Rh5CG217700

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001958
Physical Location & Seq
Forward (+)
22131431 .. 22131912
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG217700.1

Sequence Viewer

Length: 303 bp
ATGCTCATGGGCAGCCGGGAGTTCGGAGCCACCAAGCGGAGCTCGAACGCCAGGCTCGGCAGTGTCAGTGACTACTGTGTGCACCACTGCGTCTGTCCGGTCATAGTCATTAGGTTTTCCGATGACAAGAAGGAGATGGAGACGGAGACGATGTTGTACAGTCGGCGAGTATTTGACTCTGTTAATGTGGTCGCGGGCGCCGGGACATTGATCCACTACGAGTTCAACAGCCTCAACTCGCCGCTCTACCCGAGGACCCGAGGATTCGATTCCGGCTCCTCCAAAATCCGATTCCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

100

Amino Acids

11.31

Weight (kDa)

8.93

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 3 - 38 4.9e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 244
AccII CGCG 1 cut(s) 194
AciI CCGC 3 cut(s) 37, 194, 242
AclWI GGATC 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 50
AjuI GAANNNNNNNTTGG 1 cut(s) 275
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw21I GWGCWC 2 cut(s) 44, 84
Alw26I GTCTC 2 cut(s) 134, 140
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 2 cut(s) 250, 258
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 2 cut(s) 17, 202
AvaI CYCGRG 2 cut(s) 250, 258
AvaII GGWCC 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 2 cut(s) 44, 84
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 52
BcnI CCSGG 2 cut(s) 17, 202
BcoDI GTCTC 2 cut(s) 134, 140
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 2 cut(s) 13, 242
BlsI GCNGC 2 cut(s) 14, 243
Bme1390I CCNGG 3 cut(s) 17, 52, 202
Bme18I GGWCC 1 cut(s) 255
BmeT110I CYCGRG 2 cut(s) 250, 258
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 4 cut(s) 28, 199, 257, 277
BmrFI CCNGG 3 cut(s) 17, 52, 202
BpuMI CCSGG 2 cut(s) 17, 202
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 251, 259
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 251, 259
BseLI CCNNNNNNNGG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 44, 84
BsiHKCI CYCGRG 2 cut(s) 250, 258
BsiSI CCGG 4 cut(s) 16, 98, 201, 273
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 134, 140
BsmBI CGTCTC 2 cut(s) 134, 140
BsmFI GGGAC 1 cut(s) 217
BsoBI CYCGRG 2 cut(s) 250, 258
Bsp1286I GDGCHC 2 cut(s) 44, 84
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 3 cut(s) 37, 194, 242
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 4 cut(s) 28, 199, 257, 277
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 251, 259
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 77, 161
BstACI GRCGYC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 196
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 2 cut(s) 134, 140
BstMBI GATC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 15, 50, 200
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 24
BtsI GCAGTG 2 cut(s) 67, 85
BtsIMutI CAGTG 3 cut(s) 67, 73, 85
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 15, 29, 42, 55, 231, 276
CviKI_1 RGCY 6 cut(s) 15, 29, 42, 55, 231, 276
CviQI GTAC 1 cut(s) 157
DinI GGCGCC 1 cut(s) 199
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 42
Eco88I CYCGRG 2 cut(s) 250, 258
EcoICRI GAGCTC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
Esp3I CGTCTC 2 cut(s) 134, 140
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 104
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 13, 242
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 13, 242
GlaI GCGC 1 cut(s) 199
GluI GCNGC 2 cut(s) 13, 242
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 4 cut(s) 16, 98, 201, 273
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 4 cut(s) 176, 264, 269, 291
HpaII CCGG 4 cut(s) 16, 98, 201, 273
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 26, 121, 290, 302
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 77, 161
HpyCH4V TGCA 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 198
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 26, 39, 281
LpnPI CCDG 6 cut(s) 29, 37, 64, 111, 214, 286
Lsp1109I GCAGC 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 244
MboI GATC 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 44, 84
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 242, 246, 254, 289
MseI TTAA 1 cut(s) 183
MspI CCGG 4 cut(s) 16, 98, 201, 273
MspR9I CCNGG 3 cut(s) 17, 52, 202
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 194
NarI GGCGCC 1 cut(s) 198
NciI CCSGG 2 cut(s) 17, 202
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 4 cut(s) 28, 199, 257, 277
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 264, 269, 291
PkrI GCNGC 2 cut(s) 14, 243
PleI GAGTC 1 cut(s) 170
PluTI GGCGCC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 28, 199, 257, 277
PspPI GGNCC 1 cut(s) 255
PspPPI RGGWCCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 13, 242
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 17, 52, 202
SduI GDGCHC 2 cut(s) 44, 84
SetI ASST 2 cut(s) 44, 116
SfoI GGCGCC 1 cut(s) 199
SinI GGWCC 1 cut(s) 255
SsiI CCGC 3 cut(s) 37, 194, 242
SspDI GGCGCC 1 cut(s) 197
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 15, 50, 200
TaaI ACNGT 2 cut(s) 77, 161
TaqI TCGA 2 cut(s) 44, 267
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 3 cut(s) 264, 269, 291
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 3 cut(s) 67, 73, 92
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 3 cut(s) 67, 73, 92
VneI GTGCAC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.