AT1G16590

HORMA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003409
Physical Location & Seq
Forward (+)
5673707 .. 5675143
1437 bp
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UTR
Exon/CDS
Intron
AT1G16590.1

Sequence Viewer

Length: 648 bp
ATGAGTCGGAAGGATGATAATCAGTCAGGAGAAGTTGGTCGTACTCTGGTGGACTTTATGGAAGTAGCCATCACAATGATTGTATACCTCAAAGGTTTTTACCCATCTGCGGCATTTGAAAGGAGGAGATATATGAATGTGGTGGTGCAAAGAGCAAGGCATCCTGAGCTACGCGACTATATTCACTCTGCTGCTTCTGGACTTCTTCCTTTTATTGAAAAGGGTCTTGTTGAGAGAGTAGCAGTCGTGTTTTTCAGCGAGGATAATGTTCCTGTAGAGAGGTTCATCTTCAAGATCACGATTAAACCGTCTTGCGCTGCTTTAGTAGAAGAGGGTCAACTGGAGTTTGCGCTTAGGTCCTTCTTAATCAAGCTTTCCGTCTCAAAATCCCTAGTCAAACCTCTTCCCCTAAATTGTAGATGGGAGGTAACGGCTTATCTGAGGTCACTTCCTCAAGTGGGTTCAAGCAAAGAAGCAGAGCTGTGGATTCCAACAGACACAAAGCAGTGGCAGAACCCACCAGTTTTAACGCCAGTCAAGTCTTTGAACAGCGAACCACTCTGCTTGCAGCTTTACTTGGAACACCCAAGTTTGTCTGAACCACTCAACCTTGTCAACCCCGAGGATGTCGCACCCCATGACCCATAA

Protein Analysis

215

Amino Acids

24.39

Weight (kDa)

6.12

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HORMA PF02301 18 - 150 1.3e-09 HORMA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 110
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 109, 458
AgsI TTSAA 5 cut(s) 119, 218, 292, 465, 547
AluBI AGCT 4 cut(s) 169, 373, 481, 571
AluI AGCT 4 cut(s) 169, 373, 481, 571
Alw26I GTCTC 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 620
ApeKI GCWGC 3 cut(s) 191, 317, 568
AspLEI GCGC 2 cut(s) 317, 352
AspS9I GGNCC 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 178, 304, 580
BccI CCATC 3 cut(s) 77, 112, 414
BceAI ACGGC 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 4 cut(s) 111, 192, 318, 569
BlsI GCNGC 4 cut(s) 112, 193, 319, 570
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 357
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 2 cut(s) 165, 353
BpuEI CTTGAG 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 458
Bse1I ACTGG 3 cut(s) 345, 521, 533
Bse8I GATNNNNATC 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 3 cut(s) 19, 160, 631
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 109, 458
BseMII CTCAG 2 cut(s) 156, 431
BseNI ACTGG 3 cut(s) 345, 521, 533
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 3 cut(s) 178, 304, 580
Bsh1236I CGCG 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 109, 458
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 620
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 1 cut(s) 110
BspCNI CTCAG 2 cut(s) 157, 432
BspFNI CGCG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 345, 521, 533
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 1 cut(s) 294
BssNAI GTATAC 1 cut(s) 85
Bst1107I GTATAC 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 324, 408
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 3 cut(s) 165, 353, 440
BstF5I GGATG 3 cut(s) 19, 160, 631
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 317, 352
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 178, 304, 580
BstZ17I GTATAC 1 cut(s) 85
BtsCI GGATG 3 cut(s) 19, 160, 631
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 1 cut(s) 512
Cac8I GCNNGC 1 cut(s) 566
CfoI GCGC 2 cut(s) 317, 352
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 42
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviAII CATG 1 cut(s) 638
CviJI RGCY 6 cut(s) 68, 169, 373, 434, 481, 571
CviKI_1 RGCY 6 cut(s) 68, 169, 373, 434, 481, 571
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 3 cut(s) 165, 353, 440
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 324, 408
EarI CTCTTC 2 cut(s) 324, 408
Eco47I GGWCC 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 1 cut(s) 641
FaiI YATR 7 cut(s) 59, 85, 132, 134, 180, 639, 646
FatI CATG 1 cut(s) 637
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 111, 192, 318, 569
FokI GGATG 3 cut(s) 26, 147, 638
Fsp4HI GCNGC 4 cut(s) 111, 192, 318, 569
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 316, 351
GluI GCNGC 4 cut(s) 111, 192, 318, 569
GsuI CTGGAG 1 cut(s) 362
HhaI GCGC 2 cut(s) 317, 352
Hin1II CATG 1 cut(s) 641
Hin6I GCGC 2 cut(s) 315, 350
HinP1I GCGC 2 cut(s) 315, 350
HincII GTYRAC 2 cut(s) 338, 616
HindII GTYRAC 2 cut(s) 338, 616
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 2 cut(s) 4, 487
Hpy166II GTNNAC 4 cut(s) 52, 85, 338, 616
Hpy188I TCNGA 3 cut(s) 9, 441, 598
Hpy188III TCNNGA 5 cut(s) 27, 164, 198, 292, 298
Hpy8I GTNNAC 4 cut(s) 52, 85, 338, 616
HpyAV CCTTC 2 cut(s) 4, 370
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 148, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 3 cut(s) 165, 353, 440
Hsp92II CATG 1 cut(s) 641
HspAI GCGC 2 cut(s) 315, 350
Kzo9I GATC 1 cut(s) 294
LpnPI CCDG 8 cut(s) 12, 32, 177, 183, 285, 326, 534, 546
Lsp1109I GCAGC 3 cut(s) 178, 304, 580
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 2 cut(s) 427, 444
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 4 cut(s) 197, 280, 341, 395
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 515
MseI TTAA 3 cut(s) 303, 365, 527
MslI CAYNNNNRTG 1 cut(s) 74
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 1 cut(s) 294
NlaIII CATG 1 cut(s) 641
NmuCI GTSAC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PfeI GAWTC 1 cut(s) 487
PkrI GCNGC 4 cut(s) 112, 193, 319, 570
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 303, 365, 527
SatI GCNGC 4 cut(s) 111, 192, 318, 569
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 1 cut(s) 412
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 309
TasI AATT 1 cut(s) 412
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 3 cut(s) 303, 365, 527
Tru9I TTAA 3 cut(s) 303, 365, 527
TscAI CASTG 1 cut(s) 512
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 3 cut(s) 191, 317, 568
Tsp45I GTSAC 1 cut(s) 444
TspDTI ATGAA 2 cut(s) 149, 274
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.