Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Forward (+)

7755814 .. 7757573

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G139000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGTATAATTCAAATTGAAAATGGTGCAGGTGAGACAGCTCGGATTCTGGTTGAATTCCTGGAGGTAGCAATCACTTCAATCGTTTTCCTCAAAGGAATTTACCCTCCAGGTGCTTTTGAAAGAAGGAAATATATGAATTTGGTGGTTCATAGCGCTCGTCACCCCGAACTCAGAGATTATATCCATTCTGCTGTCTCGGGACTTCATCCTTTCATCCAAAAGGGTCTGGTGGAGAGAGTAGCAGTTATTTTCTTTAACAGTGATAGCATCCCTGTGGAAAGATTTATGTTTAAGCTCACTGTGAATCAGTCTTATGGCTCAAGGGTGGAAGAAGCTGACCTGGAGTTCTCACTAAGGTCGTTTTTTATCAAGCTTCCTTTCTCAGAATCCCTTACACGGGTTCTTCCCCAGGATTGCAGGTGGGAGATAACCGCGTACTTTCGATCCCTTCCTCAGACAAGCACAAGTAAGGATGCAGAGTTGTGGATTCCAACAGACATACAGCAGTGGCAACAGCCTCCATTAATAACCCCCATTAAATCAATGAGTAGCGAACCTCTATCTGTGCAGTTCTATTTGGAACATCCAGGTTTATCTGAACCAAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

5.97

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	20, 411
Acc36I	ACCTGC	2 cut(s)	20, 411
AccII	CGCG	1 cut(s)	437
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	56, 99, 139
AfaI	GTAC	1 cut(s)	440
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	399, 400
AgsI	TTSAA	5 cut(s)	14, 20, 56, 81, 122
AjnI	CCWGG	5 cut(s)	60, 109, 342, 411, 589
AluBI	AGCT	4 cut(s)	41, 298, 338, 376
AluI	AGCT	4 cut(s)	41, 298, 338, 376
Alw26I	GTCTC	2 cut(s)	29, 202
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	157
ApoI	RAATTY	3 cut(s)	56, 99, 139
AseI	ATTAAT	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	44, 155
AvaI	CYCGRG	1 cut(s)	199
BciT130I	CCWGG	5 cut(s)	62, 111, 344, 413, 591
BcoDI	GTCTC	2 cut(s)	29, 202
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	20, 411
Bme1390I	CCNGG	5 cut(s)	62, 111, 344, 413, 591
BmeT110I	CYCGRG	1 cut(s)	199
BmrFI	CCNGG	5 cut(s)	62, 111, 344, 413, 591
BmsI	GCATC	2 cut(s)	279, 466
BpmI	CTGGAG	3 cut(s)	83, 93, 365
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 400
BseBI	CCWGG	5 cut(s)	62, 111, 344, 413, 591
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	5 cut(s)	208, 216, 270, 481, 586
BseLI	CCNNNNNNNGG	2 cut(s)	399, 400
BseMII	CTCAG	3 cut(s)	187, 399, 470
BsgI	GTGCAG	2 cut(s)	48, 590
Bsh1236I	CGCG	1 cut(s)	437
BsiHKCI	CYCGRG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	399, 400
BsmAI	GTCTC	2 cut(s)	29, 202
BsmFI	GGGAC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	1 cut(s)	435
BspCNI	CTCAG	3 cut(s)	186, 398, 469
BspFNI	CGCG	1 cut(s)	437
BspMI	ACCTGC	2 cut(s)	20, 411
BspPI	GGATC	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	446
Bst2UI	CCWGG	5 cut(s)	62, 111, 344, 413, 591
Bst4CI	ACNGT	2 cut(s)	263, 304
BstDEI	CTNAG	4 cut(s)	173, 356, 385, 456
BstF5I	GGATG	5 cut(s)	208, 216, 270, 481, 586
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	449
BstMAI	GTCTC	2 cut(s)	29, 202
BstMBI	GATC	1 cut(s)	446
BstNI	CCWGG	5 cut(s)	62, 111, 344, 413, 591
BstSCI	CCNGG	5 cut(s)	60, 109, 342, 411, 589
BstUI	CGCG	1 cut(s)	437
BtsCI	GGATG	5 cut(s)	208, 216, 270, 481, 586
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	3 cut(s)	268, 300, 515
BveI	ACCTGC	2 cut(s)	20, 411
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	439
CviJI	RGCY	7 cut(s)	41, 298, 321, 338, 376, 520, 611
CviKI_1	RGCY	7 cut(s)	41, 298, 321, 338, 376, 520, 611
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	4 cut(s)	173, 356, 385, 456
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
Eco47III	AGCGCT	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	5 cut(s)	60, 109, 342, 411, 589
FaiI	YATR	8 cut(s)	8, 135, 137, 153, 183, 290, 318, 503
FaqI	GGGAC	1 cut(s)	216
FokI	GGATG	5 cut(s)	195, 203, 257, 488, 573
GlaI	GCGC	1 cut(s)	157
GsuI	CTGGAG	3 cut(s)	83, 93, 365
HaeII	RGCGCY	1 cut(s)	159
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	46, 307, 389, 490
HphI	GGTGA	2 cut(s)	44, 155
Hpy188I	TCNGA	5 cut(s)	45, 176, 388, 459, 601
Hpy188III	TCNNGA	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	120, 461
HpyCH4III	ACNGT	2 cut(s)	263, 304
HpyCH4V	TGCA	4 cut(s)	29, 420, 479, 571
HpyF3I	CTNAG	4 cut(s)	173, 356, 385, 456
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	446
LweI	GCATC	2 cut(s)	279, 466
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	2 cut(s)	344, 398
MluCI	AATT	5 cut(s)	9, 15, 56, 99, 139
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	58, 101, 117, 465, 531, 570
MseI	TTAA	5 cut(s)	258, 294, 527, 540, 613
MslI	CAYNNNNRTG	1 cut(s)	275
MspR9I	CCNGG	5 cut(s)	62, 111, 344, 413, 591
MvaI	CCWGG	5 cut(s)	62, 111, 344, 413, 591
MvnI	CGCG	1 cut(s)	437
NdeII	GATC	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	161
PaqCI	CACCTGC	2 cut(s)	20, 411
PfeI	GAWTC	4 cut(s)	46, 307, 389, 490
PfoI	TCCNGGA	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	527
Psp6I	CCWGG	5 cut(s)	60, 109, 342, 411, 589
PspGI	CCWGG	5 cut(s)	60, 109, 342, 411, 589
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	258, 294, 527, 540, 613
Sau3AI	GATC	1 cut(s)	446
ScrFI	CCNGG	5 cut(s)	62, 111, 344, 413, 591
SfaNI	GCATC	2 cut(s)	279, 466
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	5 cut(s)	9, 15, 56, 99, 139
SsiI	CCGC	1 cut(s)	435
StyD4I	CCNGG	5 cut(s)	60, 109, 342, 411, 589
TaaI	ACNGT	2 cut(s)	263, 304
TaqI	TCGA	1 cut(s)	445
TasI	AATT	5 cut(s)	9, 15, 56, 99, 139
TfiI	GAWTC	4 cut(s)	46, 307, 389, 490
Tru1I	TTAA	5 cut(s)	258, 294, 527, 540, 613
Tru9I	TTAA	5 cut(s)	258, 294, 527, 540, 613
TscAI	CASTG	3 cut(s)	268, 307, 515
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	140, 152, 197, 205
TspRI	CASTG	3 cut(s)	268, 307, 515
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	3 cut(s)	56, 99, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.