYCGRG	2 cut(s)	398, 651
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	78, 355
Bsp1720I	GCTNAGC	1 cut(s)	404
Bsp68I	TCGCGA	2 cut(s)	77, 360
BspACI	CCGC	9 cut(s)	12, 47, 67, 125, 311, 550, 561, 584, 587
BspANI	GGCC	4 cut(s)	128, 287, 310, 323
BspCNI	CTCAG	1 cut(s)	417
BspFNI	CGCG	3 cut(s)	77, 275, 360
BspLI	GGNNCC	6 cut(s)	199, 215, 216, 439, 455, 612
BspPI	GGATC	1 cut(s)	363
BspT107I	GGYRCC	3 cut(s)	197, 437, 610
BsrBI	CCGCTC	3 cut(s)	49, 313, 550
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	57, 209
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	282, 288, 427
BssMI	GATC	2 cut(s)	78, 355
BssNI	GRCGYC	3 cut(s)	153, 198, 438
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	4 cut(s)	187, 494, 506, 644
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	3 cut(s)	153, 198, 438
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	244, 303
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstFNI	CGCG	3 cut(s)	77, 275, 360
BstH2I	RGCGCY	4 cut(s)	108, 201, 411, 441
BstHHI	GCGC	5 cut(s)	107, 177, 200, 410, 440
BstKTI	GATC	2 cut(s)	81, 358
BstMBI	GATC	2 cut(s)	78, 355
BstMCI	CGRYCG	4 cut(s)	81, 129, 311, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 307, 610
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	145, 624
BstUI	CGCG	3 cut(s)	77, 275, 360
BstV1I	GCAGC	1 cut(s)	435
BstZI	CGGCCG	2 cut(s)	126, 308
BsuRI	GGCC	4 cut(s)	128, 287, 310, 323
BtgI	CCRYGG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	544
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	502, 571
BtuMI	TCGCGA	2 cut(s)	77, 360
Cac8I	GCNNGC	2 cut(s)	244, 303
CfoI	GCGC	5 cut(s)	107, 177, 200, 410, 440
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	214, 622
CseI	GACGC	2 cut(s)	161, 281
Csp6I	GTAC	2 cut(s)	17, 136
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	2 cut(s)	17, 136
DdeI	CTNAG	1 cut(s)	404
DinI	GGCGCC	2 cut(s)	199, 439
DpnI	GATC	2 cut(s)	80, 357
DpnII	GATC	2 cut(s)	78, 355
DraIII	CACNNNGTG	2 cut(s)	349, 508
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	3 cut(s)	126, 285, 308
EagI	CGGCCG	2 cut(s)	126, 308
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	602
EclXI	CGGCCG	2 cut(s)	126, 308
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	214, 622
Eco52I	CGGCCG	2 cut(s)	126, 308
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	2 cut(s)	398, 651
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	405
EgeI	GGCGCC	2 cut(s)	199, 439
EheI	GGCGCC	2 cut(s)	199, 439
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	367
FaiI	YATR	3 cut(s)	347, 365, 419
FaqI	GGGAC	2 cut(s)	45, 200
FatI	CATG	1 cut(s)	363
FauI	CCCGC	2 cut(s)	19, 54
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	126, 311, 424, 562, 585
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	5 cut(s)	126, 311, 424, 562, 585
GlaI	GCGC	5 cut(s)	106, 176, 199, 409, 439
GluI	GCNGC	5 cut(s)	126, 311, 424, 562, 585
GsaI	CCCAGC	2 cut(s)	24, 214
HaeII	RGCGCY	4 cut(s)	108, 201, 411, 441
HaeIII	GGCC	4 cut(s)	128, 287, 310, 323
HapII	CCGG	7 cut(s)	118, 147, 243, 324, 515, 608, 614
HgaI	GACGC	2 cut(s)	161, 281
HhaI	GCGC	5 cut(s)	107, 177, 200, 410, 440
Hin1I	GRCGYC	3 cut(s)	153, 198, 438
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	5 cut(s)	105, 175, 198, 408, 438
HinP1I	GCGC	5 cut(s)	105, 175, 198, 408, 438
HincII	GTYRAC	2 cut(s)	223, 279
HindII	GTYRAC	2 cut(s)	223, 279
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	7 cut(s)	118, 147, 243, 324, 515, 608, 614
HphI	GGTGA	2 cut(s)	538, 656
Hpy166II	GTNNAC	2 cut(s)	223, 279
Hpy188I	TCNGA	5 cut(s)	143, 259, 476, 487, 672
Hpy188III	TCNNGA	4 cut(s)	76, 359, 460, 536
Hpy8I	GTNNAC	2 cut(s)	223, 279
Hpy99I	CGWCG	9 cut(s)	89, 101, 155, 161, 224, 242, 275, 298, 599
HpyAV	CCTTC	2 cut(s)	346, 361
HpyCH4III	ACNGT	4 cut(s)	187, 494, 506, 644
HpyCH4IV	ACGT	3 cut(s)	171, 543, 597
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 307, 610
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	3 cut(s)	171, 543, 597
Hsp92I	GRCGYC	3 cut(s)	153, 198, 438
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	5 cut(s)	105, 175, 198, 408, 438
KasI	GGCGCC	2 cut(s)	197, 437
KflI	GGGWCCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	78, 355
LmnI	GCTCC	3 cut(s)	298, 453, 547
Lsp1109I	GCAGC	1 cut(s)	435
MaeII	ACGT	3 cut(s)	171, 543, 597
MalI	GATC	2 cut(s)	80, 357
MbiI	CCGCTC	3 cut(s)	49, 313, 550
MboI	GATC	2 cut(s)	78, 355
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	405
MluI	ACGCGT	1 cut(s)	273
Mly113I	GGCGCC	2 cut(s)	198, 438
MmeI	TCCRAC	2 cut(s)	166, 465
MreI	CGCCGGCG	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	242
MseI	TTAA	2 cut(s)	92, 676
MspI	CCGG	7 cut(s)	118, 147, 243, 324, 515, 608, 614
MspR9I	CCNGG	2 cut(s)	147, 626
MvaI	CCWGG	1 cut(s)	626
MvnI	CGCG	3 cut(s)	77, 275, 360
MwoI	GCNNNNNNNGC	3 cut(s)	102, 307, 610
NaeI	GCCGGC	1 cut(s)	244
NarI	GGCGCC	2 cut(s)	198, 438
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	78, 355
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	6 cut(s)	199, 215, 216, 439, 455, 612
NmeAIII	GCCGAG	3 cut(s)	154, 286, 452
NruI	TCGCGA	2 cut(s)	77, 360
PaeR7I	CTCGAG	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 93, 290
PdiI	GCCGGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	127, 312, 425, 563, 586
Ple19I	CGATCG	1 cut(s)	81
PluTI	GGCGCC	2 cut(s)	201, 441
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	624
PspCI	CACGTG	1 cut(s)	172
PspFI	CCCAGC	2 cut(s)	20, 210
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	6 cut(s)	199, 215, 216, 439, 455, 612
PspPI	GGNCC	2 cut(s)	214, 622
PspPPI	RGGWCCY	1 cut(s)	214
PspXI	VCTCGAGB	1 cut(s)	651
PsyI	GACNNNGTC	1 cut(s)	155
PvuI	CGATCG	1 cut(s)	81
RgaI	GCGATCGC	1 cut(s)	81
RruI	TCGCGA	2 cut(s)	77, 360
RsaI	GTAC	2 cut(s)	18, 137
RsaNI	GTAC	2 cut(s)	17, 136
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	92, 676
SatI	GCNGC	5 cut(s)	126, 311, 424, 562, 585
Sau3AI	GATC	2 cut(s)	78, 355
Sau96I	GGNCC	2 cut(s)	214, 622
ScrFI	CCNGG	2 cut(s)	147, 626
SduI	GDGCHC	1 cut(s)	405
SfaAI	GCGATCGC	1 cut(s)	81
SfoI	GGCGCC	2 cut(s)	199, 439
Sfr274I	CTCGAG	1 cut(s)	651
SgfI	GCGATCGC	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	2 cut(s)	214, 622
SlaI	CTCGAG	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	458, 651
SmoI	CTYRAG	2 cut(s)	458, 651
SsiI	CCGC	9 cut(s)	12, 47, 67, 125, 311, 550, 561, 584, 587
SspDI	GGCGCC	2 cut(s)	197, 437
StyD4I	CCNGG	2 cut(s)	145, 624
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	4 cut(s)	187, 494, 506, 644
TaiI	ACGT	3 cut(s)	174, 546, 600
TaqI	TCGA	5 cut(s)	87, 222, 270, 330, 652
TauI	GCSGC	4 cut(s)	128, 313, 564, 587
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	2 cut(s)	92, 676
Tru9I	TTAA	2 cut(s)	92, 676
TscAI	CASTG	2 cut(s)	509, 571
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	17, 380
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	509, 571
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	214, 622
XagI	CCTNNNNNAGG	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.