pycom17g08450

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001958
Physical Location & Seq
Forward (+)
6323838 .. 6324618
781 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08450.2

Sequence Viewer

Length: 696 bp
ATGAACCCGCCACCGCCCGTACACATCCAACTCTCCTCCCCGGGCTTGCCGCCAGCCACCACGATCACCCCAACACCTGATGGGACCCACCGCAAGGTCGCGATCGCCGTTGATTTAAGCGAGGAGAGCGCCTTCGCCGTCCGATGGGCCGTCCAGAACTACCTCCGACCCGGGGACACCGTCATCCTCCTCCACGTTCGACCCACCAGCGTGCTCTACGGCGCCGACTGGGGATCCGTTGACCCCAACGACGCCGTCTCCTCCTCTGAGTCGCAGCAGAAATTGGAGGACGACTTCGACGCCTTCACCACCACCAAGGCGGCCGACCTGGCGCAGCCGTTAGTGGAGGCGCAATTTCCGTTCAAAATCCACATAGTGAAGGACCACGACATGAAGGAGCGGCTCTGCTTGGAAGTCGAGAGGCTCCGGCTCAGCGTCGTCATCATGGGCAGCCGCGGCTTCGGCGCCGCCAAGCGAGCCTCCAAGGTCGGCAGGCTCGGCAGCGTCACTGACTACTGTGTTCACCACTGTGTTTGTCCAGTTGTGGTCGTGAGGTATCCTGATGACTCGGACGGGTTGGGCCCTGGCGGCGAACCCGATACCCCGGTGGAGCTCCACCCGGTGCCGGAGGAGGATCAGGAGGACTTCAATGAAGGCTCCTCCGACGACAACGATGATGCGCATGAAATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

232

Amino Acids

25.14

Weight (kDa)

4.71

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 681
AccB1I GGYRCC 3 cut(s) 221, 464, 622
AccBSI CCGCTC 1 cut(s) 400
AccII CGCG 2 cut(s) 101, 456
AclWI GGATC 3 cut(s) 228, 241, 642
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 4 cut(s) 222, 252, 300, 465
AdeI CACNNNGTG 2 cut(s) 376, 622
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 4 cut(s) 94, 144, 172, 625
AgsI TTSAA 2 cut(s) 364, 649
AjnI CCWGG 2 cut(s) 327, 583
AleI CACNNNNGTG 2 cut(s) 209, 528
AluBI AGCT 1 cut(s) 613
AluI AGCT 1 cut(s) 613
Alw21I GWGCWC 2 cut(s) 216, 615
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 3 cut(s) 228, 241, 642
Ama87I CYCGRG 2 cut(s) 40, 170
AoxI GGCC 3 cut(s) 147, 321, 580
ApaI GGGCCC 1 cut(s) 584
ApeKI GCWGC 4 cut(s) 274, 334, 450, 501
AsiSI GCGATCGC 1 cut(s) 105
AspLEI GCGC 6 cut(s) 131, 224, 334, 352, 467, 682
AspS9I GGNCC 5 cut(s) 84, 147, 382, 580, 581
AsuC2I CCSGG 6 cut(s) 41, 42, 171, 172, 605, 620
AsuHPI GGTGA 3 cut(s) 58, 298, 515
AvaI CYCGRG 2 cut(s) 40, 170
AvaII GGWCC 2 cut(s) 84, 382
BaeGI GKGCMC 1 cut(s) 584
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 3 cut(s) 221, 464, 622
BanII GRGCYC 2 cut(s) 584, 615
Bbv12I GWGCWC 2 cut(s) 216, 615
BbvI GCAGC 4 cut(s) 286, 346, 462, 513
BccI CCATC 2 cut(s) 74, 138
BceAI ACGGC 6 cut(s) 92, 122, 134, 235, 239, 322
BciT130I CCWGG 2 cut(s) 329, 585
BciVI GTATCC 1 cut(s) 567
BcnI CCSGG 6 cut(s) 41, 42, 171, 172, 605, 620
BcoDI GTCTC 1 cut(s) 262
BfoI RGCGCY 3 cut(s) 132, 225, 468
BfuI GTATCC 1 cut(s) 567
BglI GCCNNNNNGGC 2 cut(s) 329, 588
BlpI GCTNAGC 1 cut(s) 431
Bme1390I CCNGG 8 cut(s) 41, 42, 171, 172, 329, 585, 605, 620
Bme18I GGWCC 2 cut(s) 84, 382
BmeT110I CYCGRG 2 cut(s) 40, 170
BmgT120I GGNCC 5 cut(s) 84, 147, 382, 580, 581
BmiI GGNNCC 9 cut(s) 85, 86, 223, 235, 425, 466, 582, 624, 658
BmrFI CCNGG 8 cut(s) 41, 42, 171, 172, 329, 585, 605, 620
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 431
BpuMI CCSGG 6 cut(s) 41, 42, 171, 172, 605, 620
BsaHI GRCGYC 4 cut(s) 222, 252, 300, 465
BsaJI CCNNGG 9 cut(s) 39, 40, 170, 171, 315, 454, 483, 583, 603
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 144, 172, 625
Bse1I ACTGG 2 cut(s) 233, 539
BseBI CCWGG 2 cut(s) 329, 585
BseDI CCNNGG 9 cut(s) 39, 40, 170, 171, 315, 454, 483, 583, 603
BseGI GGATG 2 cut(s) 24, 183
BseLI CCNNNNNNNGG 4 cut(s) 94, 144, 172, 625
BseMII CTCAG 2 cut(s) 258, 445
BseNI ACTGG 2 cut(s) 233, 539
BseRI GAGGAG 7 cut(s) 25, 137, 179, 250, 253, 644, 649
BseSI GKGCMC 1 cut(s) 584
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 4 cut(s) 286, 346, 462, 513
Bsh1236I CGCG 2 cut(s) 101, 456
Bsh1285I CGRYCG 2 cut(s) 105, 324
BshFI GGCC 3 cut(s) 149, 323, 582
BshNI GGYRCC 3 cut(s) 221, 464, 622
BsiEI CGRYCG 2 cut(s) 105, 324
BsiHKAI GWGCWC 2 cut(s) 216, 615
BsiHKCI CYCGRG 2 cut(s) 40, 170
BsiSI CCGG 6 cut(s) 41, 171, 427, 605, 620, 626
BslFI GGGAC 2 cut(s) 97, 188
BslI CCNNNNNNNGG 4 cut(s) 94, 144, 172, 625
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 2 cut(s) 97, 188
BsnI GGCC 3 cut(s) 149, 323, 582
BsoBI CYCGRG 2 cut(s) 40, 170
Bsp120I GGGCCC 1 cut(s) 580
Bsp1286I GDGCHC 3 cut(s) 216, 584, 615
Bsp143I GATC 4 cut(s) 63, 102, 233, 634
Bsp1720I GCTNAGC 1 cut(s) 431
Bsp68I TCGCGA 1 cut(s) 101
BspANI GGCC 3 cut(s) 149, 323, 582
BspCNI CTCAG 2 cut(s) 259, 444
BspFNI CGCG 2 cut(s) 101, 456
BspLI GGNNCC 9 cut(s) 85, 86, 223, 235, 425, 466, 582, 624, 658
BspPI GGATC 3 cut(s) 228, 241, 642
BspT107I GGYRCC 3 cut(s) 221, 464, 622
BsrBI CCGCTC 1 cut(s) 400
BsrI ACTGG 2 cut(s) 233, 539
BssECI CCNNGG 9 cut(s) 39, 40, 170, 171, 315, 454, 483, 583, 603
BssMI GATC 4 cut(s) 63, 102, 233, 634
BssNI GRCGYC 4 cut(s) 222, 252, 300, 465
BssT1I CCWWGG 2 cut(s) 315, 483
Bst2UI CCWGG 2 cut(s) 329, 585
Bst4CI ACNGT 3 cut(s) 181, 518, 530
BstACI GRCGYC 4 cut(s) 222, 252, 300, 465
BstC8I GCNNGC 5 cut(s) 47, 54, 212, 477, 494
BstDEI CTNAG 2 cut(s) 267, 431
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 2 cut(s) 24, 183
BstFNI CGCG 2 cut(s) 101, 456
BstH2I RGCGCY 3 cut(s) 132, 225, 468
BstHHI GCGC 6 cut(s) 131, 224, 334, 352, 467, 682
BstKTI GATC 4 cut(s) 66, 105, 236, 637
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 4 cut(s) 63, 102, 233, 634
BstMCI CGRYCG 2 cut(s) 105, 324
BstMWI GCNNNNNNNGC 7 cut(s) 126, 329, 456, 462, 476, 498, 588
BstNI CCWGG 2 cut(s) 329, 585
BstSCI CCNGG 8 cut(s) 39, 40, 169, 170, 327, 583, 603, 618
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 2 cut(s) 101, 456
BstV1I GCAGC 4 cut(s) 286, 346, 462, 513
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZI CGGCCG 1 cut(s) 321
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 3 cut(s) 149, 323, 582
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 2 cut(s) 24, 183
BtsIMutI CAGTG 2 cut(s) 507, 526
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 5 cut(s) 47, 54, 212, 477, 494
CfoI GCGC 6 cut(s) 131, 224, 334, 352, 467, 682
Cfr13I GGNCC 5 cut(s) 84, 147, 382, 580, 581
Cfr42I CCGCGG 1 cut(s) 457
Cfr9I CCCGGG 2 cut(s) 40, 170
CseI GACGC 4 cut(s) 260, 308, 424, 493
Csp6I GTAC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 3 cut(s) 391, 445, 683
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 267, 431
DinI GGCGCC 2 cut(s) 223, 466
DpnI GATC 4 cut(s) 65, 104, 235, 636
DpnII GATC 4 cut(s) 63, 102, 233, 634
DraIII CACNNNGTG 2 cut(s) 376, 622
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 613
EclXI CGGCCG 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 315, 483
Eco24I GRGCYC 2 cut(s) 584, 615
Eco47I GGWCC 2 cut(s) 84, 382
Eco52I CGGCCG 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 613
Eco88I CYCGRG 2 cut(s) 40, 170
EcoICRI GAGCTC 1 cut(s) 613
EcoO109I RGGNCCY 2 cut(s) 84, 581
EcoRII CCWGG 2 cut(s) 327, 583
EcoT14I CCWWGG 2 cut(s) 315, 483
EcoT38I GRGCYC 2 cut(s) 584, 615
EgeI GGCGCC 2 cut(s) 223, 466
EheI GGCGCC 2 cut(s) 223, 466
ErhI CCWWGG 2 cut(s) 315, 483
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 3 cut(s) 394, 448, 686
FaiI YATR 4 cut(s) 374, 392, 446, 684
FaqI GGGAC 2 cut(s) 97, 188
FatI CATG 3 cut(s) 390, 444, 682
FauI CCCGC 1 cut(s) 15
FokI GGATG 2 cut(s) 11, 170
FriOI GRGCYC 2 cut(s) 584, 615
FspAI RTGCGCAY 1 cut(s) 681
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 6 cut(s) 130, 223, 333, 351, 466, 681
HaeII RGCGCY 3 cut(s) 132, 225, 468
HaeIII GGCC 3 cut(s) 149, 323, 582
HapII CCGG 6 cut(s) 41, 171, 427, 605, 620, 626
HgaI GACGC 4 cut(s) 260, 308, 424, 493
HhaI GCGC 6 cut(s) 131, 224, 334, 352, 467, 682
Hin1I GRCGYC 4 cut(s) 222, 252, 300, 465
Hin1II CATG 3 cut(s) 394, 448, 686
Hin6I GCGC 6 cut(s) 129, 222, 332, 350, 465, 680
HinP1I GCGC 6 cut(s) 129, 222, 332, 350, 465, 680
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 269, 566
HpaII CCGG 6 cut(s) 41, 171, 427, 605, 620, 626
HphI GGTGA 3 cut(s) 58, 298, 515
Hpy166II GTNNAC 3 cut(s) 22, 241, 523
Hpy188I TCNGA 5 cut(s) 143, 167, 268, 571, 664
Hpy188III TCNNGA 6 cut(s) 100, 154, 418, 550, 560, 638
Hpy8I GTNNAC 3 cut(s) 22, 241, 523
Hpy99I CGWCG 4 cut(s) 254, 302, 440, 668
HpyAV CCTTC 5 cut(s) 142, 313, 373, 388, 647
HpyCH4III ACNGT 3 cut(s) 181, 518, 530
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 329, 456, 462, 476, 498, 588
HpyF3I CTNAG 2 cut(s) 267, 431
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 4 cut(s) 222, 252, 300, 465
Hsp92II CATG 3 cut(s) 394, 448, 686
HspAI GCGC 6 cut(s) 129, 222, 332, 350, 465, 680
KasI GGCGCC 2 cut(s) 221, 464
KflI GGGWCCC 1 cut(s) 84
KspI CCGCGG 1 cut(s) 457
Kzo9I GATC 4 cut(s) 63, 102, 233, 634
LmnI GCTCC 5 cut(s) 397, 429, 610, 618, 662
Lsp1109I GCAGC 4 cut(s) 286, 346, 462, 513
LweI GCATC 1 cut(s) 667
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 505
MalI GATC 4 cut(s) 65, 104, 235, 636
MbiI CCGCTC 1 cut(s) 400
MboI GATC 4 cut(s) 63, 102, 233, 634
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 3 cut(s) 216, 584, 615
MluCI AATT 2 cut(s) 281, 353
Mly113I GGCGCC 2 cut(s) 222, 465
MlyI GAGTC 2 cut(s) 278, 560
MmeI TCCRAC 3 cut(s) 52, 190, 687
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 2 cut(s) 209, 528
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 6 cut(s) 41, 171, 427, 605, 620, 626
MspR9I CCNGG 8 cut(s) 41, 42, 171, 172, 329, 585, 605, 620
MvaI CCWGG 2 cut(s) 329, 585
MvnI CGCG 2 cut(s) 101, 456
MwoI GCNNNNNNNGC 7 cut(s) 126, 329, 456, 462, 476, 498, 588
NarI GGCGCC 2 cut(s) 222, 465
NciI CCSGG 6 cut(s) 41, 42, 171, 172, 605, 620
NdeII GATC 4 cut(s) 63, 102, 233, 634
NlaIII CATG 3 cut(s) 394, 448, 686
NlaIV GGNNCC 9 cut(s) 85, 86, 223, 235, 425, 466, 582, 624, 658
NmeAIII GCCGAG 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 505
NruI TCGCGA 1 cut(s) 101
NsbI TGCGCA 1 cut(s) 681
OliI CACNNNNGTG 2 cut(s) 209, 528
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PflFI GACNNNGTC 2 cut(s) 179, 254
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 2 cut(s) 277, 560
PluTI GGCGCC 2 cut(s) 225, 468
PpsI GAGTC 2 cut(s) 277, 560
PpuMI RGGWCCY 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 327, 583
PspGI CCWGG 2 cut(s) 327, 583
PspN4I GGNNCC 9 cut(s) 85, 86, 223, 235, 425, 466, 582, 624, 658
PspOMI GGGCCC 1 cut(s) 580
PspPI GGNCC 5 cut(s) 84, 147, 382, 580, 581
PspPPI RGGWCCY 1 cut(s) 84
PsuI RGATCY 1 cut(s) 233
PsyI GACNNNGTC 2 cut(s) 179, 254
PvuI CGATCG 1 cut(s) 105
RgaI GCGATCGC 1 cut(s) 105
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 209, 528
SacI GAGCTC 1 cut(s) 615
SacII CCGCGG 1 cut(s) 457
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 4 cut(s) 63, 102, 233, 634
Sau96I GGNCC 5 cut(s) 84, 147, 382, 580, 581
SchI GAGTC 2 cut(s) 278, 560
ScrFI CCNGG 8 cut(s) 41, 42, 171, 172, 329, 585, 605, 620
SduI GDGCHC 3 cut(s) 216, 584, 615
SetI ASST 8 cut(s) 79, 99, 165, 198, 330, 489, 557, 615
SfaAI GCGATCGC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 667
SfoI GGCGCC 2 cut(s) 223, 466
Sfr303I CCGCGG 1 cut(s) 457
SgfI GCGATCGC 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 457
SinI GGWCC 2 cut(s) 84, 382
SmaI CCCGGG 2 cut(s) 42, 172
SmiMI CAYNNNNRTG 2 cut(s) 209, 528
Sse9I AATT 2 cut(s) 281, 353
SspDI GGCGCC 2 cut(s) 221, 464
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 8 cut(s) 39, 40, 169, 170, 327, 583, 603, 618
StyI CCWWGG 2 cut(s) 315, 483
TaaI ACNGT 3 cut(s) 181, 518, 530
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 199, 297, 417
TasI AATT 2 cut(s) 281, 353
TauI GCSGC 7 cut(s) 52, 323, 403, 456, 459, 470, 591
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 514, 533
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 4 cut(s) 274, 334, 450, 501
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 3 cut(s) 17, 407, 666
TspGWI ACGGA 2 cut(s) 226, 348
TspMI CCCGGG 2 cut(s) 40, 170
TspRI CASTG 2 cut(s) 514, 533
Tth111I GACNNNGTC 2 cut(s) 179, 254
VpaK11BI GGWCC 2 cut(s) 84, 382
XmaI CCCGGG 2 cut(s) 40, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.