Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

35336079 .. 35336521

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1220700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGTTGTTTGTTACTAACCAACTTGAGGGACCATTGCTCCAATTCGATTAAAGTTGAGAAACCGTTGCTACAATTTTCTCTTTTCTTTAACAGCGACAACATCCCTGCGGAAAGATTTATGTTTAAGCTCAATGTGAATCGATCGTACGGCTCAAGGGTGGAAGAGGCTGACCTGGAGTTCTCACTAAGGTCCTTTTTTGTCAAGCTTCCTGTCGCAGAACCCCTTACCAAGGCTCTTCCCCAGAATTGCAGGTGGGAGATAACTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

91

Amino Acids

10.43

Weight (kDa)

7.72

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	243
AciI	CCGC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	27, 232
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	130, 208
AluI	AGCT	2 cut(s)	130, 208
AspS9I	GGNCC	2 cut(s)	31, 192
AvaII	GGWCC	2 cut(s)	31, 192
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	31, 192
BmgT120I	GGNCC	2 cut(s)	31, 192
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	46, 139
Bsa29I	ATCGAT	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 232
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	27, 232
BseMI	GCAATG	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	146
BsiWI	CGTACG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	27, 232
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	110
BspDI	ATCGAT	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	159, 243
BstDEI	CTNAG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMCI	CGRYCG	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	31, 192
ClaI	ATCGAT	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	5 cut(s)	130, 153, 170, 208, 236
CviKI_1	RGCY	5 cut(s)	130, 153, 170, 208, 236
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	159, 243
EarI	CTCTTC	2 cut(s)	159, 243
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	31, 192
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaiI	YATR	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	44
FokI	GGATG	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	143
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	120, 161, 188, 225, 238, 257
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	176, 230
MluCI	AATT	3 cut(s)	43, 74, 247
MnlI	CCTC	2 cut(s)	21, 160
MseI	TTAA	3 cut(s)	51, 90, 126
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	139
Pfl23II	CGTACG	1 cut(s)	147
Ple19I	CGATCG	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	31, 192
PspPPI	RGGWCCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	51, 90, 126
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	2 cut(s)	31, 192
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	132, 177, 194, 210, 257
SinI	GGWCC	2 cut(s)	31, 192
SmlI	CTYRAG	2 cut(s)	25, 154
SmoI	CTYRAG	2 cut(s)	25, 154
Sse9I	AATT	3 cut(s)	43, 74, 247
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	47, 142
TasI	AATT	3 cut(s)	43, 74, 247
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	51, 90, 126
Tru9I	TTAA	3 cut(s)	51, 90, 126
VpaK11BI	GGWCC	2 cut(s)	31, 192
XagI	CCTNNNNNAGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.