RLG00000031318

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001958
Physical Location & Seq
Reverse (-)
4062191 .. 4065243
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031318

Sequence Viewer

Length: 720 bp
ATGGCTTCTCCAAAGAAGAGCCCATCATCATCATCTTCAGAACCAGAGCGTCAGCACTCCGGCTCGGCGATCGTAGTCCAACCCTCCTCCCCTCGCTTCCCTCCCAGCGGCACCCCCACCTCTGGCGCCCAGCGCCGCATCGGGATCGCCGTCGATCTGAGCGACGAGAGCGCCTTCGCCGTCAAGTGGGCCGTCCAAAACTACCTCCGCCCCGGGGACGCCGTCGTCCTCCTCCACGTCCGCCCCACCAGCGTCCTCTACGGCGCCGACTGGGGCGCCACCGACGTCTCCGTCCCCGATGACGAGGCCTCCCAGCAGAAACTCGAGTCCGATTTCGACAACTTCACCCTCACCAAAGCCACCGACCTCTCCAAGCCTCTCGAGGAGGCTCGGATCCCCTACAAGATCCACATAGTGAAGGACCACGATATGAAGGAGCGTCTATGCTTGGAGGTCGAGCGGCTCGGCCTGGTCGCCGTCATTATGGGCAGCCGGGGGTTCGGAGCCACCAAGCGGAGCTCCAACGCCAGGCTCGGTAGTGTTAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATCGTCGTTAGGTTTTCCGATGACAAGGACGGAGATGGAGACGGAGACGACGTCGTAAAGCCGGCGAGGTTTGACTCTGTTCACGAGGAAGAGCCGGAGTTCCATGACGCTTTGGATAAAGATACGGATAAGGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

240

Amino Acids

26.09

Weight (kDa)

5.27

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 45 - 197 6.5e-25 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 224, 290
AatII GACGTC 2 cut(s) 288, 633
AccB1I GGYRCC 4 cut(s) 110, 125, 263, 275
AccBSI CCGCTC 1 cut(s) 460
AciI CCGC 6 cut(s) 108, 136, 208, 241, 460, 514
AclWI GGATC 4 cut(s) 152, 388, 400, 401
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
AdeI CACNNNGTG 1 cut(s) 415
AfiI CCNNNNNNNGG 6 cut(s) 107, 122, 186, 214, 513, 528
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 468, 527
AluBI AGCT 1 cut(s) 519
AluI AGCT 1 cut(s) 519
Alw21I GWGCWC 2 cut(s) 521, 561
Alw26I GTCTC 3 cut(s) 292, 612, 618
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 4 cut(s) 152, 388, 400, 401
Ama87I CYCGRG 3 cut(s) 212, 323, 380
AoxI GGCC 3 cut(s) 189, 306, 466
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 489
AspLEI GCGC 5 cut(s) 128, 135, 173, 266, 278
AspS9I GGNCC 2 cut(s) 189, 421
AsuC2I CCSGG 3 cut(s) 213, 214, 494
AsuHPI GGTGA 2 cut(s) 337, 343
AvaI CYCGRG 3 cut(s) 212, 323, 380
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 561
BamHI GGATCC 1 cut(s) 393
BanI GGYRCC 4 cut(s) 110, 125, 263, 275
BanII GRGCYC 2 cut(s) 23, 521
BauI CACGAG 1 cut(s) 662
Bbv12I GWGCWC 2 cut(s) 521, 561
BbvI GCAGC 1 cut(s) 501
BccI CCATC 2 cut(s) 31, 608
BceAI ACGGC 6 cut(s) 134, 164, 176, 206, 277, 461
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 470, 529
BcnI CCSGG 3 cut(s) 213, 214, 494
BcoDI GTCTC 3 cut(s) 292, 612, 618
BfoI RGCGCY 5 cut(s) 129, 136, 174, 267, 279
BisI GCNGC 4 cut(s) 109, 136, 461, 490
BlsI GCNGC 4 cut(s) 110, 137, 462, 491
Bme1390I CCNGG 5 cut(s) 213, 214, 470, 494, 529
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 3 cut(s) 212, 323, 380
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 189, 421
BmiI GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
BmrFI CCNGG 5 cut(s) 213, 214, 470, 494, 529
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 280
BpuMI CCSGG 3 cut(s) 213, 214, 494
BsaHI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
BsaJI CCNNGG 4 cut(s) 211, 212, 213, 493
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 615, 645
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 122, 186, 214, 513, 528
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 470, 529
BseDI CCNNGG 4 cut(s) 211, 212, 213, 493
BseLI CCNNNNNNNGG 6 cut(s) 107, 122, 186, 214, 513, 528
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 3 cut(s) 76, 221, 398
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 1 cut(s) 501
BseYI CCCAGC 3 cut(s) 104, 129, 312
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 191, 308, 468
BshNI GGYRCC 4 cut(s) 110, 125, 263, 275
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 521, 561
BsiHKCI CYCGRG 3 cut(s) 212, 323, 380
BsiSI CCGG 6 cut(s) 60, 213, 493, 575, 641, 674
BslFI GGGAC 2 cut(s) 230, 278
BslI CCNNNNNNNGG 6 cut(s) 107, 122, 186, 214, 513, 528
BsmAI GTCTC 3 cut(s) 292, 612, 618
BsmBI CGTCTC 3 cut(s) 292, 612, 618
BsmFI GGGAC 2 cut(s) 230, 278
BsnI GGCC 3 cut(s) 191, 308, 468
BsoBI CYCGRG 3 cut(s) 212, 323, 380
Bsp1286I GDGCHC 3 cut(s) 23, 521, 561
Bsp143I GATC 5 cut(s) 69, 144, 154, 393, 405
BspACI CCGC 6 cut(s) 108, 136, 208, 241, 460, 514
BspANI GGCC 3 cut(s) 191, 308, 468
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
BspPI GGATC 4 cut(s) 152, 388, 400, 401
BspQI GCTCTTC 2 cut(s) 11, 663
BspT107I GGYRCC 4 cut(s) 110, 125, 263, 275
BsrBI CCGCTC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 4 cut(s) 211, 212, 213, 493
BssMI GATC 5 cut(s) 69, 144, 154, 393, 405
BssNI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
BssSI CACGAG 1 cut(s) 662
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 470, 529
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 2 cut(s) 11, 663
BstACI GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 1 cut(s) 158
BstH2I RGCGCY 5 cut(s) 129, 136, 174, 267, 279
BstHHI GCGC 5 cut(s) 128, 135, 173, 266, 278
BstKTI GATC 5 cut(s) 72, 147, 157, 396, 408
BstMAI GTCTC 3 cut(s) 292, 612, 618
BstMBI GATC 5 cut(s) 69, 144, 154, 393, 405
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 132, 168, 249
BstNI CCWGG 2 cut(s) 470, 529
BstSCI CCNGG 5 cut(s) 211, 212, 468, 492, 527
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 1 cut(s) 501
BstX2I RGATCY 2 cut(s) 393, 405
BstYI RGATCY 2 cut(s) 393, 405
BsuRI GGCC 3 cut(s) 191, 308, 468
BtrI CACGTC 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 642
CfoI GCGC 5 cut(s) 128, 135, 173, 266, 278
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 189, 421
Cfr9I CCCGGG 1 cut(s) 212
CseI GACGC 6 cut(s) 38, 227, 241, 428, 556, 695
CviAII CATG 1 cut(s) 683
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 3 cut(s) 127, 265, 277
DpnI GATC 5 cut(s) 71, 146, 156, 395, 407
DpnII GATC 5 cut(s) 69, 144, 154, 393, 405
DraIII CACNNNGTG 1 cut(s) 415
DrdI GACNNNNNNGTC 2 cut(s) 224, 290
DseDI GACNNNNNNGTC 2 cut(s) 224, 290
Eam1104I CTCTTC 2 cut(s) 11, 663
EarI CTCTTC 2 cut(s) 11, 663
EciI GGCGGA 2 cut(s) 197, 230
Ecl136II GAGCTC 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 2 cut(s) 23, 521
Eco47I GGWCC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 1 cut(s) 21
Eco88I CYCGRG 3 cut(s) 212, 323, 380
EcoICRI GAGCTC 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 468, 527
EcoT38I GRGCYC 2 cut(s) 23, 521
EgeI GGCGCC 3 cut(s) 127, 265, 277
EheI GGCGCC 3 cut(s) 127, 265, 277
Esp3I CGTCTC 3 cut(s) 292, 612, 618
FaeI CATG 1 cut(s) 686
FaiI YATR 5 cut(s) 413, 431, 445, 485, 684
FaqI GGGAC 2 cut(s) 230, 278
FatI CATG 1 cut(s) 682
Fnu4HI GCNGC 4 cut(s) 109, 136, 461, 490
FriOI GRGCYC 2 cut(s) 23, 521
Fsp4HI GCNGC 4 cut(s) 109, 136, 461, 490
GlaI GCGC 5 cut(s) 127, 134, 172, 265, 277
GluI GCNGC 4 cut(s) 109, 136, 461, 490
GsaI CCCAGC 3 cut(s) 108, 133, 316
HaeII RGCGCY 5 cut(s) 129, 136, 174, 267, 279
HaeIII GGCC 3 cut(s) 191, 308, 468
HapII CCGG 6 cut(s) 60, 213, 493, 575, 641, 674
HgaI GACGC 6 cut(s) 38, 227, 241, 428, 556, 695
HhaI GCGC 5 cut(s) 128, 135, 173, 266, 278
Hin1I GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
Hin1II CATG 1 cut(s) 686
Hin6I GCGC 5 cut(s) 126, 133, 171, 264, 276
HinP1I GCGC 5 cut(s) 126, 133, 171, 264, 276
HinfI GANTC 2 cut(s) 326, 653
HpaII CCGG 6 cut(s) 60, 213, 493, 575, 641, 674
HphI GGTGA 2 cut(s) 337, 343
Hpy166II GTNNAC 2 cut(s) 559, 661
Hpy188I TCNGA 6 cut(s) 40, 159, 331, 393, 503, 598
Hpy188III TCNNGA 3 cut(s) 142, 380, 662
Hpy8I GTNNAC 2 cut(s) 559, 661
Hpy99I CGWCG 7 cut(s) 155, 167, 227, 287, 587, 632, 635
HpyAV CCTTC 3 cut(s) 184, 412, 427
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 3 cut(s) 237, 285, 630
HpyCH4V TGCA 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 168, 249
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 3 cut(s) 237, 285, 630
Hsp92I GRCGYC 6 cut(s) 126, 219, 264, 276, 285, 630
Hsp92II CATG 1 cut(s) 686
HspAI GCGC 5 cut(s) 126, 133, 171, 264, 276
KasI GGCGCC 3 cut(s) 125, 263, 275
KroI GCCGGC 1 cut(s) 640
KroNI GCCGGC 1 cut(s) 642
Kzo9I GATC 5 cut(s) 69, 144, 154, 393, 405
LguI GCTCTTC 2 cut(s) 11, 663
LmnI GCTCC 4 cut(s) 436, 503, 516, 524
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 1 cut(s) 147
MaeII ACGT 3 cut(s) 237, 285, 630
MaeIII GTNAC 1 cut(s) 545
MalI GATC 5 cut(s) 71, 146, 156, 395, 407
MbiI CCGCTC 1 cut(s) 460
MboI GATC 5 cut(s) 69, 144, 154, 393, 405
MboII GAAGA 3 cut(s) 27, 28, 680
MflI RGATCY 2 cut(s) 393, 405
MhlI GDGCHC 3 cut(s) 23, 521, 561
Mly113I GGCGCC 3 cut(s) 126, 264, 276
MlyI GAGTC 2 cut(s) 335, 647
MmeI TCCRAC 2 cut(s) 103, 546
MroNI GCCGGC 1 cut(s) 640
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 6 cut(s) 60, 213, 493, 575, 641, 674
MspR9I CCNGG 5 cut(s) 213, 214, 470, 494, 529
MvaI CCWGG 2 cut(s) 470, 529
MwoI GCNNNNNNNGC 3 cut(s) 132, 168, 249
NaeI GCCGGC 1 cut(s) 642
NarI GGCGCC 3 cut(s) 126, 264, 276
NciI CCSGG 3 cut(s) 213, 214, 494
NdeII GATC 5 cut(s) 69, 144, 154, 393, 405
NgoMIV GCCGGC 1 cut(s) 640
NlaIII CATG 1 cut(s) 686
NlaIV GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
NmeAIII GCCGAG 2 cut(s) 44, 444
NmuCI GTSAC 1 cut(s) 545
PaeR7I CTCGAG 2 cut(s) 323, 380
PceI AGGCCT 1 cut(s) 308
PciSI GCTCTTC 2 cut(s) 11, 663
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 159, 627
PdiI GCCGGC 1 cut(s) 642
PflFI GACNNNGTC 2 cut(s) 221, 629
PkrI GCNGC 4 cut(s) 110, 137, 462, 491
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 2 cut(s) 334, 647
PluTI GGCGCC 3 cut(s) 129, 267, 279
PpsI GAGTC 2 cut(s) 334, 647
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 468, 527
PspFI CCCAGC 3 cut(s) 104, 129, 312
PspGI CCWGG 2 cut(s) 468, 527
PspN4I GGNNCC 6 cut(s) 112, 127, 265, 277, 395, 505
PspPI GGNCC 2 cut(s) 189, 421
PspXI VCTCGAGB 1 cut(s) 323
PsuI RGATCY 2 cut(s) 393, 405
PsyI GACNNNGTC 2 cut(s) 221, 629
PvuI CGATCG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 521
SapI GCTCTTC 2 cut(s) 11, 663
SatI GCNGC 4 cut(s) 109, 136, 461, 490
Sau3AI GATC 5 cut(s) 69, 144, 154, 393, 405
Sau96I GGNCC 2 cut(s) 189, 421
SchI GAGTC 2 cut(s) 335, 647
ScrFI CCNGG 5 cut(s) 213, 214, 470, 494, 529
SduI GDGCHC 3 cut(s) 23, 521, 561
SfaNI GCATC 1 cut(s) 147
SfoI GGCGCC 3 cut(s) 127, 265, 277
Sfr274I CTCGAG 2 cut(s) 323, 380
SinI GGWCC 1 cut(s) 421
SlaI CTCGAG 2 cut(s) 323, 380
SmaI CCCGGG 1 cut(s) 214
SmlI CTYRAG 2 cut(s) 323, 380
SmoI CTYRAG 2 cut(s) 323, 380
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 6 cut(s) 108, 136, 208, 241, 460, 514
SspDI GGCGCC 3 cut(s) 125, 263, 275
SstI GAGCTC 1 cut(s) 521
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 5 cut(s) 211, 212, 468, 492, 527
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 3 cut(s) 240, 288, 633
TaqI TCGA 5 cut(s) 153, 324, 336, 381, 456
TauI GCSGC 3 cut(s) 111, 138, 463
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 4 cut(s) 280, 624, 636, 719
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 2 cut(s) 221, 629
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 421
XhoI CTCGAG 2 cut(s) 323, 380
XmaI CCCGGG 1 cut(s) 212
ZraI GACGTC 2 cut(s) 286, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.