Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005764.1

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Forward (+)

1424 .. 3909

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005764.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggagcgcaaagacaatcagtctcctcaagatgaaaccgctcggatcctggtcgagttcttggaggtggcaatcacctcaatcgttttcctcaaaggaatttaccccccaggtgcttttgagagaaggaagtacatgaatttggtggttcatagagctcggcaccctgagctcagagattatatccattctgctgtctcaggacttcttccttttatcaaaaagggtctggtggagagagtagcagttattttcttcgacagtgacaacaaccctacggaaagatttatgtttaagctcactgtggatcattcttgtggctcaaacgtcaaagaagctgacctggagttctcacttaggtcattctttatcaagcttcctctcatagaatccgctactaaggttcttcctcagaattgcaggtgggagataacggcatacttccggtcccttcctcaggaaatttcaagcaagaatgaagggttgtggcttccaacagacacaaagcagtggcaacaacctcccctaataactcctattaagtcgatgagtagccaacctctctctgtgcagttgtatctagaacatccaagtaccccaggtaacaattgcaacagccatgctgtcatccattctacattttgcctataccagcgacagaaggttcaagatgtcaatggaagagcttatgttcatttggagaattgggactcttcactagcgatcgcaacttgtggaacgattggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

249

Amino Acids

28.42

Weight (kDa)

7.69

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	39, 393
AclWI	GGATC	3 cut(s)	40, 53, 315
AcsI	RAATTY	3 cut(s)	99, 139, 462
AfaI	GTAC	2 cut(s)	134, 595
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	468, 668
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	4 cut(s)	48, 109, 342, 598
AluBI	AGCT	6 cut(s)	158, 172, 298, 338, 376, 686
AluI	AGCT	6 cut(s)	158, 172, 298, 338, 376, 686
Alw21I	GWGCWC	2 cut(s)	160, 174
Alw26I	GTCTC	2 cut(s)	27, 202
AlwI	GGATC	3 cut(s)	40, 53, 315
ApoI	RAATTY	3 cut(s)	99, 139, 462
AsiSI	GCGATCGC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	447
AxyI	CCTNAGG	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	160, 174
Bbv12I	GWGCWC	2 cut(s)	160, 174
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	4 cut(s)	50, 111, 344, 600
BcoDI	GTCTC	2 cut(s)	27, 202
BfaI	CTAG	2 cut(s)	581, 719
BfuAI	ACCTGC	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	50, 111, 344, 600
Bme18I	GGWCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	3 cut(s)	47, 164, 449
BmrFI	CCNGG	4 cut(s)	50, 111, 344, 600
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	109, 598
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	456
BseBI	CCWGG	4 cut(s)	50, 111, 344, 600
BseDI	CCNNGG	2 cut(s)	109, 598
BseGI	GGATG	2 cut(s)	586, 627
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	5 cut(s)	159, 187, 213, 425, 470
BseRI	GAGGAG	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	590
Bsh1285I	CGRYCG	1 cut(s)	726
BshNI	GGYRCC	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	726
BsiHKAI	GWGCWC	2 cut(s)	160, 174
BsiSI	CCGG	1 cut(s)	445
BslFI	GGGAC	2 cut(s)	433, 722
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	27, 202
BsmFI	GGGAC	2 cut(s)	433, 722
Bsp1286I	GDGCHC	2 cut(s)	160, 174
Bsp143I	GATC	3 cut(s)	45, 307, 723
BspACI	CCGC	2 cut(s)	39, 393
BspCNI	CTCAG	5 cut(s)	160, 186, 212, 424, 469
BspLI	GGNNCC	3 cut(s)	47, 164, 449
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	40, 53, 315
BspQI	GCTCTTC	1 cut(s)	676
BspT107I	GGYRCC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	109, 598
BssMI	GATC	3 cut(s)	45, 307, 723
Bst2UI	CCWGG	4 cut(s)	50, 111, 344, 600
Bst4CI	ACNGT	2 cut(s)	263, 304
Bst6I	CTCTTC	2 cut(s)	676, 718
BstDEI	CTNAG	7 cut(s)	168, 173, 199, 356, 399, 411, 456
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	586, 627
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	48, 310, 726
BstMAI	GTCTC	2 cut(s)	27, 202
BstMBI	GATC	3 cut(s)	45, 307, 723
BstMCI	CGRYCG	1 cut(s)	726
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	4 cut(s)	50, 111, 344, 600
BstSCI	CCNGG	4 cut(s)	48, 109, 342, 598
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	586, 627
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	3 cut(s)	268, 300, 515
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	2 cut(s)	133, 594
CviAII	CATG	2 cut(s)	136, 620
CviQI	GTAC	2 cut(s)	133, 594
DdeI	CTNAG	7 cut(s)	168, 173, 199, 356, 399, 411, 456
DpnI	GATC	3 cut(s)	47, 309, 725
DpnII	GATC	3 cut(s)	45, 307, 723
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	676, 718
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	2 cut(s)	676, 718
Ecl136II	GAGCTC	2 cut(s)	158, 172
Eco24I	GRGCYC	2 cut(s)	160, 174
Eco47I	GGWCC	1 cut(s)	447
Eco53kI	GAGCTC	2 cut(s)	158, 172
Eco81I	CCTNAGG	1 cut(s)	456
EcoICRI	GAGCTC	2 cut(s)	158, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	4 cut(s)	48, 109, 342, 598
EcoT38I	GRGCYC	2 cut(s)	160, 174
FaeI	CATG	2 cut(s)	139, 623
FaiI	YATR	9 cut(s)	137, 153, 183, 290, 386, 439, 621, 649, 690
FaqI	GGGAC	2 cut(s)	433, 722
FatI	CATG	2 cut(s)	135, 619
FokI	GGATG	2 cut(s)	573, 614
FriOI	GRGCYC	2 cut(s)	160, 174
FspBI	CTAG	2 cut(s)	581, 719
GlaI	GCGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	365
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	139, 623
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	389, 710
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	45, 176, 414
Hpy188III	TCNNGA	5 cut(s)	29, 201, 458, 581, 668
HpyAV	CCTTC	4 cut(s)	120, 461, 473, 655
HpyCH4III	ACNGT	2 cut(s)	263, 304
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	420, 571, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	7 cut(s)	168, 173, 199, 356, 399, 411, 456
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	139, 623
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	45, 307, 723
LguI	GCTCTTC	1 cut(s)	676
LmnI	GCTCC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	581, 719
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	263, 602
MalI	GATC	3 cut(s)	47, 309, 725
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	3 cut(s)	45, 307, 723
MboII	GAAGA	5 cut(s)	200, 247, 398, 693, 705
MfeI	CAATTG	1 cut(s)	607
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	160, 174
MluCI	AATT	6 cut(s)	99, 139, 415, 462, 607, 703
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	9 cut(s)	36, 58, 88, 101, 390, 420, 465, 531, 570
MseI	TTAA	2 cut(s)	294, 540
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	4 cut(s)	50, 111, 344, 600
MunI	CAATTG	1 cut(s)	607
MvaI	CCWGG	4 cut(s)	50, 111, 344, 600
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	45, 307, 723
NlaIII	CATG	2 cut(s)	139, 623
NlaIV	GGNNCC	3 cut(s)	47, 164, 449
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	389
Ple19I	CGATCG	1 cut(s)	726
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Psp124BI	GAGCTC	2 cut(s)	160, 174
Psp6I	CCWGG	4 cut(s)	48, 109, 342, 598
PspGI	CCWGG	4 cut(s)	48, 109, 342, 598
PspN4I	GGNNCC	3 cut(s)	47, 164, 449
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	45
PvuI	CGATCG	1 cut(s)	726
RgaI	GCGATCGC	1 cut(s)	726
RsaI	GTAC	2 cut(s)	134, 595
RsaNI	GTAC	2 cut(s)	133, 594
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	2 cut(s)	160, 174
SapI	GCTCTTC	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	294, 540
Sau3AI	GATC	3 cut(s)	45, 307, 723
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	4 cut(s)	50, 111, 344, 600
SduI	GDGCHC	2 cut(s)	160, 174
SfaAI	GCGATCGC	1 cut(s)	726
SgfI	GCGATCGC	1 cut(s)	726
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	6 cut(s)	99, 139, 415, 462, 607, 703
SsiI	CCGC	2 cut(s)	39, 393
SspMI	CTAG	2 cut(s)	581, 719
SstI	GAGCTC	2 cut(s)	160, 174
StyD4I	CCNGG	4 cut(s)	48, 109, 342, 598
TaaI	ACNGT	2 cut(s)	263, 304
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	3 cut(s)	54, 258, 545
TasI	AATT	6 cut(s)	99, 139, 415, 462, 607, 703
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	294, 540
Tru9I	TTAA	2 cut(s)	294, 540
TscAI	CASTG	3 cut(s)	268, 307, 515
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	48, 140, 152, 492, 683
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	268, 307, 515
VpaK11BI	GGWCC	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	3 cut(s)	99, 139, 462
XbaI	TCTAGA	1 cut(s)	580
XspI	CTAG	2 cut(s)	581, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.