Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

20878207 .. 20879559

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGACGGCGTAGCTGGCCTGGGCTACTTCGATTTGGCCAAGGGGGAGATCGCCAAGGCTATTAGGGCTGAAGAATGGGGCTTAAGATCGACGTCGACAACACAGTTAAGATTAGTTTCTGCACTTCTTGCTCTTACAAATGAAACCGCTCGGATTCTAGTTGAGTTCTTGGAGGTGGCAATCACATCAATCGTTTTCTTCAAAGGAATTTATCCTACAGGACTTGCTGGATATGCGGCCTTAAATGCAGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

85

Amino Acids

9.05

Weight (kDa)

6.17

Isoelectric Point (pI)

18.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	2 cut(s)	147, 236
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	92
AflII	CTTAAG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
AoxI	GGCC	3 cut(s)	16, 36, 237
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	82
BisI	GCNGC	2 cut(s)	237, 249
BlsI	GCNGC	2 cut(s)	238, 250
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	19, 39, 54
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	19, 39, 54
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	18, 38, 239
BsnI	GGCC	3 cut(s)	18, 38, 239
Bsp143I	GATC	2 cut(s)	48, 86
BspACI	CCGC	2 cut(s)	147, 236
BspANI	GGCC	3 cut(s)	18, 38, 239
BspTI	CTTAAG	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	19, 39, 54
BssMI	GATC	2 cut(s)	48, 86
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	39, 54
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	51, 89
BstMBI	GATC	2 cut(s)	48, 86
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 65, 128, 233, 245
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	18, 38, 239
Cac8I	GCNNGC	1 cut(s)	16
CviJI	RGCY	9 cut(s)	14, 18, 24, 38, 59, 68, 81, 239, 251
CviKI_1	RGCY	9 cut(s)	14, 18, 24, 38, 59, 68, 81, 239, 251
DpnI	GATC	2 cut(s)	50, 88
DpnII	GATC	2 cut(s)	48, 86
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	39, 54
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	39, 54
ErhI	CCWWGG	2 cut(s)	39, 54
FaiI	YATR	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	2 cut(s)	237, 249
Fsp4HI	GCNGC	2 cut(s)	237, 249
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	237, 249
HaeIII	GGCC	3 cut(s)	18, 38, 239
Hin1I	GRCGYC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	122, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 65, 128, 233, 245
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	48, 86
LpnPI	CCDG	4 cut(s)	5, 32, 204, 213
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	92
MalI	GATC	2 cut(s)	50, 88
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	48, 86
MboII	GAAGA	2 cut(s)	83, 190
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	1 cut(s)	166
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	3 cut(s)	83, 107, 242
Msp20I	TGGCCA	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	5 cut(s)	15, 65, 128, 233, 245
NdeII	GATC	2 cut(s)	48, 86
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	238, 250
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	83, 107, 242
SatI	GCNGC	2 cut(s)	237, 249
Sau3AI	GATC	2 cut(s)	48, 86
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	3 cut(s)	16, 95, 177
SfcI	CTRYAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	2 cut(s)	147, 236
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	2 cut(s)	39, 54
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	30, 89, 95
TasI	AATT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	83, 107, 242
Tru9I	TTAA	3 cut(s)	83, 107, 242
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.