Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

60698565 .. 60700823

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGAGCATGTGTCGAAGCCCCGCAAGCTGTTACCGGAGATGCAGATGAAACCGCTCAGATTCTGGTTGAGTTCTTGGAGGTGGCTATCCAATCAATCATTTTCCTCAAAGGAATTTATCCTGCAGGTTCTGTTGAGAGAAGGAAGAATGTGAATTTGGTTGTTCATATAGCTCGACACCTTGAGCTCAGAGATTATATCCATTCTGCTGTCTCAGGACTTCTTCCTTTTATCAAAAAGGTGAGTACAATCAATGCTCATTGGATTGTGGAATTGTTGCTTATATGTATCTATCTCATATACTCTGTTTTTTATTTTCTTTCAGATGTATTTGATCATTTGGCATCACTACATGATGTTTTTGTGGAAATATCGCAACTTGTCCAAAGTGCACTCGACGGCTACAAGGTGGATCTTTTTTCTGCATTTTATTTTGTGCACATTTTGGCTATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

152

Amino Acids

17.11

Weight (kDa)

5.53

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	2 cut(s)	23, 54
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	114, 154
AfaI	GTAC	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	29, 173, 187
AluI	AGCT	3 cut(s)	29, 173, 187
Alw21I	GWGCWC	3 cut(s)	189, 394, 441
Alw26I	GTCTC	1 cut(s)	217
Alw44I	GTGCAC	2 cut(s)	390, 437
AlwI	GGATC	1 cut(s)	420
AlwNI	CAGNNNCTG	2 cut(s)	64, 131
ApaLI	GTGCAC	2 cut(s)	390, 437
ApoI	RAATTY	2 cut(s)	114, 154
AsuHPI	GGTGA	1 cut(s)	253
BaeGI	GKGCMC	2 cut(s)	394, 441
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	3 cut(s)	189, 394, 441
BceAI	ACGGC	1 cut(s)	415
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	116
BmsI	GCATC	2 cut(s)	31, 353
BpuEI	CTTGAG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	1 cut(s)	27
BseMII	CTCAG	3 cut(s)	71, 202, 228
BseSI	GKGCMC	2 cut(s)	394, 441
BsiHKAI	GWGCWC	3 cut(s)	189, 394, 441
BsiSI	CCGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	189, 394, 441
Bsp143I	GATC	2 cut(s)	334, 412
BspACI	CCGC	2 cut(s)	23, 54
BspCNI	CTCAG	3 cut(s)	70, 201, 227
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	56
BssMI	GATC	2 cut(s)	334, 412
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	57, 188, 214
BstKTI	GATC	2 cut(s)	337, 415
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	2 cut(s)	334, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	2 cut(s)	394, 441
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	2 cut(s)	64, 131
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	2 cut(s)	9, 353
CviJI	RGCY	7 cut(s)	20, 29, 86, 173, 187, 402, 449
CviKI_1	RGCY	7 cut(s)	20, 29, 86, 173, 187, 402, 449
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	3 cut(s)	57, 188, 214
DpnI	GATC	2 cut(s)	336, 414
DpnII	GATC	2 cut(s)	334, 412
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	2 cut(s)	12, 356
FaiI	YATR	9 cut(s)	10, 168, 170, 198, 284, 286, 299, 301, 354
FatI	CATG	2 cut(s)	8, 352
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	189
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	12, 356
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	392, 439
Hpy188I	TCNGA	3 cut(s)	60, 191, 325
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	2 cut(s)	392, 439
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	44, 125, 392, 425, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	57, 188, 214
Hsp92II	CATG	2 cut(s)	12, 356
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	334, 412
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	5 cut(s)	49, 50, 111, 135, 201
LweI	GCATC	2 cut(s)	31, 353
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	336, 414
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	334, 412
MboII	GAAGA	2 cut(s)	157, 215
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	189, 394, 441
MluCI	AATT	3 cut(s)	114, 154, 272
MnlI	CCTC	2 cut(s)	73, 116
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	334, 412
NlaIII	CATG	2 cut(s)	12, 356
NspI	RCATGY	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	2 cut(s)	64, 131
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	334, 412
SbfI	CCTGCAGG	1 cut(s)	127
SdaI	CCTGCAGG	1 cut(s)	127
SduI	GDGCHC	3 cut(s)	189, 394, 441
SetI	ASST	8 cut(s)	31, 84, 130, 175, 183, 189, 243, 411
SfaNI	GCATC	2 cut(s)	31, 353
SfcI	CTRYAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse8387I	CCTGCAGG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	114, 154, 272
SsiI	CCGC	2 cut(s)	23, 54
SstI	GAGCTC	1 cut(s)	189
TaqI	TCGA	4 cut(s)	15, 175, 396, 454
TasI	AATT	3 cut(s)	114, 154, 272
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	63, 155
VneI	GTGCAC	2 cut(s)	390, 437
XapI	RAATTY	2 cut(s)	114, 154
XceI	RCATGY	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.