Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

47157950 .. 47161149

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG336900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGTCGGCAACACAATCAAGAGATGAAACCACTCAGATTTCGGTTGAGTTCTTAGAGGTGGCAATCATATCAATCATTTTCCTCAAAGGAATTTATCCTACAGGTGTTGTTGAGAGAAGGAAGAATATGAATTTGGTTGTTCATATAGCTCGGCACCTTGAGCTCAGAGATTATATCCATTCTGCTCTCTCAGGACTTCTTCCTTTTATCAAAAAGGACCGCCAAGGAGATTTTCTCGGTTGGGTGCACGGTCAATGGCAAGGATCCCAATTTGCAGCAGTAGATTATGGGAACAACCGAAATAGTTCTGCAAATTGCCATTGGTGCAAGGAAATGCCCTTATTCTATTCTAACCTGGTGGATGGTCACTTAACAGTCACACAGAATGACATGTGGATGAATTTAGCTCTCTGTTTTCATGACATGGAGATGAGGTTAAAAAGCACAAGACCAACGACAAGTTCTGGTATAAATTTATACTGTGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

164

Amino Acids

18.64

Weight (kDa)

7.04

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	261, 274
AcsI	RAATTY	4 cut(s)	93, 133, 403, 475
AcyI	GRCGYC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	393
AjnI	CCWGG	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	6 cut(s)	119, 151, 219, 251, 448, 480
AluBI	AGCT	3 cut(s)	152, 166, 410
AluI	AGCT	3 cut(s)	152, 166, 410
Alw21I	GWGCWC	2 cut(s)	168, 252
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	261, 274
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	4 cut(s)	93, 133, 403, 475
Asp700I	GAANNNNTTC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	168, 252
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	158, 268
BmrFI	CCNGG	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	370, 405
BseMII	CTCAG	3 cut(s)	50, 181, 207
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	168, 252
Bsp1286I	GDGCHC	2 cut(s)	168, 252
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	1 cut(s)	223
BspCNI	CTCAG	3 cut(s)	49, 180, 206
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	158, 268
BspPI	GGATC	2 cut(s)	261, 274
BspT107I	GGYRCC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	254, 379, 485
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	4 cut(s)	36, 55, 167, 193
BstF5I	GGATG	2 cut(s)	370, 405
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 327
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	370, 405
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	220
CsiI	ACCWGGT	1 cut(s)	357
CviAII	CATG	4 cut(s)	394, 422, 427, 492
CviJI	RGCY	3 cut(s)	152, 166, 410
CviKI_1	RGCY	3 cut(s)	152, 166, 410
DdeI	CTNAG	4 cut(s)	36, 55, 167, 193
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	4 cut(s)	397, 425, 430, 495
FatI	CATG	4 cut(s)	393, 421, 426, 491
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	2 cut(s)	377, 412
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	397, 425, 430, 495
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	39, 170
Hpy188III	TCNNGA	3 cut(s)	21, 195, 422
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	3 cut(s)	254, 379, 485
HpyCH4V	TGCA	5 cut(s)	250, 278, 314, 330, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 327
HpyF3I	CTNAG	4 cut(s)	36, 55, 167, 193
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	397, 425, 430, 495
Kzo9I	GATC	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	90, 180, 344, 371, 453
Lsp1109I	GCAGC	1 cut(s)	290
MabI	ACCWGGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	368, 379
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	136, 194
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	168, 252
MluCI	AATT	6 cut(s)	93, 133, 272, 316, 403, 475
MnlI	CCTC	3 cut(s)	52, 95, 429
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	2 cut(s)	374, 440
MslI	CAYNNNNRTG	2 cut(s)	398, 431
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	163, 327
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	4 cut(s)	397, 425, 430, 495
NlaIV	GGNNCC	2 cut(s)	158, 268
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	368, 379
NspI	RCATGY	1 cut(s)	397
PagI	TCATGA	1 cut(s)	421
PciI	ACATGT	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	280
PscI	ACATGT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	158, 268
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	398, 431
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	374, 440
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	168, 252
SetI	ASST	8 cut(s)	63, 109, 154, 162, 168, 360, 412, 440
SexAI	ACCWGGT	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	2 cut(s)	398, 431
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	6 cut(s)	93, 133, 272, 316, 403, 475
SsiI	CCGC	1 cut(s)	223
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	254, 379, 485
TasI	AATT	6 cut(s)	93, 133, 272, 316, 403, 475
Tru1I	TTAA	2 cut(s)	374, 440
Tru9I	TTAA	2 cut(s)	374, 440
TseFI	GTSAC	2 cut(s)	368, 379
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	2 cut(s)	368, 379
TspDTI	ATGAA	5 cut(s)	42, 134, 146, 410, 416
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	4 cut(s)	93, 133, 403, 475
XceI	RCATGY	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.