Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001958

Physical Location & Seq

Genomic Coordinates Forward (+)

22192835 .. 22204685

Gene Structure 11851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTGGATAGTATTTGACTCTGTTAATGTGGTCGCGGGCACCGGGATATCGATCCACTACGAGTTCAACAGCCTCAACTCGCCGCTCTACCCGAGGACCCGAGGATTCGATTCCGGCTCCTCCGATTCCAGTTCTGACTCTCTCTCTGTAGGGATTGTCGCTGTTTTTGATGGGCATAATGGCGATGAAGTGGGAGTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

67

Amino Acids

7.02

Weight (kDa)

4.18

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11360 AT1G11360 AT1G11360 AT1G11360
fragaria_vesca	FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_3g03650 FvH4_6g44300 FvH4_6g44300 FvH4_6g44300
malus_domestica	MD05G1329100.v1.1 MD09G1099000.v1.1 MD10G1306000.v1.1 MD17G1087300.v1.1
prunus_persica	Prupe.3G227200_v2.0.a1 Prupe.4G033700_v2.0.a1
pyrus_communis	pycom05g30240 pycom09g02270 pycom10g25830 pycom17g08450
rosa_chinensis	RchiOBHm_Chr2g0161161 RchiOBHm_Chr5g0005691
rosa_laevigata	RLG00000021263 RLG00000031318
rosa_multiflora	Rmu_co8321989.1_g000001 Rmu_sc0000570.1_g000027 Rmu_sc0006420.1_g000039
rosa_roxburghii	Rroxscaffold_1G00070150 Rroxscaffold_2G00089070
rosa_rugosa	Rorug02G0486700 Rorug04G0417300 Rorug04G0417300
rosa_samantha	Rh2AG553400 Rh2BG567100 Rh2CG537200 Rh2DG576400 Rh5AG199300 Rh5BG043600 Rh5CG217700 Rh5DG199600 Rh5DG199700
rosa_wichuraiana	Rw0G008360 Rw2G045770 Rw5G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	35, 83
AclWI	GGATC	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	67
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	2 cut(s)	91, 99
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	91, 99
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	38
BccI	CCATC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	43
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	2 cut(s)	91, 99
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	3 cut(s)	40, 98, 118
BmrFI	CCNGG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	92, 100
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	50
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	92, 100
BseJI	GATNNNNATC	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	50
BsiHKCI	CYCGRG	2 cut(s)	91, 99
BsiSI	CCGG	2 cut(s)	42, 114
BsoBI	CYCGRG	2 cut(s)	91, 99
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	35, 83
BspDI	ATCGAT	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	3 cut(s)	40, 98, 118
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	92, 100
BssMI	GATC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	50
CviJI	RGCY	2 cut(s)	72, 117
CviKI_1	RGCY	2 cut(s)	72, 117
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	91, 99
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	48
FaiI	YATR	1 cut(s)	177
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
HapII	CCGG	2 cut(s)	42, 114
HinfI	GANTC	5 cut(s)	17, 105, 110, 125, 137
HpaII	CCGG	2 cut(s)	42, 114
Hpy188I	TCNGA	2 cut(s)	124, 136
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	3 cut(s)	55, 127, 142
MalI	GATC	1 cut(s)	53
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	11, 131
MnlI	CCTC	4 cut(s)	83, 87, 95, 130
MseI	TTAA	1 cut(s)	24
MspI	CCGG	2 cut(s)	42, 114
MspR9I	CCNGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	35
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	3 cut(s)	40, 98, 118
PfeI	GAWTC	3 cut(s)	105, 110, 125
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	2 cut(s)	11, 131
PpsI	GAGTC	2 cut(s)	11, 131
PpuMI	RGGWCCY	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	40, 98, 118
PspPI	GGNCC	1 cut(s)	96
PspPPI	RGGWCCY	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	2 cut(s)	11, 131
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	96
SsiI	CCGC	2 cut(s)	35, 83
StyD4I	CCNGG	1 cut(s)	41
TaqI	TCGA	2 cut(s)	50, 108
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	105, 110, 125
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.