Prupe.4G033700_v2.0.a1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001958
Physical Location & Seq
Reverse (-)
1566782 .. 1569771
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G033700.1

Sequence Viewer

Length: 702 bp
ATGGCTTCTCCGAGTAAGAGCCCACTTAAAGAACCAGGAGATCGTCAGTCAGCGGCAATCGTAGTCCAACCGTCGTCCCCGCGTTACCCTCCGAGTGGGACCCCCACCTCTGGGGCCCAGCGCCGAATCGGGATCGCCGTCGATCTCAGCGACGAGAGCGCCTTCGCCGTCAAATGGGCCGTCCAGAATTACCTCCGCCCCGGCGATGCCGTCATCCTCCTCCACGTCCGCCCCACCAGCGTCCTCTACGGCGCTGACTGGGGCGCCACCGATGTCTCCATCCCTGAAGACCAAGAGTCTCAGCAGAAGCTCGAGGACGATTTCGACAATTTCACCGTCACCAAGGCCAACGACCTCGCCAAGCCTCTGGAAGAGGCTAAGACTCCGTACAAGATCCACATAGTGAAGGACCACGACATGAAGGAGAGGTTGTGCTTGGAGGTCGAGAGGCTCGGCCTCAGCGCCGTCGTTATGGGCAGCCGGGGCTTCGGCGCTTCGAAGACGACCTCCAAGGCCAGGCTCGGCAGTGTCAGTGACTACTGTGTGCATCACTGCGTCTGTCCTGTCATCGTCGTAAGGTTCTCCGATGAAAAGGACGAAAACGACGTCGCAAAGCAAGGTAAATTTGGCTGTCCGGTCGTGCGTGAGGAAGAGCCGGAGTTCCATGATGCTTTGGAGAAAGATTCAGACAAGGCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

234

Amino Acids

25.55

Weight (kDa)

5.44

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 609
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 82
AciI CCGC 4 cut(s) 53, 80, 196, 229
AclWI GGATC 2 cut(s) 140, 388
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 2 cut(s) 264, 606
AdeI CACNNNGTG 1 cut(s) 403
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 5 cut(s) 95, 110, 111, 174, 516
AhdI GACNNNNNGTC 1 cut(s) 295
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 34, 515
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 280, 303
AlwI GGATC 2 cut(s) 140, 388
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 5 cut(s) 114, 177, 345, 454, 513
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 1 cut(s) 623
ArsI GACNNNNNNTTYG 4 cut(s) 165, 197, 591, 623
AspLEI GCGC 6 cut(s) 123, 161, 254, 266, 464, 494
AspS9I GGNCC 5 cut(s) 99, 114, 115, 177, 409
AsuC2I CCSGG 2 cut(s) 201, 482
AsuHPI GGTGA 2 cut(s) 325, 331
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 99, 409
BaeGI GKGCMC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 23, 118
BbsI GAAGAC 2 cut(s) 294, 506
BbvCI CCTCAGC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 287
BceAI ACGGC 6 cut(s) 122, 152, 164, 194, 265, 449
BciT130I CCWGG 2 cut(s) 36, 517
BcnI CCSGG 2 cut(s) 201, 482
BcoDI GTCTC 2 cut(s) 280, 303
BfoI RGCGCY 6 cut(s) 124, 162, 255, 267, 465, 495
BisI GCNGC 2 cut(s) 54, 478
BlsI GCNGC 2 cut(s) 55, 479
Bme1390I CCNGG 4 cut(s) 36, 201, 482, 517
Bme18I GGWCC 2 cut(s) 99, 409
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 5 cut(s) 99, 114, 115, 177, 409
BmiI GGNNCC 5 cut(s) 100, 101, 115, 116, 265
BmrFI CCNGG 4 cut(s) 36, 201, 482, 517
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 3 cut(s) 196, 556, 658
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 2 cut(s) 294, 506
Bpu10I CCTNAGC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 497
BpuMI CCSGG 2 cut(s) 201, 482
BsaHI GRCGYC 2 cut(s) 264, 606
BsaJI CCNNGG 4 cut(s) 199, 342, 481, 510
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 110, 111, 174, 516
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 2 cut(s) 36, 517
BseDI CCNNGG 4 cut(s) 199, 342, 481, 510
BseGI GGATG 2 cut(s) 213, 279
BseLI CCNNNNNNNGG 5 cut(s) 95, 110, 111, 174, 516
BseMII CTCAG 3 cut(s) 160, 314, 472
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 489
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 5 cut(s) 116, 179, 347, 456, 515
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 639
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 4 cut(s) 201, 481, 635, 656
BslFI GGGAC 2 cut(s) 61, 112
BslI CCNNNNNNNGG 5 cut(s) 95, 110, 111, 174, 516
BsmAI GTCTC 2 cut(s) 280, 303
BsmFI GGGAC 2 cut(s) 61, 112
BsnI GGCC 5 cut(s) 116, 179, 347, 456, 515
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 497
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 23, 118
Bsp143I GATC 4 cut(s) 40, 132, 142, 393
BspACI CCGC 4 cut(s) 53, 80, 196, 229
BspANI GGCC 5 cut(s) 116, 179, 347, 456, 515
BspCNI CTCAG 3 cut(s) 159, 313, 471
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 5 cut(s) 100, 101, 115, 116, 265
BspPI GGATC 2 cut(s) 140, 388
BspQI GCTCTTC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 199, 342, 481, 510
BssMI GATC 4 cut(s) 40, 132, 142, 393
BssNI GRCGYC 2 cut(s) 264, 606
BssT1I CCWWGG 2 cut(s) 342, 510
Bst2UI CCWGG 2 cut(s) 36, 517
Bst4CI ACNGT 3 cut(s) 72, 337, 542
Bst6I CTCTTC 2 cut(s) 366, 645
BstACI GRCGYC 2 cut(s) 264, 606
BstBI TTCGAA 1 cut(s) 497
BstDEI CTNAG 4 cut(s) 146, 300, 378, 458
BstF5I GGATG 2 cut(s) 213, 279
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 6 cut(s) 124, 162, 255, 267, 465, 495
BstHHI GCGC 6 cut(s) 123, 161, 254, 266, 464, 494
BstKTI GATC 4 cut(s) 43, 135, 145, 396
BstMAI GTCTC 2 cut(s) 280, 303
BstMBI GATC 4 cut(s) 40, 132, 142, 393
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 3 cut(s) 156, 237, 483
BstNI CCWGG 2 cut(s) 36, 517
BstSCI CCNGG 4 cut(s) 34, 199, 480, 515
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 489
BstV2I GAAGAC 2 cut(s) 294, 506
BstX2I RGATCY 1 cut(s) 393
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 393
BsuRI GGCC 5 cut(s) 116, 179, 347, 456, 515
BtgZI GCGATG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 213, 279
BtsI GCAGTG 2 cut(s) 532, 550
BtsIMutI CAGTG 3 cut(s) 532, 538, 550
CfoI GCGC 6 cut(s) 123, 161, 254, 266, 464, 494
Cfr13I GGNCC 5 cut(s) 99, 114, 115, 177, 409
CseI GACGC 2 cut(s) 229, 544
Csp6I GTAC 1 cut(s) 388
CviAII CATG 2 cut(s) 418, 665
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 4 cut(s) 146, 300, 378, 458
DinI GGCGCC 1 cut(s) 265
DpnI GATC 4 cut(s) 42, 134, 144, 395
DpnII GATC 4 cut(s) 40, 132, 142, 393
DraIII CACNNNGTG 1 cut(s) 403
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 366, 645
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 2 cut(s) 366, 645
EciI GGCGGA 2 cut(s) 185, 218
Eco130I CCWWGG 2 cut(s) 342, 510
Eco24I GRGCYC 2 cut(s) 23, 118
Eco47I GGWCC 2 cut(s) 99, 409
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 311
EcoO109I RGGNCCY 2 cut(s) 99, 114
EcoRII CCWGG 2 cut(s) 34, 515
EcoT14I CCWWGG 2 cut(s) 342, 510
EcoT38I GRGCYC 2 cut(s) 23, 118
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 342, 510
FaeI CATG 2 cut(s) 421, 668
FaiI YATR 4 cut(s) 401, 419, 473, 666
FaqI GGGAC 2 cut(s) 61, 112
FatI CATG 2 cut(s) 417, 664
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 54, 478
FokI GGATG 2 cut(s) 200, 266
FriOI GRGCYC 2 cut(s) 23, 118
Fsp4HI GCNGC 2 cut(s) 54, 478
GlaI GCGC 6 cut(s) 122, 160, 253, 265, 463, 493
GluI GCNGC 2 cut(s) 54, 478
GsaI CCCAGC 1 cut(s) 121
HaeII RGCGCY 6 cut(s) 124, 162, 255, 267, 465, 495
HaeIII GGCC 5 cut(s) 116, 179, 347, 456, 515
HapII CCGG 4 cut(s) 201, 481, 635, 656
HgaI GACGC 2 cut(s) 229, 544
HhaI GCGC 6 cut(s) 123, 161, 254, 266, 464, 494
Hin1I GRCGYC 2 cut(s) 264, 606
Hin1II CATG 2 cut(s) 421, 668
Hin6I GCGC 6 cut(s) 121, 159, 252, 264, 462, 492
HinP1I GCGC 6 cut(s) 121, 159, 252, 264, 462, 492
HinfI GANTC 4 cut(s) 126, 296, 382, 683
HpaII CCGG 4 cut(s) 201, 481, 635, 656
HphI GGTGA 2 cut(s) 325, 331
Hpy188I TCNGA 4 cut(s) 12, 93, 586, 688
Hpy188III TCNNGA 4 cut(s) 130, 184, 368, 445
Hpy99I CGWCG 7 cut(s) 76, 143, 155, 470, 575, 608, 611
HpyAV CCTTC 3 cut(s) 172, 400, 415
HpyCH4III ACNGT 3 cut(s) 72, 337, 542
HpyCH4IV ACGT 3 cut(s) 225, 606, 697
HpyCH4V TGCA 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 237, 483
HpyF3I CTNAG 4 cut(s) 146, 300, 378, 458
HpySE526I ACGT 3 cut(s) 225, 606, 697
Hsp92I GRCGYC 2 cut(s) 264, 606
Hsp92II CATG 2 cut(s) 421, 668
HspAI GCGC 6 cut(s) 121, 159, 252, 264, 462, 492
KasI GGCGCC 1 cut(s) 263
KflI GGGWCCC 1 cut(s) 99
Kzo9I GATC 4 cut(s) 40, 132, 142, 393
LguI GCTCTTC 1 cut(s) 645
Lsp1109I GCAGC 1 cut(s) 489
LweI GCATC 3 cut(s) 196, 556, 658
MaeII ACGT 3 cut(s) 225, 606, 697
MaeIII GTNAC 3 cut(s) 83, 337, 533
MalI GATC 4 cut(s) 42, 134, 144, 395
MboI GATC 4 cut(s) 40, 132, 142, 393
MboII GAAGA 4 cut(s) 299, 383, 511, 662
MflI RGATCY 1 cut(s) 393
MhlI GDGCHC 2 cut(s) 23, 118
MluCI AATT 3 cut(s) 187, 328, 623
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 2 cut(s) 305, 376
MmeI TCCRAC 1 cut(s) 91
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 4 cut(s) 201, 481, 635, 656
MspR9I CCNGG 4 cut(s) 36, 201, 482, 517
MvaI CCWGG 2 cut(s) 36, 517
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 156, 237, 483
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 2 cut(s) 201, 482
NdeII GATC 4 cut(s) 40, 132, 142, 393
NlaIII CATG 2 cut(s) 421, 668
NlaIV GGNNCC 5 cut(s) 100, 101, 115, 116, 265
NmeAIII GCCGAG 2 cut(s) 432, 501
NmuCI GTSAC 2 cut(s) 337, 533
NspV TTCGAA 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 645
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 147, 603
PfeI GAWTC 2 cut(s) 126, 683
PkrI GCNGC 2 cut(s) 55, 479
PleI GAGTC 2 cut(s) 304, 376
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 2 cut(s) 304, 376
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 34, 515
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 2 cut(s) 34, 515
PspN4I GGNNCC 5 cut(s) 100, 101, 115, 116, 265
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 5 cut(s) 99, 114, 115, 177, 409
PspPPI RGGWCCY 1 cut(s) 99
PspXI VCTCGAGB 1 cut(s) 311
PsuI RGATCY 1 cut(s) 393
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 54, 478
Sau3AI GATC 4 cut(s) 40, 132, 142, 393
Sau96I GGNCC 5 cut(s) 99, 114, 115, 177, 409
SchI GAGTC 2 cut(s) 305, 376
ScrFI CCNGG 4 cut(s) 36, 201, 482, 517
SduI GDGCHC 2 cut(s) 23, 118
SfaNI GCATC 3 cut(s) 196, 556, 658
SfoI GGCGCC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 2 cut(s) 99, 409
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 187, 328, 623
SsiI CCGC 4 cut(s) 53, 80, 196, 229
SspDI GGCGCC 1 cut(s) 263
StyD4I CCNGG 4 cut(s) 34, 199, 480, 515
StyI CCWWGG 2 cut(s) 342, 510
TaaI ACNGT 3 cut(s) 72, 337, 542
TaiI ACGT 3 cut(s) 228, 609, 700
TaqI TCGA 5 cut(s) 141, 312, 324, 444, 497
TasI AATT 3 cut(s) 187, 328, 623
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 126, 683
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 3 cut(s) 532, 538, 557
TseFI GTSAC 2 cut(s) 337, 533
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 2 cut(s) 337, 533
TspDTI ATGAA 2 cut(s) 434, 603
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 3 cut(s) 532, 538, 557
VpaK11BI GGWCC 2 cut(s) 99, 409
XapI RAATTY 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 311
ZraI GACGTC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.