Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Forward (+)

20329642 .. 20331927

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGCGCAAAGACAATCAGTCTCCTCAAGATGAAACCGCTCGGATTCTGGTCGAGTTCTTGGAGGTAGCAATCACTTCAATTGTTTTCCTCAAAGGAATTTACGCTCCAGGTGCTTTTGAGAGAAGGAAGTACATGAATTTGGTGGTTCATAGAGCTCGGCACCCTGAGCTCAGAGATTATATCCATTCTGCTGTCTCAGGACTTCTTCCTTTTATCAAAAAGGTGAATTGCAGGTGGGAGATAACGGCATACTTCTGGTCCCTTCCTCAGGAAATTTCAAGCAAGAATGAAGGGTTGTGGCTTCCAACAGACACAAAGCAGTGGCAACAACCTCCCCTAATAAGTCCTATTAAGTCAATGAGTAGCCAACCTCTCTCTGTGCAGTTGTATCTAGAACATCCAAGTGTATATGAACCAAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

142

Amino Acids

16.52

Weight (kDa)

8.69

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	99, 139, 276
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	81, 282
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	158, 172
AluI	AGCT	2 cut(s)	158, 172
Alw21I	GWGCWC	2 cut(s)	160, 174
Alw26I	GTCTC	2 cut(s)	27, 202
ApoI	RAATTY	3 cut(s)	99, 139, 276
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	160, 174
Bbv12I	GWGCWC	2 cut(s)	160, 174
BceAI	ACGGC	2 cut(s)	264, 409
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	27, 202
BfaI	CTAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	261
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	164, 263
BmrFI	CCNGG	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	4 cut(s)	159, 187, 213, 284
BseRI	GAGGAG	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	160, 174
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	27, 202
BsmFI	GGGAC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	160, 174
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	4 cut(s)	160, 186, 212, 283
BspLI	GGNNCC	2 cut(s)	164, 263
BspMI	ACCTGC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	168, 173, 199, 270
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	27, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 169
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
BveI	ACCTGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	5 cut(s)	158, 172, 304, 369, 424
CviKI_1	RGCY	5 cut(s)	158, 172, 304, 369, 424
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	4 cut(s)	168, 173, 199, 270
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	19
Ecl136II	GAGCTC	2 cut(s)	158, 172
Eco24I	GRGCYC	2 cut(s)	160, 174
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	2 cut(s)	158, 172
Eco81I	CCTNAGG	1 cut(s)	270
EcoICRI	GAGCTC	2 cut(s)	158, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	109
EcoT38I	GRGCYC	2 cut(s)	160, 174
FaeI	CATG	1 cut(s)	139
FaiI	YATR	6 cut(s)	137, 153, 183, 253, 412, 414
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	135
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	2 cut(s)	160, 174
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	45, 176
Hpy188III	TCNNGA	4 cut(s)	29, 201, 272, 395
HpyAV	CCTTC	3 cut(s)	120, 275, 287
HpyCH4V	TGCA	2 cut(s)	234, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 169
HpyF3I	CTNAG	4 cut(s)	168, 173, 199, 270
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	4, 112
LpnPI	CCDG	8 cut(s)	35, 96, 123, 180, 186, 220, 244, 257
MaeI	CTAG	1 cut(s)	395
MbiI	CCGCTC	1 cut(s)	41
MboII	GAAGA	1 cut(s)	200
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	160, 174
MluCI	AATT	5 cut(s)	81, 99, 139, 229, 276
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	36, 58, 101, 279, 345, 384
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	113, 169
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	2 cut(s)	164, 263
NmeAIII	GCCGAG	1 cut(s)	139
PaqCI	CACCTGC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	46
Psp124BI	GAGCTC	2 cut(s)	160, 174
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	164, 263
PspPI	GGNCC	1 cut(s)	261
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	2 cut(s)	160, 174
SaqAI	TTAA	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	160, 174
SetI	ASST	8 cut(s)	69, 115, 160, 174, 228, 239, 337, 376
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	5 cut(s)	81, 99, 139, 229, 276
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	2 cut(s)	160, 174
StyD4I	CCNGG	1 cut(s)	109
TaqI	TCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	81, 99, 139, 229, 276
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	329
TspDTI	ATGAA	5 cut(s)	48, 140, 152, 306, 429
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	3 cut(s)	99, 139, 276
XbaI	TCTAGA	1 cut(s)	394
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.