RchiOBHm_Chr5g0005691

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001958
Physical Location & Seq
Reverse (-)
3624194 .. 3627053
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28689

Sequence Viewer

Length: 762 bp
ATGGCTTCTCCGAAGAAGAGCCCATCATCATCATCTTCAGAACCAGAGCGTCAGCACTCCGGCTCGGCGATCGTAGTCCAACCCTCCTCCCCTCGCTTCCCTCCCAGCGGCACCCCCACCTCTGGCGCCCAGCGCCGCCTCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTCAAGTGGGCCGTCCAAAACTACCTCCGCCCCGGCGACGCCGTCGTCCTCCTTCACGTCCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCATCCCCAACGACGAGGCCTCCCAGCGGAAACTCGAGTCCGATTTCGACAACTTCACCCTCACCAAAGCCACCGACGTCTCCAAGCCTCTCGAGGAGGCTCGGATCCCCTACAAGATCCACATAGTGAAGGACCACGATATGAAGGAGCGTCTCTGCTTGGAGGTCGAGCGGCTCGGCCTGGTCGCCGTCATTATGGGCAGCCGGGGGTTCGGAGCCACCAAGCGGAGCTCCAACGCCAGGCTCGGTAGTGTTAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATCGTCGTTAGGTTTTCCGATGACAAGGACGGAGATGGAGACGGAGTCGACGTCGTAAAACCCGCGAGGTTTGACTCTCTTCACGAGGAAGAGCCGGAGTTCCACGACGCTTTGGATAAAGGTCAGCATTATACTTGCTGTTCGTCTTCCGATACTTGGTTTGTTAGTATGCATAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

253

Amino Acids

27.66

Weight (kDa)

5.67

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 45 - 197 1.6e-23 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AatII GACGTC 3 cut(s) 288, 369, 633
AccB1I GGYRCC 4 cut(s) 110, 125, 263, 275
AccBSI CCGCTC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 644
AciI CCGC 8 cut(s) 108, 136, 208, 241, 316, 460, 514, 642
AclWI GGATC 4 cut(s) 152, 388, 400, 401
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 7 cut(s) 126, 219, 264, 276, 285, 366, 630
AdeI CACNNNGTG 1 cut(s) 415
AfiI CCNNNNNNNGG 7 cut(s) 107, 122, 186, 315, 513, 528, 735
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 468, 527
AluBI AGCT 1 cut(s) 519
AluI AGCT 1 cut(s) 519
Alw21I GWGCWC 2 cut(s) 521, 561
Alw26I GTCTC 4 cut(s) 292, 373, 446, 612
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 4 cut(s) 152, 388, 400, 401
Ama87I CYCGRG 3 cut(s) 140, 323, 380
AoxI GGCC 3 cut(s) 189, 306, 466
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 489
AspLEI GCGC 5 cut(s) 128, 135, 173, 266, 278
AspS9I GGNCC 2 cut(s) 189, 421
AsuC2I CCSGG 2 cut(s) 213, 494
AsuHPI GGTGA 2 cut(s) 337, 343
AvaI CYCGRG 3 cut(s) 140, 323, 380
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 561
BamHI GGATCC 1 cut(s) 393
BanI GGYRCC 4 cut(s) 110, 125, 263, 275
BanII GRGCYC 2 cut(s) 23, 521
BauI CACGAG 1 cut(s) 662
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 2 cut(s) 521, 561
BbvI GCAGC 1 cut(s) 501
BccI CCATC 3 cut(s) 31, 299, 608
BceAI ACGGC 6 cut(s) 134, 164, 176, 206, 277, 461
BciT130I CCWGG 2 cut(s) 470, 529
BcnI CCSGG 2 cut(s) 213, 494
BcoDI GTCTC 4 cut(s) 292, 373, 446, 612
BfoI RGCGCY 5 cut(s) 129, 136, 174, 267, 279
BisI GCNGC 4 cut(s) 109, 136, 461, 490
BlsI GCNGC 4 cut(s) 110, 137, 462, 491
Bme1390I CCNGG 4 cut(s) 213, 470, 494, 529
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 3 cut(s) 140, 323, 380
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 189, 421
BmiI GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
BmrFI CCNGG 4 cut(s) 213, 470, 494, 529
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 717
BpuMI CCSGG 2 cut(s) 213, 494
BsaHI GRCGYC 7 cut(s) 126, 219, 264, 276, 285, 366, 630
BsaJI CCNNGG 3 cut(s) 139, 211, 493
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 6 cut(s) 293, 323, 609, 615, 639, 645
Bsc4I CCNNNNNNNGG 7 cut(s) 107, 122, 186, 315, 513, 528, 735
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 470, 529
BseDI CCNNGG 3 cut(s) 139, 211, 493
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 7 cut(s) 107, 122, 186, 315, 513, 528, 735
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 76, 398
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 1 cut(s) 501
BseYI CCCAGC 3 cut(s) 104, 129, 312
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 191, 308, 468
BshNI GGYRCC 4 cut(s) 110, 125, 263, 275
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 521, 561
BsiHKCI CYCGRG 3 cut(s) 140, 323, 380
BsiSI CCGG 5 cut(s) 60, 213, 493, 575, 674
BslI CCNNNNNNNGG 7 cut(s) 107, 122, 186, 315, 513, 528, 735
BsmAI GTCTC 4 cut(s) 292, 373, 446, 612
BsmBI CGTCTC 4 cut(s) 292, 373, 446, 612
BsnI GGCC 3 cut(s) 191, 308, 468
BsoBI CYCGRG 3 cut(s) 140, 323, 380
Bsp1286I GDGCHC 3 cut(s) 23, 521, 561
Bsp143I GATC 5 cut(s) 69, 144, 154, 393, 405
BspACI CCGC 8 cut(s) 108, 136, 208, 241, 316, 460, 514, 642
BspANI GGCC 3 cut(s) 191, 308, 468
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
BspPI GGATC 4 cut(s) 152, 388, 400, 401
BspQI GCTCTTC 2 cut(s) 11, 663
BspT107I GGYRCC 4 cut(s) 110, 125, 263, 275
BsrBI CCGCTC 1 cut(s) 460
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 139, 211, 493
BssMI GATC 5 cut(s) 69, 144, 154, 393, 405
BssNI GRCGYC 7 cut(s) 126, 219, 264, 276, 285, 366, 630
BssSI CACGAG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 470, 529
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 3 cut(s) 11, 663, 663
BstACI GRCGYC 7 cut(s) 126, 219, 264, 276, 285, 366, 630
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 644
BstH2I RGCGCY 5 cut(s) 129, 136, 174, 267, 279
BstHHI GCGC 5 cut(s) 128, 135, 173, 266, 278
BstKTI GATC 5 cut(s) 72, 147, 157, 396, 408
BstMAI GTCTC 4 cut(s) 292, 373, 446, 612
BstMBI GATC 5 cut(s) 69, 144, 154, 393, 405
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 132, 168, 249
BstNI CCWGG 2 cut(s) 470, 529
BstSCI CCNGG 4 cut(s) 211, 468, 492, 527
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 2 cut(s) 393, 405
BstYI RGATCY 2 cut(s) 393, 405
BsuRI GGCC 3 cut(s) 191, 308, 468
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
CfoI GCGC 5 cut(s) 128, 135, 173, 266, 278
Cfr13I GGNCC 2 cut(s) 189, 421
CseI GACGC 6 cut(s) 38, 227, 241, 428, 556, 695
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 3 cut(s) 127, 265, 277
DpnI GATC 5 cut(s) 71, 146, 156, 395, 407
DpnII GATC 5 cut(s) 69, 144, 154, 393, 405
DraIII CACNNNGTG 1 cut(s) 415
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 3 cut(s) 11, 663, 663
EarI CTCTTC 3 cut(s) 11, 663, 663
EciI GGCGGA 2 cut(s) 197, 230
Ecl136II GAGCTC 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 2 cut(s) 23, 521
Eco47I GGWCC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 1 cut(s) 21
Eco88I CYCGRG 3 cut(s) 140, 323, 380
EcoICRI GAGCTC 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 468, 527
EcoT22I ATGCAT 1 cut(s) 753
EcoT38I GRGCYC 2 cut(s) 23, 521
EgeI GGCGCC 3 cut(s) 127, 265, 277
EheI GGCGCC 3 cut(s) 127, 265, 277
Esp3I CGTCTC 4 cut(s) 292, 373, 446, 612
FaiI YATR 6 cut(s) 413, 431, 485, 711, 749, 753
FauI CCCGC 1 cut(s) 649
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 4 cut(s) 109, 136, 461, 490
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 2 cut(s) 23, 521
Fsp4HI GCNGC 4 cut(s) 109, 136, 461, 490
GlaI GCGC 5 cut(s) 127, 134, 172, 265, 277
GluI GCNGC 4 cut(s) 109, 136, 461, 490
GsaI CCCAGC 3 cut(s) 108, 133, 316
HaeII RGCGCY 5 cut(s) 129, 136, 174, 267, 279
HaeIII GGCC 3 cut(s) 191, 308, 468
HapII CCGG 5 cut(s) 60, 213, 493, 575, 674
HgaI GACGC 6 cut(s) 38, 227, 241, 428, 556, 695
HhaI GCGC 5 cut(s) 128, 135, 173, 266, 278
Hin1I GRCGYC 7 cut(s) 126, 219, 264, 276, 285, 366, 630
Hin6I GCGC 5 cut(s) 126, 133, 171, 264, 276
HinP1I GCGC 5 cut(s) 126, 133, 171, 264, 276
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 3 cut(s) 326, 624, 653
HpaII CCGG 5 cut(s) 60, 213, 493, 575, 674
HphI GGTGA 2 cut(s) 337, 343
Hpy166II GTNNAC 2 cut(s) 559, 628
Hpy188I TCNGA 7 cut(s) 12, 40, 331, 393, 503, 598, 730
Hpy188III TCNNGA 3 cut(s) 142, 380, 662
Hpy8I GTNNAC 2 cut(s) 559, 628
HpyAV CCTTC 4 cut(s) 184, 242, 412, 427
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 4 cut(s) 237, 285, 366, 630
HpyCH4V TGCA 2 cut(s) 559, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 168, 249
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 4 cut(s) 237, 285, 366, 630
Hsp92I GRCGYC 7 cut(s) 126, 219, 264, 276, 285, 366, 630
HspAI GCGC 5 cut(s) 126, 133, 171, 264, 276
KasI GGCGCC 3 cut(s) 125, 263, 275
Kzo9I GATC 5 cut(s) 69, 144, 154, 393, 405
LguI GCTCTTC 2 cut(s) 11, 663
LmnI GCTCC 4 cut(s) 436, 503, 516, 524
Lsp1109I GCAGC 1 cut(s) 501
MaeII ACGT 4 cut(s) 237, 285, 366, 630
MaeIII GTNAC 1 cut(s) 545
MalI GATC 5 cut(s) 71, 146, 156, 395, 407
MbiI CCGCTC 1 cut(s) 460
MboI GATC 5 cut(s) 69, 144, 154, 393, 405
MboII GAAGA 6 cut(s) 25, 27, 28, 650, 680, 717
MflI RGATCY 2 cut(s) 393, 405
MhlI GDGCHC 3 cut(s) 23, 521, 561
Mly113I GGCGCC 3 cut(s) 126, 264, 276
MlyI GAGTC 3 cut(s) 335, 633, 647
MmeI TCCRAC 2 cut(s) 103, 546
Mph1103I ATGCAT 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 108, 316
MspI CCGG 5 cut(s) 60, 213, 493, 575, 674
MspR9I CCNGG 4 cut(s) 213, 470, 494, 529
MvaI CCWGG 2 cut(s) 470, 529
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 3 cut(s) 132, 168, 249
NarI GGCGCC 3 cut(s) 126, 264, 276
NciI CCSGG 2 cut(s) 213, 494
NdeII GATC 5 cut(s) 69, 144, 154, 393, 405
NlaIV GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
NmeAIII GCCGAG 2 cut(s) 44, 444
NmuCI GTSAC 1 cut(s) 545
NsiI ATGCAT 1 cut(s) 753
PaeR7I CTCGAG 2 cut(s) 323, 380
PceI AGGCCT 1 cut(s) 308
PciSI GCTCTTC 2 cut(s) 11, 663
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 159, 627
PflFI GACNNNGTC 2 cut(s) 221, 623
PkrI GCNGC 4 cut(s) 110, 137, 462, 491
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 3 cut(s) 334, 632, 647
PluTI GGCGCC 3 cut(s) 129, 267, 279
PpsI GAGTC 3 cut(s) 334, 632, 647
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 468, 527
PspFI CCCAGC 3 cut(s) 104, 129, 312
PspGI CCWGG 2 cut(s) 468, 527
PspN4I GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
PspPI GGNCC 2 cut(s) 189, 421
PspXI VCTCGAGB 1 cut(s) 323
PsuI RGATCY 2 cut(s) 393, 405
PsyI GACNNNGTC 2 cut(s) 221, 623
PvuI CGATCG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 521
SalI GTCGAC 1 cut(s) 626
SapI GCTCTTC 2 cut(s) 11, 663
SatI GCNGC 4 cut(s) 109, 136, 461, 490
Sau3AI GATC 5 cut(s) 69, 144, 154, 393, 405
Sau96I GGNCC 2 cut(s) 189, 421
SchI GAGTC 3 cut(s) 335, 633, 647
ScrFI CCNGG 4 cut(s) 213, 470, 494, 529
SduI GDGCHC 3 cut(s) 23, 521, 561
SfoI GGCGCC 3 cut(s) 127, 265, 277
Sfr274I CTCGAG 2 cut(s) 323, 380
SinI GGWCC 1 cut(s) 421
SlaI CTCGAG 2 cut(s) 323, 380
SmlI CTYRAG 2 cut(s) 323, 380
SmoI CTYRAG 2 cut(s) 323, 380
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 8 cut(s) 108, 136, 208, 241, 316, 460, 514, 642
SspDI GGCGCC 3 cut(s) 125, 263, 275
SstI GAGCTC 1 cut(s) 521
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 211, 468, 492, 527
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 4 cut(s) 240, 288, 369, 633
TaqI TCGA 6 cut(s) 153, 324, 336, 381, 456, 627
TauI GCSGC 3 cut(s) 111, 138, 463
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 2 cut(s) 624, 636
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 2 cut(s) 221, 623
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 421
XhoI CTCGAG 2 cut(s) 323, 380
XmiI GTMKAC 1 cut(s) 627
ZraI GACGTC 3 cut(s) 286, 367, 631
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.