Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003053.1

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

319 .. 3001

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003053.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggagcgcaaagacaatcagtctcctcaagatgaaaccgctcggattctggtcgagttcttggaggtggcaatcacttcaatcgttttcctcaaaggaatttaccctccaggtgcttttgagagaaggaagtacatgaatttggtggttcatagagctcggcaccctgagctcagagattatatccattctgctgtctcaggacttcttccttttatcaaaaagggtctggtggagagagtagcagttattttcttcgacagtgacaacaaccctatggaaagatttatgtttaagctcactgtggatcagtcttgtggctccaacgtcaaagaagctgacgtggagttctcacttaggtcattctttatcaagcttcctctcatagaatccgctactaaggttcttcctcagaattgcaggtgggagataacggcatacttccggtcccttcctcaggaaatttcaagcaagaatgaaggattacaaaactgttcaagtgtacgcacatatggctactgtggtaacaattgcaacagccatgctgtcatccattctacatttgcctataccatgcgacagaagggcgaggttccaatggaaacaattgagttcattgaatctaaattggatttgccgaatgacttcaagaagtcactgattcgaaagtaccctgacttttttgcagttaaagatgtgaatggaagagcttatgttcatttggagaattgggactcttcactagcgatcacagcttgtggaacgattggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

257

Amino Acids

29.4

Weight (kDa)

7.62

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	39, 393
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	3 cut(s)	99, 139, 462
AfaI	GTAC	3 cut(s)	134, 504, 671
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	81, 468, 498, 620, 649
AhdI	GACNNNNNGTC	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	7 cut(s)	158, 172, 298, 338, 376, 710, 755
AluI	AGCT	7 cut(s)	158, 172, 298, 338, 376, 710, 755
Alw21I	GWGCWC	2 cut(s)	160, 174
Alw26I	GTCTC	2 cut(s)	27, 202
AlwI	GGATC	1 cut(s)	315
ApoI	RAATTY	3 cut(s)	99, 139, 462
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	447
AsuII	TTCGAA	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	447
AxyI	CCTNAGG	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	160, 174
Bbv12I	GWGCWC	2 cut(s)	160, 174
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	27, 202
BfaI	CTAG	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	4 cut(s)	164, 322, 449, 594
BmrFI	CCNGG	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	5 cut(s)	159, 187, 213, 425, 470
BseRI	GAGGAG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	160, 174
BsiSI	CCGG	1 cut(s)	445
BslFI	GGGAC	2 cut(s)	433, 746
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	27, 202
BsmFI	GGGAC	2 cut(s)	433, 746
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	160, 174
Bsp143I	GATC	2 cut(s)	307, 747
BspACI	CCGC	2 cut(s)	39, 393
BspCNI	CTCAG	5 cut(s)	160, 186, 212, 424, 469
BspLI	GGNNCC	4 cut(s)	164, 322, 449, 594
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	1 cut(s)	315
BspQI	GCTCTTC	1 cut(s)	700
BspT104I	TTCGAA	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	41
BssMI	GATC	2 cut(s)	307, 747
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	4 cut(s)	263, 304, 494, 521
Bst6I	CTCTTC	2 cut(s)	700, 742
BstBI	TTCGAA	1 cut(s)	664
BstDEI	CTNAG	7 cut(s)	168, 173, 199, 356, 399, 411, 456
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	310, 750
BstMAI	GTCTC	2 cut(s)	27, 202
BstMBI	GATC	2 cut(s)	307, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 513, 752
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	268, 300, 656
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	3 cut(s)	133, 503, 670
CviAII	CATG	3 cut(s)	136, 542, 574
CviQI	GTAC	3 cut(s)	133, 503, 670
DdeI	CTNAG	7 cut(s)	168, 173, 199, 356, 399, 411, 456
DpnI	GATC	2 cut(s)	309, 749
DpnII	GATC	2 cut(s)	307, 747
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	700, 742
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	2 cut(s)	700, 742
Ecl136II	GAGCTC	2 cut(s)	158, 172
Eco24I	GRGCYC	2 cut(s)	160, 174
Eco47I	GGWCC	1 cut(s)	447
Eco53kI	GAGCTC	2 cut(s)	158, 172
Eco81I	CCTNAGG	1 cut(s)	456
EcoICRI	GAGCTC	2 cut(s)	158, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	109
EcoT38I	GRGCYC	2 cut(s)	160, 174
FaeI	CATG	3 cut(s)	139, 545, 577
FaqI	GGGAC	2 cut(s)	433, 746
FatI	CATG	3 cut(s)	135, 541, 573
FauNDI	CATATG	1 cut(s)	511
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	2 cut(s)	160, 174
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	93
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	139, 545, 577
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	5 cut(s)	46, 389, 620, 661, 734
HpaII	CCGG	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	45, 176, 414
Hpy188III	TCNNGA	4 cut(s)	29, 201, 458, 649
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	120, 461, 473, 577
HpyCH4III	ACNGT	4 cut(s)	263, 304, 494, 521
HpyCH4IV	ACGT	2 cut(s)	327, 342
HpyCH4V	TGCA	3 cut(s)	420, 534, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 513, 752
HpyF3I	CTNAG	7 cut(s)	168, 173, 199, 356, 399, 411, 456
HpySE526I	ACGT	2 cut(s)	327, 342
Hsp92II	CATG	3 cut(s)	139, 545, 577
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	307, 747
LguI	GCTCTTC	1 cut(s)	700
LmnI	GCTCC	2 cut(s)	4, 326
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	2 cut(s)	327, 342
MaeIII	GTNAC	3 cut(s)	263, 524, 654
MalI	GATC	2 cut(s)	309, 749
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	2 cut(s)	307, 747
MboII	GAAGA	5 cut(s)	200, 247, 398, 717, 729
MfeI	CAATTG	2 cut(s)	529, 606
MhlI	GDGCHC	2 cut(s)	160, 174
MluCI	AATT	8 cut(s)	99, 139, 415, 462, 529, 606, 626, 727
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	36, 58, 101, 117, 390, 420, 465, 583
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	2 cut(s)	294, 690
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	2 cut(s)	529, 606
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	169, 513, 752
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	2 cut(s)	307, 747
NlaIII	CATG	3 cut(s)	139, 545, 577
NlaIV	GGNNCC	4 cut(s)	164, 322, 449, 594
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	263, 654
NspV	TTCGAA	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	4 cut(s)	46, 389, 620, 661
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp124BI	GAGCTC	2 cut(s)	160, 174
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	4 cut(s)	164, 322, 449, 594
PspPI	GGNCC	1 cut(s)	447
RsaI	GTAC	3 cut(s)	134, 504, 671
RsaNI	GTAC	3 cut(s)	133, 503, 670
SacI	GAGCTC	2 cut(s)	160, 174
SapI	GCTCTTC	1 cut(s)	700
SaqAI	TTAA	2 cut(s)	294, 690
Sau3AI	GATC	2 cut(s)	307, 747
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	160, 174
SfuI	TTCGAA	1 cut(s)	664
SinI	GGWCC	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	8 cut(s)	99, 139, 415, 462, 529, 606, 626, 727
SsiI	CCGC	2 cut(s)	39, 393
SspMI	CTAG	1 cut(s)	743
SstI	GAGCTC	2 cut(s)	160, 174
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	4 cut(s)	263, 304, 494, 521
TaiI	ACGT	2 cut(s)	330, 345
TaqI	TCGA	3 cut(s)	54, 258, 664
TasI	AATT	8 cut(s)	99, 139, 415, 462, 529, 606, 626, 727
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	4 cut(s)	46, 389, 620, 661
Tru1I	TTAA	2 cut(s)	294, 690
Tru9I	TTAA	2 cut(s)	294, 690
TscAI	CASTG	3 cut(s)	268, 307, 663
TseFI	GTSAC	2 cut(s)	263, 654
Tsp45I	GTSAC	2 cut(s)	263, 654
TspDTI	ATGAA	6 cut(s)	48, 140, 152, 492, 604, 707
TspRI	CASTG	3 cut(s)	268, 307, 663
VpaK11BI	GGWCC	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	3 cut(s)	99, 139, 462
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.