Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Forward (+)

9839942 .. 9843531

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGCGCAAAGACAACCAGTCTCCTCAAGATGAAACCGCTCGGATTCTGGTCGAGTTCTTGGAGGTGGCAATCACTTCAATCGTTTTCCTCAAAGGAATCTACCCTCCAGGTGCTTTTGAGAGAAGGAAGTATATGAATTTGGTGGTTCAAAGAGCTCGGCACCCTGAGCTCAGAGATTATATCCATTCTGCTGTCTTAGGACTACTTCCTTCTATCAAAAAGGGTCTGGTGGAGAGAGTAGCTGTTATATTCTTCGACAGTGACAACAACCCTATGGAAAGGTTTATGTTTAAGCTCACTGTGGATGGGTCTTATGATTCAAACGTCAAAGAAGCTGACCTGGAGTTCTCACTTAGGTCATTCTTTATCAAGCTTCCTGTCATAGAATCTGTTACTAGGGTTCTTCCTCATAATTGCAGGTGGGAGATAACGGCATACTTTCGGTCCCTTCCTCAGGAAAGTTCAAGTAAGAATGAAGAGTTGTGGATTCCAACAGACACAAAGCAGTGGCAACAACCTCCCCTAATAACTCCTATTAAATCAATGAGTAGTCAACCACTCTCTGTGCAGTTGTATCTAGAACATCCAAGTGTATCTGAACCAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

205

Amino Acids

23.61

Weight (kDa)

6.45

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	18 - 109	7.9e-09	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	81, 152, 324, 468
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	109, 342
AluBI	AGCT	6 cut(s)	158, 172, 245, 298, 338, 376
AluI	AGCT	6 cut(s)	158, 172, 245, 298, 338, 376
Alw21I	GWGCWC	2 cut(s)	160, 174
Alw26I	GTCTC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	447
AxyI	CCTNAGG	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	160, 174
Bbv12I	GWGCWC	2 cut(s)	160, 174
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	111, 344
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	399, 581
BfuAI	ACCTGC	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	111, 344
Bme18I	GGWCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	164, 449
BmrFI	CCNGG	2 cut(s)	111, 344
BpmI	CTGGAG	2 cut(s)	93, 365
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	19
Bse21I	CCTNAGG	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	111, 344
BseGI	GGATG	2 cut(s)	313, 586
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	3 cut(s)	159, 187, 470
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	590
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	160, 174
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	160, 174
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	160, 186, 469
BspLI	GGNNCC	2 cut(s)	164, 449
BspMI	ACCTGC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	111, 344
Bst4CI	ACNGT	2 cut(s)	263, 304
Bst6I	CTCTTC	1 cut(s)	474
BstDEI	CTNAG	5 cut(s)	168, 173, 199, 356, 456
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	313, 586
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	111, 344
BstSCI	CCNGG	2 cut(s)	109, 342
Bsu36I	CCTNAGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	313, 586
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	3 cut(s)	268, 300, 515
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	447
CviJI	RGCY	7 cut(s)	158, 172, 245, 298, 338, 376, 610
CviKI_1	RGCY	7 cut(s)	158, 172, 245, 298, 338, 376, 610
DdeI	CTNAG	5 cut(s)	168, 173, 199, 356, 456
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	2 cut(s)	158, 172
Eco24I	GRGCYC	2 cut(s)	160, 174
Eco47I	GGWCC	1 cut(s)	447
Eco53kI	GAGCTC	2 cut(s)	158, 172
Eco81I	CCTNAGG	1 cut(s)	456
EcoICRI	GAGCTC	2 cut(s)	158, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	109, 342
EcoT38I	GRGCYC	2 cut(s)	160, 174
FaqI	GGGAC	1 cut(s)	433
FokI	GGATG	2 cut(s)	320, 573
FriOI	GRGCYC	2 cut(s)	160, 174
FspBI	CTAG	2 cut(s)	399, 581
GlaI	GCGC	1 cut(s)	8
GsuI	CTGGAG	2 cut(s)	93, 365
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	557
HindII	GTYRAC	1 cut(s)	557
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	5 cut(s)	46, 99, 320, 389, 490
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	3 cut(s)	45, 176, 601
Hpy188III	TCNNGA	3 cut(s)	29, 458, 581
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	3 cut(s)	120, 222, 461
HpyCH4III	ACNGT	2 cut(s)	263, 304
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	420, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	5 cut(s)	168, 173, 199, 356, 456
HpySE526I	ACGT	1 cut(s)	327
HspAI	GCGC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	399, 581
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	263, 394
MbiI	CCGCTC	1 cut(s)	41
MboII	GAAGA	3 cut(s)	247, 398, 491
MhlI	GDGCHC	2 cut(s)	160, 174
MluCI	AATT	2 cut(s)	139, 415
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	7 cut(s)	36, 58, 101, 117, 420, 465, 531
MseI	TTAA	2 cut(s)	294, 540
MslI	CAYNNNNRTG	1 cut(s)	591
MspR9I	CCNGG	2 cut(s)	111, 344
MvaI	CCWGG	2 cut(s)	111, 344
MwoI	GCNNNNNNNGC	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	164, 449
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	46, 99, 320, 389, 490
Psp124BI	GAGCTC	2 cut(s)	160, 174
Psp6I	CCWGG	2 cut(s)	109, 342
PspGI	CCWGG	2 cut(s)	109, 342
PspN4I	GGNNCC	2 cut(s)	164, 449
PspPI	GGNCC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	2 cut(s)	160, 174
SaqAI	TTAA	2 cut(s)	294, 540
Sau96I	GGNCC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	111, 344
SduI	GDGCHC	2 cut(s)	160, 174
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	139, 415
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	399, 581
SstI	GAGCTC	2 cut(s)	160, 174
StyD4I	CCNGG	2 cut(s)	109, 342
TaaI	ACNGT	2 cut(s)	263, 304
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	54, 258
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	2 cut(s)	139, 415
TfiI	GAWTC	5 cut(s)	46, 99, 320, 389, 490
Tru1I	TTAA	2 cut(s)	294, 540
Tru9I	TTAA	2 cut(s)	294, 540
TscAI	CASTG	3 cut(s)	268, 307, 515
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	48, 152, 492
TspRI	CASTG	3 cut(s)	268, 307, 515
VpaK11BI	GGWCC	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	580
XspI	CTAG	2 cut(s)	399, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.